BAC Information

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BAC

Clone NameMSMg01-548M06
Chromosome8 (Build37)
Map Location 85,988,834 - 85,989,216
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc
Downstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548M06.T7 (MSMg01no548_m06.b1)MSMg01-548M06.TJ (MSMg01no548_m06.g1)
ACCAG613035AG613036
length748768
length of high quality
(start - end)
446 (44 - 489)383 (74 - 456)
definitionCHROMAT_FILE: MSMg01no548_m06.b1 PHD_FILE: MSMg01no548_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:46 2005CHROMAT_FILE: MSMg01no548_m06.g1 PHD_FILE: MSMg01no548_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACACAGACACCGGCATATTAATTGGTAGGGTTGGTTGTCTAGAGG
GCCCCTAGTTTCCCAGATAGGGCCTGTCCAGCTTTTTCTGGGGGCTAAGG
GGTTGGCATTTTATAGCCATACCTCCCAGCGGACACATGAATTAGGACAT
CAACCCTTGGGTGACCATTCCCTCGAAAGCGGCTCTCGAATCCCTCCCCT
ACAGAACTCTTGCAGCCATTTAAGAAACCCCTGGATCCAGGGTAGAGTCC
TTTCTGCAGTAAGTCTGGGGCTTACTGTGTAGCCTCTAGGGAGCCCTCGT
GATGACTTGGGCCTCTAGCCTGGGTGATTTCTTTTTGGTTGTTGAATTGT
TCTCGGGATGCCAGTACAAACAATCCAATGGGTGCTGCGATGTATTGGAA
TGTACCTCCAGGCATCGCACTTAGGATGTCTCCTGGATAAATCTCTAATC
TTTGCAGCTAACACCTGACTTGAAGGCATCAAAATTAATATATCTCTGCA
ATAAGGTCTGGATTCCAGACCATCTAGATAATAATTCCCTAAAGGTCAGG
TAAAGGTGGCCCTAGATCCAATCATGGTTAAGGGATCTTCATACATACTG
CCCGCTAACTTGGTAAATGGAAAAGAAGGCCCCCTATTGCCAAATGATTC
ATCTTCTCCTGGCTCCCCCCCTCTGGAATGTGGCTTGAACCCCATCCC
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAGTCGTGATTTTGAAGAAAGCATT
TATCAGTCTAGCTATCTCCCCAAGCCTTGCATATTTTAGTGTTTTAGGTG
TGTGTTATTCTGCCCAGTATGTCATCAAGGTTCGTTCATGTTGTTACATT
TTGTAGGACTTGTTTCTTGCCCAGAAGGGTGAGTAATGGCCCCCACTCCT
ATGTGCCAGACACTGCATGGTCCTAACAGAGGGATAGAACACAGGCCCAC
TACTATAGGAGTGCAATGTGCTGGCTGTAGAGGGGTAGAGCAAGTGCAGC
ATGGGGATTTGTGGGTATAGAGCTTCTGTGTTTTCAAGAAGATTAATTCT
TAGATCATGCCCCCAGGAAAGAGGATGCACTGCACAATTATAATGTTGTT
AAAAGGGTAGATATCCTGTTAAGTGCTCACACAAAAACTCTAAATAACAG
GATAAAAGTTAAGCCATCAATGTGTCCTTTGAAAAAATAACTTTGTTAAT
TATACTTTGTTTTAAAGAAATTTTCATTTGGGTTTTCACAAGTTTTTTAA
TCACAAGTCATTTCAAACCTTTGCCCTTCCAGTTTCAACAAATATTCCTT
GGGTCCTGAATAAAAGATTTTTCCTTCCTTGCTGGAAATCTTTTTCATAA
AACTAAATAATCTTTTGGGCAGAAACGGGTTAATAAAAAAAAATTTCCTT
GAATTTTCTCCCACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_m06.g1 MSMg01no548_m06.g1 CHROMAT_FILE:
MSMg01no548_m06.g1 PHD_FILE: MSMg01no548_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:46 2005
         (383 letters)



>mm_chr8_85988634_85989416
          Length = 783

 Score =  741 bits (383), Expect = 0.0
 Identities = 383/383 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagtcgtgattttgaagaaagcatttatcagtctagctatctccccaagccttgcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtcgtgattttgaagaaagcatttatcagtctagctatctccccaagccttgcata 260

                                                                       
Query: 61  ttttagtgttttaggtgtgtgttattctgcccagtatgtcatcaaggttcgttcatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttagtgttttaggtgtgtgttattctgcccagtatgtcatcaaggttcgttcatgttg 320

                                                                       
Query: 121 ttacattttgtaggacttgtttcttgcccagaagggtgagtaatggcccccactcctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacattttgtaggacttgtttcttgcccagaagggtgagtaatggcccccactcctatg 380

                                                                       
Query: 181 tgccagacactgcatggtcctaacagagggatagaacacaggcccactactataggagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagacactgcatggtcctaacagagggatagaacacaggcccactactataggagtg 440

                                                                       
Query: 241 caatgtgctggctgtagaggggtagagcaagtgcagcatggggatttgtgggtatagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgtgctggctgtagaggggtagagcaagtgcagcatggggatttgtgggtatagagc 500

                                                                       
Query: 301 ttctgtgttttcaagaagattaattcttagatcatgcccccaggaaagaggatgcactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgtgttttcaagaagattaattcttagatcatgcccccaggaaagaggatgcactgc 560

                                  
Query: 361 acaattataatgttgttaaaagg 383
           |||||||||||||||||||||||
Sbjct: 561 acaattataatgttgttaaaagg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)