BAC Information

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BAC

Clone NameB6Ng01-001A03
Chromosome9 (Build37)
Map Location 36,636,449 - 36,810,660
singlet/doubletdoublet
Overlap geneLOC627681, Fez1, Pknox2
Upstream gene9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A03.bB6Ng01-001A03.g
ACCDH839450DH839451
length615609
definitionDH839450|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A03, 5' end.DH839451|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,810,047 - 36,810,660)(36,636,449 - 36,637,054)
sequence
gaattcctctgatcaaaatgtgggaaactctatggcctggcagtttcccg
gaaagcatgctgcttctccgaatgctttcacccctctcttgtgccctgtg
ctttgggggctagctgatcaggattcatctgtgacctgtggtcaacagga
ggggacctagatcgtttgtagaaagcctggataacagctgctcaggggtg
gggtaagtgcccacagcagagctctagccctgggggtcctgtgaaggccc
tatcctatcttgcaccaggcaactcacctgagttagaggcagagattgtt
ccattaaggactccattcaagcaccactctactgacagcattagctgggt
attggcttatccttgcagggatttctttgtccttcccctgggaaacacag
aacattcccttgggtttggacatggagtttgagaggcaactacaagttaa
caggaaaaaccaagcaggctggatcttgggagtggggtagggggttgtca
ctgctcccttggagggttctggagaatcgagtctctctggacttccaatt
tgcttggccaggttatctccaagggacttttcctgtttggggttctgggg
tgtgtgtgtatgtgt
gaattcttggtggacctgccttctaacctcttgtgctagggttacaggca
tgtcctcccaccctactgttctacaactcccacagaactgggaattaaac
ccaggactttgcatactgggcagacactctagaactaaaccatatctcta
gctccaaacttgtaatgtgataggtgaagcagcaaactcctaaaattcca
gcacttgggaggctgaggcaagaggatcaatcaatttgagttcaaggtca
gcttgggctacaacatttagttccagccagcctatgctatgtagggaagg
cccatctcaaacaaaacaaacaaaaaacaagcaacaatgaaaacactaaa
agaaaaaaaaactaaagctaaaagaaaaactattgccacatttatattat
gggaattttaattctcttcagggatatcactttggcagctagttttgtgt
atgttctggtggggggtgtttttgctgtttctgtttctgtttctgttgct
gttgctgttgctgctgctgctgctgctggtgctgctggtgtttctttgct
tgttttgtttttttttttttgctctcacagaaccagataggaaaaactgc
tgtgtagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36810047_36810660
seq2: B6Ng01-001A03.b_48_662 (reverse)

seq1  ACACACACACACACACCCCAGAACCCCAAACTGGAAAGGT-CCTTGGAGA  49
      ||||| ||||||||||||||||||||||||| ||||| || |||||||||
seq2  ACACATACACACACACCCCAGAACCCCAAACAGGAAAAGTCCCTTGGAGA  50

seq1  TAACCTGGCCAAGCAAATTGGAAGTCCAGAGAGACTCGATTCTCCAGAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGCCAAGCAAATTGGAAGTCCAGAGAGACTCGATTCTCCAGAAC  100

seq1  CCTCCAAGGGAGCAGTGACAACCCCCTACCCCACTCCCAAGATCCAGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGGGAGCAGTGACAACCCCCTACCCCACTCCCAAGATCCAGCCT  150

seq1  GCTTGGTTTTTCCTGTTAACTTGTAGTTGCCTCTCAAACTCCATGTCCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTTTTCCTGTTAACTTGTAGTTGCCTCTCAAACTCCATGTCCAA  200

seq1  ACCCAAGGGAATGTTCTGTGTTTCCCAGGGGAAGGACAAAGAAATCCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGGAATGTTCTGTGTTTCCCAGGGGAAGGACAAAGAAATCCCTG  250

seq1  CAAGGATAAGCCAATACCCAGCTAATGCTGTCAGTAGAGTGGTGCTTGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATAAGCCAATACCCAGCTAATGCTGTCAGTAGAGTGGTGCTTGAA  300

seq1  TGGAGTCCTTAATGGAACAATCTCTGCCTCTAACTCAGGTGAGTTGCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTTAATGGAACAATCTCTGCCTCTAACTCAGGTGAGTTGCCTG  350

