BAC Information

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BAC

Clone NameB6Ng01-001G11
Chromosome19 (Build37)9 (Build37)
Map Location 41,129,652 - 41,130,59114,073,678 - 14,074,644
singlet/doubletsingletsinglet
Overlap geneDntt
Upstream geneCyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155
Downstream geneTmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001G11.bB6Ng01-001G11.g
ACCDH839732DH839733
length1,106966
definitionDH839732|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G11, 5' end.DH839733|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,129,652 - 41,130,591)(14,073,678 - 14,074,644)
sequence
gaattctttggttcttggcataaaagtgacacagttaaggtctcacccag
attcaagttgtttcctaaccttctcaaaatgtaaagccatgaaataaagg
tgtttcttgggtcttcccaacctctcacacctaatatttttagagatttg
gtgtgtgtgtgtgtgtgtgtgatttgctccctgaaacctcaggatatact
tttgatcatgacagatgtaattccggggcaggtgactcttcacagaatct
cagtatgagtggacatcaaagaggaaaggaccttaacgttcactccctcc
accttgggacaaagcaaggttcagagaagctacgtagtaaggacacatag
ataggcataatatctgggccaagatctccccactcctcaccctctattat
aataatgatatttgaaacttaaaacgatttaggtcacattttcctctgga
ccaggtattattctagaaacaacgctcctactgtccatttatccactcaa
cagatattcacacatcacctgccgcctgttgggcagtgattgacaagggt
ccaagccaatcagcttcttgttcacattgagtttctgttctagtacaggg
agcccagagctcagccacccgggagctttgccctgaggaagaaagtcacc
ccaaaaatttatgttagagacagcagtttcaaacacccaagggctttgga
tagctctaaacaccgtgtacccgaaataatctggactagacggtaattgt
tttaattctctttgtagcagtttgagagagacttgcggcgctatgccaca
cacgagaggaagatgatgctggacaaccacgccctgtatgacaggactaa
agtagtgttcccttctggggatgggtgactgaccttacctgtaagccctc
cctttgaacagattttctaaacaaaatcattacacttatttatttttttt
acattggggaaatgggtgcatgtagaggtcaggggagtcagttctttctt
ataccatagttctaggaattggaactccgggcctctaggtttggcaacag
gatccttcaccctgcttggtcccacttattcatcctctcccacccaaact
ggattt
gaattcttgtcatttctgccctcttaaccagatggactaagctacttact
cctgctcagtgcctctagcacatggaaagtggaaagggcctaattcgaac
caagaaagaccttagtctctgtcaatagtggataaaatacttacttttca
aatttgattggaatacaactatgtaaatacatggcttaaaagtctggagg
ccatagagagcatagtattggtgataaatcctgaagtctggatttcatta
gcctctcaacatactctgagattgtgttaagtttttgttttgttttggat
cctgaggacatttcctgttatcctgctcatctccctgtcactccaaattc
actgccccgaagacttgtgaggaataaatacaatatacgtgacaaattgc
atccataatgcccatctacaacaaaaaaactctcttatatttttatgtaa
aggtaaccatgaagtgcactggctggctaagtgttagaaaaggaagatgt
gtgggtaactgggataaaactggcagtttataagtagggcttgttaatag
aaaaacaaatcagctatcatcgaagacttagagagcttagagtagtgttg
tatgtttaaggatttttcaggaattggcacatccgagaaaaaaccaaaag
gaccccagaagggcatgatggtctacacttgagttgaagttgtagcttca
acacacctagactagacatccatcttcccaggaattgtcttacacagctg
catatttatagccacttaaaaaattaaaagaactattcaaaagctccttc
aaatagaaaacaaaggaaacaccaccagaagtttgctaactggaaattta
ggggacatttattttactaataaaagttccccgagaccttaaattgtaat
atctttcctgcaagcataaggttaaccattggcctgttaaaaagagatct
cccatttataaaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41129652_41130591
seq2: B6Ng01-001G11.b_211_1146

seq1  GATTTGCTCCCTGAAACCTCAGGATATACTTTTGATCATGACAGATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTCCCTGAAACCTCAGGATATACTTTTGATCATGACAGATGTAA  50

seq1  TTCCGGGGCAGGTGACTCTTCACAGAATCTCAGTATGAGTGGACATCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGGCAGGTGACTCTTCACAGAATCTCAGTATGAGTGGACATCAAA  100

