XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCA
TTTGGCATTTATTGTAATAGAAATGACCATATTGGATTCATTTGGCATTC
ATGTGGACTTCACATGTATTTATGGAGATGTAACTTGGTAATTTAACATT
TATTGTACTAAGCATTATTTAATGGACATTGAAAGACATTGTCGCATGGT
GCTTAATAGAGTCGGTAACTCTGAAGTTAATCTTCTGTCAAAACAAAGGA
ATGAAAAACCACTTTGAGACCCCAAGCCCCCCCAAGCAACTCATCTGCAT
AAGTCAAAATTGTGTATTTACTCTGCCAGATCTTGCTTTCTAAAAATTTT
TAAGCCAGAAGGTTGACTCTAGGACCAAGACAGGGAAGAGCAGATGTTCA
ATTTAGACCTCTTTATATCCTAAAATTGTCTACAAGTACATTAATCTCAG
TCTAAAAATACTAAGGATGATTTTCTTGGCTCATGTACAGTAAATTCAGC
ACAGGGCAGGGGCATGTGTTCTCTGATTTCTTCCTTTCTTCTTCTACTAC
AGCGTTTAGCATGTCCCTGTTAACCTACTCCTCTCAAATAATCCTGTTTT
TTTTTTCCTCCTTGCAGAAGAATTATTTTTAGAACAAAACAAGTCATCAT
TTAGAACAATTGAGAGTCAAGGGAAACTTCCCAGAGAAGTGACAGGAGAG
CTCTTCAGACCCCATGATGGCGACCT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCCCCCCTCTCTCTTGCTCTCTCTCTAT
CTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCTCTCTCACC
CTTTCACTTCTCCTATACCCCTGTGGTGTGTGTGTGTGATGTGTATATGT
GTGTGTATGTTTATGATGTGTGTATGTGTTTGTGTATATGNGTNNTTTAT
GCGTTTTATTTATCTTTCAATCGTTTCTTTGTTTTTCCCTCTCCTCTTCG
CAATTCTTTTATGTTTTTTTTTTCTTCATTTTTCATTCCCCGTTCACGTA
AAAATTTTATTTACCATCTTTTTTGTTTTTCTCCCTTTTTTTTTTTTCTT
TTGCTTTTCTTGCTATTCTATACTATCCCCCCCCCTTCTTGTCTTTTTTT
ACTTATATTGAAGTTATTATGTCCTCGTCTTCCTATTTTCTGTCTCTTCC
ACATTTTTGCATTTCCTTTTTCACTTCCGTCATTTTTTTCCCCGTTTTTC
TTTTTTTTTCCATTTTTGTTCAGCCCTCTCTTTTACATTATTTATAATAT
CTCTCGCTTGCTTATATTCTGTCGTCTTTATACACTATTTTCTGCCGCTC
ACCGTTANGATTTTTTCTTTTATTCACCTTTATTTCGTTCTTTCACTTCT
ACCCTTGCTTCGCTCTTTTTTCTGCCGTTGTGCCACTTTTACCATCCTTT
CTACTCCAGCAATATAGCTTAATTTTTTATCTGTTCTCAACCACCGCCTT
TTTTATCTTTTTTCCTTTACTTTCGCTGCACTACCTCGCTTTTTTATTCT
CTTTTTTCTCCCGTTTCCCTATATTTTATCTCCCTTTTTGTTCATCTATA
TATTATCTTTCCCTCGTTAN

Query= MSMg01no546_d11.b1 MSMg01no546_d11.b1 CHROMAT_FILE:
MSMg01no546_d11.b1 PHD_FILE: MSMg01no546_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
         (692 letters)



>mm_chr8_121110565_121111657
          Length = 1093

 Score = 1299 bits (672), Expect = 0.0
 Identities = 681/684 (99%), Gaps = 1/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattcatttggcatttattgtaatagaaatgaccatattggattcatttggcattcatg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcatttggcatttattgtaatagaaatgaccatattggattcatttggcattcatg 269

                                                                       
Query: 70  tggacttcacatgtatttatggagatgtaacttggtaatttaacatttattgtactaagc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggacttcacatgtatttatggagatgtaacttggtaatttaacatttattgtactaagc 329

                                                                       
Query: 130 attatttaatggacattgaaagacattgtcgcatggtgcttaatagagtcggtaactctg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 attatttaatggacattgaaagacattgtcgcatggtgcttaatagagtcggtaactctg 389

                                                                       
Query: 190 aagttaatcttctgtcaaaacaaaggaatgaaaaaccactttgagaccccaagccccccc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagttaatcttctgtcaaaacaaaggaatgaaaaaccactttgagaccccaagccccccc 449

                                                                       
Query: 250 aagcaactcatctgcataagtcaaaattgtgtatttactctgccagatcttgctttctaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagcaactcatctgcataagtcaaaattgtgtatttactctgccagatcttgctttctaa 509

                                                                       
Query: 310 aaatttttaagccagaaggttgactctaggaccaagacagggaagagcagatgttcaatt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaatttttaagccagaaggttgactctaggaccaagacagggaagagcagatgttcaatt 569

                                                                       
Query: 370 tagacctctttatatcctaaaattgtctacaagtacattaatctcagtctaaaaatacta 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tagacctctttatatcctaaaattgtctacaagtacattaatctcagtctaaaaatacta 629

                                                                       
Query: 430 aggatgattttcttggctcatgtacagtaaattcagcacagggcaggggcatgtgttctc 489
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 630 aggatgattttcttggctcatctacagtaaattcagcacagggcaggggcatgtgctctc 689

                                                                       
Query: 490 tgatttcttcctttcttcttctactacagcgtttagcatgtccctgttaacctactcctc 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgatttcttcctttcttcttctactacagcgtttagcatgtccctgttaacctactcctc 749

                                                                       
Query: 550 tcaaataatcctg-ttttttttttcctccttgcagaagaattatttttagaacaaaacaa 608
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tcaaataatcctggttttttttttcctccttgcagaagaattatttttagaacaaaacaa 809

                                                                       
Query: 609 gtcatcatttagaacaattgagagtcaagggaaacttcccagagaagtgacaggagagct 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gtcatcatttagaacaattgagagtcaagggaaacttcccagagaagtgacaggagagct 869

                                   
Query: 669 cttcagaccccatgatggcgacct 692
           ||||||||||||||||||||||||
Sbjct: 870 cttcagaccccatgatggcgacct 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)