BAC Information

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BAC

Clone NameB6Ng01-001C17
Chromosome9 (Build37)
Map Location 5,113,682 - 5,114,725
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C17.bB6Ng01-001C17.g
ACCDH839566DH839567
length1,2441,031
definitionDH839566|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C17, 5' end.DH839567|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctcctagtattgtttctcaggctagatttatggatagataag
gtttgaatttggttttgtcatctatgtcaattaagagttttattgggtat
agtagtctgggtttgaatctgtgattttgtagaggtttcaagatatttgt
tcaggtttttgtagtttttagagtctctattgaaaagtcacatataattc
tgataggtttgtcattttttccctaccaattaaaaaattgtatttctttc
ttctgtagattttgtgttttgattattatttgtctggagactttttttcc
ctctggtcaagtctattttatattctataagtctatttgatgttctcttt
ctttaggttgggtaaattttcttctatgattttgctgaaagtattttctg
gtgctgagaatctttatgttcttctgttcctattattcttaggttatgcc
ttgtttagtataccatatttcctggaagttttccttcaggaaatttttag
atttaacattttctttgactggtgtatcaatttcatctattgtatcttct
gcactggagattttctctttctttctttctttctttctttcttttttttt
ttttcttttttttttttttttttgtattctgttggtgttgtttgcatctg
ctattcctgctctcttctctaggttttccatctctaggattccctcagtg
tgtgttttctttattgcttctgttttcactttcaggtcttgcacagtttt
attgatatcttaagggttttttcctctttaaaggcctctgtttgattgta
ttttcctgtatttctttaaaggattctttcactttataaaggcctctatc
atctttataagagaggatttaagattactttcttgtgctttgattgtgtt
aggatattcagggcttgttctgtagggtaactgggctctcaagttcttac
tgccacagttttgtgattatgttctttgaggccttagccatctggatgct
ttttgtcctgtagtttccatgtatagcattggaagaagttactgtcatag
tcctgggtggcagtctctgggaatgtctaagctatgtttcatcactaggc
ttattttcgaagtcagttctgtagtttaaatcattgactgatagtgggca
gaactgcatgaaatatggtactggtatcgatgtcaggcactgtcgaacct
ttaaggggagtaattgttgtctaaagtgcatacacatcgtagct
gaattcataatataaacttcaggctaatatctctgataacattaaataca
aaattttcaataaaatattcacaaacctttttacagcaacatataaagaa
gatcatcaaagtagcaaacttgatttttttcccagagatacatgggatgt
ctaacatatataagtcaattaatacaacaaataatacaggtaggattcaa
gaaaaaattcacatgatccatctcaacagacataggaaaagcctttgaaa
aacacaatataactttttgagaatagtcctaaaaagagtagaactggagg
gaacatacattaacacagtaatggttatatatgacaacccaaatcacagg
gaacattctcttaagtgtaggaaaaaaacaagacaacacagttaaaatta
ggggcacatgtgtatgtcattgtatccacaattctgagctgagagatcct
gctactacatagataattcataacaattgtttgttttataagtatttctt
acatttagatattcaattaaaagaaggcatatgtttactttttttcttaa
ttataattccattctggagaaatatcttttaattggggtatattgatttt
tagatatatatgtattagattatattgtattttatatccttggactttct
gcatccattcttaatatcttcagaaatatctgaagtattttaatatctga
acagaaatatctcttctgttaacagacaatataattatgacaaaataagt
cacctttatctgtttataaaatgaaaaagtatatcgtttttctcaaattt
gtaaggacatagtgaagtttagcagaaggaaaaggttcaaataagacctt
tggagaatgaagtaagaaaatttgaacgatgttttataacttgccaaagt
tcagtcagtggcagttttttttcttacctagacaatatagaatacattga
aagtgtaagagaaagtcttcaaataaatcaacagtgctagtgctgccacc
tcagcctttcagtgcctctctcattattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5113682_5114725
seq2: B6Ng01-001C17.g_65_1095 (reverse)

seq1  AAAAATAAATGAGAGAGCAACTGAAAAAGGCTGAGGTGGCAGCACTAAGC  50
      |||||| ||||||||||  ||||  ||||||||||||||||||||| |||
seq2  AAAAAT-AATGAGAGAGGCACTG--AAAGGCTGAGGTGGCAGCACT-AGC  46

