BAC Information

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BAC

Clone NameMSMg01-548A07
Chromosome8 (Build37)
Map Location 106,851,473 - 106,851,729
singlet/doubletsinglet
Overlap geneCmtm2b
Upstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a
Downstream geneCmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548A07.T7 (MSMg01no548_a07.b1)MSMg01-548A07.TJ (MSMg01no548_a07.g1)
ACCAG612466AG612467
length783726
length of high quality
(start - end)
260 (48 - 307)538 (79 - 616)
definitionCHROMAT_FILE: MSMg01no548_a07.b1 PHD_FILE: MSMg01no548_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:50 2005CHROMAT_FILE: MSMg01no548_a07.g1 PHD_FILE: MSMg01no548_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAACAGCTGTGCTCCTGTACACATGATCTGGCCCATGAACCCC
CTCCATGGAAGGTTCAGGGGCTCACGTGCTGACCTAAAAGATTTATTGAC
ACAGAAGGACAGACATTTTCCTCGATGTGTAGCCACTGGTAAGATGCCTT
GCTTCTGTATACAAATCCCCACCCGTGCTCCCAAAACAACCACAGTGAAA
CTCACTGAGGCACAGGCGTGCACAAGCACATGAACACACACACACACACA
CACACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCACG
CTCGCACGCTCGCACGCATACTCTCACACACACATTCACTCACCCACTCT
CATCTAATGATGTATTATGTGTCAGACAGTTGGGAAGAGCAGGGTATTCC
AGAGTGCGTATGTATAATAGACAAGGTGACCGAACTTGGATTAATATTCT
GGAACATTGATTTGACCTACATTATGTACATTTATGTGTAATATATGGTG
AAACCTTATGTTTATGGATAACCCATTCTTGTTTTTAATAATAACATTAT
CAAGTACGTCTTCTCTTGGAATAAATTCTTTTACTCCTGTGGGAAAATAT
AAAATTTCGCGAAAAAATGGGATTGTGCTCTTTTTTCCGAAATTCCGATT
TCTTTTCTTAAATTCCCTGGTGTGCTTATACTCTCGAATATAAACTTAAT
GAGCAATTTGTCATATTATTTCCACACGGATTG
NAACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTAGAGAAAGTTCAAATGG
CTGAGAAAACACTTAAAGGGATCTTTAAGATCCCTAGACATCAGGGGAAT
GCAAATCAAAATCACTGACATTTTATCTTACACCGATCAGCATGGCTAAG
ATCAACAAAACTCACAGCCCATGCTGGTGGGGATGTGGAATGAGAGGAAC
ACACATCCATTGCTGGTGGAGTGCACACTTGTCCAGCCATTATGGAAATC
AGTGTAGTGGTTCCTCAGAAAGATGGGAATCAATCTACCTAGAGTTTCAT
CTATCCCACTCTAGGCATATACTCAAAGACACTTCATCCTACCACAAAGC
ACTGGTATAATGTTCATTTCTGTCTATTCATAATAGCCAAGGAAACAACC
TAGGTGTCTCTGGAAGAATGGATAAAGAAAAGAGGGTACATTTGCACAAT
GGAGTGTTATTTAGCTAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGGATAGGTAGATGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATTTATTGATTGTTATATTATNGTGT
TTTATTGTGTGTTTCTGTATTGTTAGTTTATGTGGATTATGATAAGTATT
AAATTTTACCCACCTTATCTGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_a07.b1 MSMg01no548_a07.b1 CHROMAT_FILE:
MSMg01no548_a07.b1 PHD_FILE: MSMg01no548_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:50 2005
         (260 letters)



>mm_chr8_106851293_106851953
          Length = 661

 Score =  458 bits (237), Expect = e-133
 Identities = 252/257 (98%), Gaps = 1/257 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatt-ccaacagctgtgctcctgtacacatgatctggcccatgaaccccctccatggaa 63
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 gaattcccaacagctgtgctcctgtacacacgatctggcccatgaaccccctccatggaa 378

                                                                       
Query: 64  ggttcaggggctcacgtgctgacctaaaagatttattgacacagaaggacagacattttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggttcaggggctcacgtgctgacctaaaagatttattgacacagaaggacagacattttc 318

                                                                       
Query: 124 ctcgatgtgtagccactggtaagatgccttgcttctgtatacaaatccccacccgtgctc 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcggtgtgtagccactggtaagatgccttgcttctgtatacaaatccccacccgtgctc 258

                                                                       
Query: 184 ccaaaacaaccacagtgaaactcactgaggcacaggcgtgcacaagcacatgaacacaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 257 ccaaaacaaccacagtgaaactcactgaggcacaggcgtgcacaagcacatgaacacacg 198

                            
Query: 244 cacacacacacacacac 260
           ||||||| |||||||||
Sbjct: 197 cacacacgcacacacac 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 661
Length adjustment: 9
Effective length of query: 251
Effective length of database: 652
Effective search space:   163652
Effective search space used:   163652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)