seq1  GTGCAAGATAGGATAGGGCCTTCACAGGACCCCCAGGGCTAGAGCTCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGATAGGATAGGGCCTTCACAGGACCCCCAGGGCTAGAGCTCTGC  400

seq1  TGTGGGCACTTACCCCACCCCTGAGCAGCTGTTATCCAGGCTTTCTACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCACTTACCCCACCCCTGAGCAGCTGTTATCCAGGCTTTCTACAA  450

seq1  ACGATCTAGGTCCCCTCCTGTTGACCACAGGTCACAGATGAATCCTGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCTAGGTCCCCTCCTGTTGACCACAGGTCACAGATGAATCCTGATC  500

seq1  AGCTAGCCCCCAAAGCACAGGGCACAAGAGAGGGGTGAAAGCATTCGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCCCCCAAAGCACAGGGCACAAGAGAGGGGTGAAAGCATTCGGAG  550

seq1  AAGCAGCATGCTTTCCGGGAAACTGCCAGGCCATAGAGTTTCCCACATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATGCTTTCCGGGAAACTGCCAGGCCATAGAGTTTCCCACATTT  600

seq1  TGATCAGAGGAATTC  614
      |||||||||||||||
seq2  TGATCAGAGGAATTC  615

seq1: chr9_36636449_36637054
seq2: B6Ng01-001A03.g_69_677

seq1  GAATTCTTGGTGGACCTGCCTTCTAACCTCTTGTGCTAGGGTTACAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTGGACCTGCCTTCTAACCTCTTGTGCTAGGGTTACAGGCA  50

seq1  TGTCCTCCCACCCTACTGTTCTACAACTCCCACAGAACTGGGAATTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCCACCCTACTGTTCTACAACTCCCACAGAACTGGGAATTAAAC  100

seq1  CCAGGACTTTGCATACTGGGCAGACACTCTAGAACTAAACCATATCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTTTGCATACTGGGCAGACACTCTAGAACTAAACCATATCTCTA  150

seq1  GCTCCAAACTTGTAATGTGATAGGTGAAGCAGCAAACTCCTAAAATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACTTGTAATGTGATAGGTGAAGCAGCAAACTCCTAAAATTCCA  200

seq1  GCACTTGGGAGGCTGAGGCAAGAGGATCAATCAATTTGAGTTCAAGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCTGAGGCAAGAGGATCAATCAATTTGAGTTCAAGGTCA  250

seq1  GCTTGGGCTACAACATTTAGTTCCAGCCAGCCTATGCTATGTAGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTACAACATTTAGTTCCAGCCAGCCTATGCTATGTAGGGAAGG  300

seq1  CCCATCTCAAACAAAACAAACAAAAAACAAGCAACAATGAAAACACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCAAACAAAACAAACAAAAAACAAGCAACAATGAAAACACTAAA  350

seq1  AGAAAAAAAAACTAAAGCTAAAAGAAAAACTATTGCCACATTTATATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAACTAAAGCTAAAAGAAAAACTATTGCCACATTTATATTAT  400

seq1  GGGAATTTTAATTCTCTTCAGGGATATCACTTTGGCAGCTAGTTTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTTAATTCTCTTCAGGGATATCACTTTGGCAGCTAGTTTTGTGT  450

seq1  ATGTTCTGGTGGGGGGTGTTTTTGCTGTTTCTGTTTCTGTTTCTGTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGGTGGGGGGTGTTTTTGCTGTTTCTGTTTCTGTTTCTGTTGCT  500

seq1  GTTGCTGTTGCTGCTGCTGCTGCTGCTGGTGCTGCTGGTGTTTCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTGCTGCTGCTGCTGCTGCTGGTGCTGCTGGTGTTTCTTTGCT  550

seq1  TGTTTTG--TTTTTTGGCATGCTCTCACAGAACCAGATAGG-AAAACTGC  597
      |||||||  ||||||    |||||||||||||||||||||| ||||||||
seq2  TGTTTTGTTTTTTTTTTTTTGCTCTCACAGAACCAGATAGGAAAAACTGC  600

seq1  TGTGTAGCT  606
      |||||||||
seq2  TGTGTAGCT  609