seq1  ACTGTTTAATTTATTTTGAAGACTTTCTCTTTACACTTTCAATGTTATTC  100
      |||| || ||||| ||||||||||||||| |||||||||||||| |||||
seq2  ACTG-TTGATTTA-TTTGAAGACTTTCTC-TTACACTTTCAATG-TATTC  92

seq1  TATTATTGTTCTAGGTTAAGAAAAAAAACCTGCCACCTGACTGAACTTTG  150
      || ||||| |||||| |||||||||||| |||||| ||||||||||||||
seq2  TA-TATTG-TCTAGG-TAAGAAAAAAAA-CTGCCA-CTGACTGAACTTTG  137

seq1  GCAAGTTATAAAACATCGTTCAAATTTTCTTACTTCATTCTCCAAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTATAAAACATCGTTCAAATTTTCTTACTTCATTCTCCAAAGGTC  187

seq1  TTATTTGAACCTTTTCCTTCTGCTAAACTTCACTATGTCCTTACAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAACCTTTTCCTTCTGCTAAACTTCACTATGTCCTTACAAATTT  237

seq1  GAGAAAAACGATATACTTTTTCATTTTATAAACAGATAAAGGTGACTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACGATATACTTTTTCATTTTATAAACAGATAAAGGTGACTTAT  287

seq1  TTTGTCATAATTATATTGTCTGTTAACAGAAGAGATATTTCTGTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATAATTATATTGTCTGTTAACAGAAGAGATATTTCTGTTCAGAT  337

seq1  ATTAAAATACTTCAGATATTTCTGAAGATATTAAGAATGGATGCAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATACTTCAGATATTTCTGAAGATATTAAGAATGGATGCAGAAAG  387

seq1  TCCAAGGATATAAAATACAATATAATCTAATACATATATATCTAAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGATATAAAATACAATATAATCTAATACATATATATCTAAAAATC  437

seq1  AATATACCCCAATTAAAAGATATTTCTCCAGAATGGAATTATAATTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCCCAATTAAAAGATATTTCTCCAGAATGGAATTATAATTAAGA  487

seq1  AAAAAAGTAAACATATGCCTTCTTTTAATTGAATATCTAAATGTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAAACATATGCCTTCTTTTAATTGAATATCTAAATGTAAGAAA  537

seq1  TACTTATAAAACAAACAATTGTTATGAATTATCTATGTAGTAGCAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAAAACAAACAATTGTTATGAATTATCTATGTAGTAGCAGGATC  587

seq1  TCTCAGCTCAGAATTGTGGATACAATGACATACACATGTGCCCCTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCAGAATTGTGGATACAATGACATACACATGTGCCCCTAATTT  637

seq1  TAACTGTGTTGTCTTGTTTTTTTCCTACACTTAAGAGAATGTTCCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGTTGTCTTGTTTTTTTCCTACACTTAAGAGAATGTTCCCTGTG  687

seq1  ATTTGGGTTGTCATATATAACCATTACTGTGTTAATGTATGTTCCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTTGTCATATATAACCATTACTGTGTTAATGTATGTTCCCTCCA  737

seq1  GTTCTACTCTTTTTAGGACTATTCTCAAAAAGTTATATTGTGTTTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTCTTTTTAGGACTATTCTCAAAAAGTTATATTGTGTTTTTCAA  787

seq1  AGGCTTTTCCTATGTCTGTTGAGATGGATCATGTGAATTTTTTCTTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCCTATGTCTGTTGAGATGGATCATGTGAATTTTTTCTTGAAT  837

seq1  CCTACCTGTATTATTTGTTGTATTAATTGACTTATATATGTTAGACATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGTATTATTTGTTGTATTAATTGACTTATATATGTTAGACATCC  887

seq1  CATGTATCTCTGGGAAAAAAATCAAGTTTGCTACTTTGATGATCTTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTCTGGGAAAAAAATCAAGTTTGCTACTTTGATGATCTTCTTT  937

seq1  ATATGTTGCTGTAAAAAGGTTTGTGAATATTTTATTGAAAATTTTGTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCTGTAAAAAGGTTTGTGAATATTTTATTGAAAATTTTGTATT  987

seq1  TAATGTTATCAGAGATATTAGCCTGAAGTTTATATTATGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTATCAGAGATATTAGCCTGAAGTTTATATTATGAATTC  1031