BAC Information

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BAC

Clone NameMSMg01-546L17
Chromosome8 (Build37)
Map Location 33,473,694 - 33,645,405
singlet/doubletdoublet
Overlap geneEG546052
Upstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546L17.T7 (MSMg01no546_l17.b1)MSMg01-546L17.TJ (MSMg01no546_l17.g1)
ACCAG611485AG611486
length750744
length of high quality
(start - end)		712 (34 - 745)664 (68 - 731)
definitionCHROMAT_FILE: MSMg01no546_l17.b1 PHD_FILE: MSMg01no546_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:07 2005CHROMAT_FILE: MSMg01no546_l17.g1 PHD_FILE: MSMg01no546_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,644,698 - 33,645,405)(33,473,694 - 33,474,357)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGAGA
CTTGGTTCAGAGATGAGAACTTGTGTGTGCCTCTGTCTTCTCGGAATAAC
TGAAAAAAAATACTCCCAACTAATTAAGGAAAATGTTTTAATGTCATATT
CCTTTTTATACCACTTGGAGATAGATATCAGAAAGAAAAAATGAATTATA
ATTTTCTAATAACAGGATTTATGGGATTATGAGAGTTCATTATCCTAATT
TTTCAGTCTTAAAAATTATCCCCATTTGATAATAAATAATTAATGACCTA
TATCAAGAAGTATTTCACAATAAACTGAGAAACCACTAGAAGAGATATGG
GTGTGGGGGGGATTGAATTTAAAATAAATGACCTATAAGGGACCTACAAA
TCCAGAGGTTTTGTGTGTGTGTGTGTGTGTTTTCAAGAATTATATTGGCT
GTCATTCCATGTCCAGGTTTAATCTCTTCCTCTGAGAACCAGTTCAGATT
AAAAGAAATTTCAAAAATACCCAAGCAATCAATATCTAATTCATTTACAC
CCTGCTTCTTCCTGGGCCTGCTGGGTATAAGCCTGCAGTCACTGCTGTCT
CTCTTAAATTCAGGCACTTTGGGAAGGGAGCCATCTTTTTAGATCTATTT
TCTCCCTGGAGCTGGGAAGCTGTATCTATATAAAAAGAAGTGACATATTA
GGCTGGGCGTATTAAAACCTTTTCTGAGAAAATCAATATAAGTTTGGGAA


TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCATTTTGGACATTTTTATGACGATGAGGAGA
ACCATGTACTTTGGGAGTTAGGGCTCTGATTAATCTTCACAGCATCAATC
CTGTCAATATCATTTCCCCCTCAGAGAAGAAAGTGGAAGTACAAACATCC
TGTCACCAGGCATTTATGACCAGGTTCCAACTAAGGACACCTAACTGTCA
TTCACCAGGCTTTTTATCATCATTCACAAGATCTGCTGTGAATGTGGAAG
TAGTTCTGGGGAGATGATTTCATGATGAAGAAAAGGCCAAGATAGGTACC
AAGGGGGCACAGACACAAGTGTTGCTGGAGCTCTCTGTCCAGCCAGTGTG
GCTGAATTGGCAAGTTCCAGGTTCTGAGAAGTGCTCTTTGTCAAAAACTG
AGGTAGACAGACATAGAAGAAGATACCTAGTGCTGACCCCTGGTCTCTAG
ATTTACAAGTGTATATGAACACATGTATAGGCATGAATCATACACATGTA
TATAAGGGTACATCATATGCATGTATAAACATTCAAAACATTTATAAAAA
TGACATCAGTGATATTTGCTAAGATAGATGAAGTTCTCTTGTAATTACAC
GGGTTTTATGGCTCACTTCTCTTAGTGAGTAACTTTCTACTTGGTTCTGA
GCAGTGGTTCTCAACCTATGTCTCGTGCCACCTTTAGGAGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_l17.b1 MSMg01no546_l17.b1 CHROMAT_FILE:
MSMg01no546_l17.b1 PHD_FILE: MSMg01no546_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:07 2005
         (712 letters)



>mm_chr8_33644494_33645605
          Length = 1112

 Score = 1369 bits (708), Expect = 0.0
 Identities = 708/708 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagagacttggttcagagatgagaacttgtgtgtgcctctgtcttctcggaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gaattcttagagacttggttcagagatgagaacttgtgtgtgcctctgtcttctcggaat 853

                                                                       
Query: 65  aactgaaaaaaaatactcccaactaattaaggaaaatgttttaatgtcatattccttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 aactgaaaaaaaatactcccaactaattaaggaaaatgttttaatgtcatattccttttt 793

                                                                       
Query: 125 ataccacttggagatagatatcagaaagaaaaaatgaattataattttctaataacagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ataccacttggagatagatatcagaaagaaaaaatgaattataattttctaataacagga 733

