Query= MSMg01no547_o04.b1 MSMg01no547_o04.b1 CHROMAT_FILE:
MSMg01no547_o04.b1 PHD_FILE: MSMg01no547_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:38 2005
(645 letters)
>mm_chr8_101899251_101900299
Length = 1049
Score = 1187 bits (614), Expect = 0.0
Identities = 635/644 (98%), Gaps = 4/644 (0%)
Strand = Plus / Minus
Query: 6 gaattcatctgcaaggttacattaaatatatattttctttgtctcgaggcaaaggagaca 65
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 781 gaattcatctgcaaggttagattaaatatatattttctttgtctagaggcaaaggagaca 722
Query: 66 catgtcttttaaagttgcctagctggaccatcttttcagtgcgatttaaaaatacaagta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 catgtcttttaaagttgcctagctggaccatcttttcagtgcgatttaaaaatacaagta 662
Query: 126 cccatcatccaggattaggatcaagagcaccaactaaaaattttataaattcaggttgga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cccatcatccaggattaggatcaagagcaccaactaaaaattttataaattcaggttgga 602
Query: 186 aaataagtgggtagatgttgtaaatgtaagaactctggaaggtaggatggaaacttggga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaataagtgggtagatgttgtaaatgtaagaactctggaaggtaggatggaaacttggga 542
Query: 246 ggatgaagtcagtttcccttccattgcataaaaaa----tattaattttgatcataaaat 301
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 541 ggacgaagtcagtttcccttccattgcataaaaaatatttattaattttgatcataaaat 482
Query: 302 aagaacatacattttatataattgtaaacattcaccaaatctaatggaagcagccatgtt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagaacatacattttatataattgtaaacattcaccaaatctaatggaagcagccatgtt 422
Query: 362 ccaattcatttgagaatagactaagacttacaaaaagacataaatcacaccaaaaaaatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaattcatttgagaatagactaagacttacaaaaagacataaatcacaccaaaaaaatg 362
Query: 422 agtgctctctgaacaggtttagcccagcccaagaagtctgagctggctaactttttgtaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtgctctctgaacaggtttagcccagcccaagaagtctgagctggctaactttttgtaa 302
Query: 482 aataataaatgttactttttataacccttaaacaaactgctttgcatttaatattgcttc 541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataataaatgttactttctataacccttaaacaaactgctttgcatttaatattgcttc 242
Query: 542 tgttttcttttctattaagtgcttaaaaagttccatgccaggtagtgatagtgcatgcct 601
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttttcttttctattaagtgctttaaaagttccatgccaggtagtgatagtgcatgcct 182
Query: 602 ttaattccagtacttgggaagaagagtcaggcagatttctgagt 645
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaattccagtacttgggaagaagagtcaggcagatttctgagt 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1049
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1039
Effective search space: 659765
Effective search space used: 659765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_o04.g1 MSMg01no547_o04.g1 CHROMAT_FILE:
MSMg01no547_o04.g1 PHD_FILE: MSMg01no547_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:38 2005
(627 letters)
>mm_chr8_101755091_101756117
Length = 1027
Score = 1197 bits (619), Expect = 0.0
Identities = 625/627 (99%)
Strand = Plus / Plus
Query: 1 acaggtaaagagagaagactgtggaatagctttatgacttctgaaactgggaaaccaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggtaaagagagaagactgtggaatagctttatgacttctgaaactgggaaaccaagg 260
Query: 61 ggactatgatgtcattggaaatacatgtgagggcagacccagtgttattgtcctttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactatgatgtcattggaaatacatgtgagggcagacccagtgttattgtcctttctct 320
Query: 121 gttaaaagccattcacagagtagctatttagcatttttattaattaagtggctaattgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaaagccattcacagagtagctatttagcatttttattaattaagtggctaattgaa 380
Query: 181 tgcatatattggaattgcctggtgatttattgaaaatactaatgtcacagatcatttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatatattggaattgcctggtgatttattgaaaatactaatgtcacagatcatttaca 440
Query: 241 gaaaatatgttaataaaataatacttgcattatttctactgcagggtgttcttcattagc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gaaaatatgttaataaaataatacttgcattatttctactgcagggtgtccttcattagc 500
Query: 301 ctctgaaggtaagtgatagaaacaaaacatagtaggagtatacaagatgttgtgaaacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgaaggtaagtgatagaaacaaaacatagtaggagtatacaagatgttgtgaaacca 560
Query: 361 tgacagtggctgaagtagatcacatgagggtataaagcagggtttgcaagctggagtgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacagtggctgaagtagatcacatgagggtataaagcagggtttgcaagctggagtgat 620
Query: 421 cattgagaaatggggccagacattcactctgcaaggctgaagaagggggagattagatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgagaaatggggccagacattcactctgcaaggctgaagaagggggagattagatgg 680
Query: 481 cctgagagaatgggactttggctttgagtggggatgttgggtttaactaagggcaactac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgagagaatgggactttggctttgagtggggatgttgggtttaactaagggcaactac 740
Query: 541 aaactggtgtcagaggttaccagccttacataatcaattgctaaagcttctagcatatag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaactggtgtcagaggttaccagccttacataatcaattgctaaagcttctagcatatag 800
Query: 601 gagtagagggttttaatcctgaaggag 627
||| |||||||||||||||||||||||
Sbjct: 801 gagaagagggttttaatcctgaaggag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