                                                                       
Query: 185 tttatgggattatgagagttcattatcctaatttttcagtcttaaaaattatccccattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttatgggattatgagagttcattatcctaatttttcagtcttaaaaattatccccattt 673

                                                                       
Query: 245 gataataaataattaatgacctatatcaagaagtatttcacaataaactgagaaaccact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gataataaataattaatgacctatatcaagaagtatttcacaataaactgagaaaccact 613

                                                                       
Query: 305 agaagagatatgggtgtgggggggattgaatttaaaataaatgacctataagggacctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agaagagatatgggtgtgggggggattgaatttaaaataaatgacctataagggacctac 553

                                                                       
Query: 365 aaatccagaggttttgtgtgtgtgtgtgtgtgttttcaagaattatattggctgtcattc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaatccagaggttttgtgtgtgtgtgtgtgtgttttcaagaattatattggctgtcattc 493

                                                                       
Query: 425 catgtccaggtttaatctcttcctctgagaaccagttcagattaaaagaaatttcaaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catgtccaggtttaatctcttcctctgagaaccagttcagattaaaagaaatttcaaaaa 433

                                                                       
Query: 485 tacccaagcaatcaatatctaattcatttacaccctgcttcttcctgggcctgctgggta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tacccaagcaatcaatatctaattcatttacaccctgcttcttcctgggcctgctgggta 373

                                                                       
Query: 545 taagcctgcagtcactgctgtctctcttaaattcaggcactttgggaagggagccatctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taagcctgcagtcactgctgtctctcttaaattcaggcactttgggaagggagccatctt 313

                                                                       
Query: 605 tttagatctattttctccctggagctgggaagctgtatctatataaaaagaagtgacata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttagatctattttctccctggagctgggaagctgtatctatataaaaagaagtgacata 253

                                                           
Query: 665 ttaggctgggcgtattaaaaccttttctgagaaaatcaatataagttt 712
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttaggctgggcgtattaaaaccttttctgagaaaatcaatataagttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no546_l17.g1 MSMg01no546_l17.g1 CHROMAT_FILE:
MSMg01no546_l17.g1 PHD_FILE: MSMg01no546_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:07 2005
         (664 letters)



>mm_chr8_33473494_33474557
          Length = 1064

 Score = 1284 bits (664), Expect = 0.0
 Identities = 664/664 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccattttggacatttttatgacgatgaggagaaccatgtactttgggagttagggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccattttggacatttttatgacgatgaggagaaccatgtactttgggagttagggctct 260

                                                                       
Query: 61  gattaatcttcacagcatcaatcctgtcaatatcatttccccctcagagaagaaagtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaatcttcacagcatcaatcctgtcaatatcatttccccctcagagaagaaagtgga 320

                                                                       
Query: 121 agtacaaacatcctgtcaccaggcatttatgaccaggttccaactaaggacacctaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtacaaacatcctgtcaccaggcatttatgaccaggttccaactaaggacacctaactg 380

                                                                       
Query: 181 tcattcaccaggctttttatcatcattcacaagatctgctgtgaatgtggaagtagttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattcaccaggctttttatcatcattcacaagatctgctgtgaatgtggaagtagttct 440

                                                                       
Query: 241 ggggagatgatttcatgatgaagaaaaggccaagataggtaccaagggggcacagacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggagatgatttcatgatgaagaaaaggccaagataggtaccaagggggcacagacaca 500

                                                                       
Query: 301 agtgttgctggagctctctgtccagccagtgtggctgaattggcaagttccaggttctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgttgctggagctctctgtccagccagtgtggctgaattggcaagttccaggttctga 560

                                                                       
Query: 361 gaagtgctctttgtcaaaaactgaggtagacagacatagaagaagatacctagtgctgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtgctctttgtcaaaaactgaggtagacagacatagaagaagatacctagtgctgac 620

                                                                       
Query: 421 ccctggtctctagatttacaagtgtatatgaacacatgtataggcatgaatcatacacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctggtctctagatttacaagtgtatatgaacacatgtataggcatgaatcatacacat 680

                                                                       
Query: 481 gtatataagggtacatcatatgcatgtataaacattcaaaacatttataaaaatgacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatataagggtacatcatatgcatgtataaacattcaaaacatttataaaaatgacatc 740

                                                                       
Query: 541 agtgatatttgctaagatagatgaagttctcttgtaattacacgggttttatggctcact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgatatttgctaagatagatgaagttctcttgtaattacacgggttttatggctcact 800

                                                                       
Query: 601 tctcttagtgagtaactttctacttggttctgagcagtggttctcaacctatgtctcgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctcttagtgagtaactttctacttggttctgagcagtggttctcaacctatgtctcgtg 860

               
Query: 661 ccac 664
           ||||
Sbjct: 861 ccac 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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