seq1  GAGGAAAGGACCTTAACGTTCACTCCCTCCACCTTGGGACAAAGCAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGACCTTAACGTTCACTCCCTCCACCTTGGGACAAAGCAAGGT  150

seq1  TCAGAGAAGCTACGTAGTAAGGACACATAGATAGGCATAATATCTGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGCTACGTAGTAAGGACACATAGATAGGCATAATATCTGGGCC  200

seq1  AAGATCTCCCCACTCCTCACCCTCTATTATAATAATGATATTTGAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCCCACTCCTCACCCTCTATTATAATAATGATATTTGAAACTT  250

seq1  AAAACGATTTAGGTCACATTTTCCTCTGGACCAGGTATTATTCTAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGATTTAGGTCACATTTTCCTCTGGACCAGGTATTATTCTAGAAAC  300

seq1  AACGCTCCTACTGTCCATTTATCCACTCAACAGATATTCACACATCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCCTACTGTCCATTTATCCACTCAACAGATATTCACACATCACCT  350

seq1  GCCGCCTGTTGGGCAGTGATTGACAAGGGTCCAAGCCAATCAGCTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTGTTGGGCAGTGATTGACAAGGGTCCAAGCCAATCAGCTTCTTG  400

seq1  TTCACATTGAGTTTCTGTTCTAGTACAGGGAGCCCAGAGCTCAGCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTGAGTTTCTGTTCTAGTACAGGGAGCCCAGAGCTCAGCCACCC  450

seq1  GGGAGCTTTGCCCTGAGGAAGAAAGTCACCCCAAAAATTTATGTTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTTGCCCTGAGGAAGAAAGTCACCCCAAAAATTTATGTTAGAGA  500

seq1  CAGCAGTTTCAAACACCCAAGGGCTTTGGATAGCTCTAAACACCGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTCAAACACCCAAGGGCTTTGGATAGCTCTAAACACCGTGTAC  550

seq1  CCGAAATAATCTGGACTAGACGGTAATTTGTTTTAATTCTCTTTGTAGCA  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCGAAATAATCTGGACTAGACGGTAA-TTGTTTTAATTCTCTTTGTAGCA  599

seq1  GTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGC  649

seq1  TGGACAACCACGCCCTGTATGACAGGACTAAGGTAGTGTTCCCTTCTGGG  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGACAACCACGCCCTGTATGACAGGACTAAAGTAGTGTTCCCTTCTGGG  699

seq1  GATGGGTGACTGACCTTACCTGTAAGCCCTCCCTTTGAACAGATTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGGGTGACTGACCTTACCTGTAAGCCCTCCCTTTGAACAGATTTTCT-  748

seq1  AAACAATATTCATTACACTTATTTATTTTTTTTACATTGGGGAAAATGGT  800
      |||||| | ||||||||||||||||||||||||||||||||| |||||| 
seq2  AAACAA-AATCATTACACTTATTTATTTTTTTTACATTGGGG-AAATGGG  796

seq1  TGCATGTAGAGGTCAGGGGAGCCAGTTCTTTCCTATCACATAGGTTCTAG  850
      ||||||||||||||||||||| |||||||||| |||  |||| |||||||
seq2  TGCATGTAGAGGTCAGGGGAGTCAGTTCTTTCTTATACCATA-GTTCTAG  845

seq1  GGA-TGGAACTCCGGGCCTC-AGGTTTGGCAGCAAGTACCTTCA-CCTGC  897
      | | |||||||||||||||| |||||||||| || |  |||||| |||||
seq2  GAATTGGAACTCCGGGCCTCTAGGTTTGGCAACAGGATCCTTCACCCTGC  895

seq1  -TGGTCCCACTTATCCCATCCCTACCCCCAACCCAAACT-GATTT  940
       |||||||||||||  |||||    | || ||||||||| |||||
seq2  TTGGTCCCACTTAT-TCATCC---TCTCCCACCCAAACTGGATTT  936

seq1: chr9_14073678_14074644
seq2: B6Ng01-001G11.g_66_1031 (reverse)

seq1  ATCTTTTATTAAAATGGAGAGTATCTCTTTTTTAACAAGGCCAATTGGTA  50
      |||||||||  |||||| ||| ||||| |||||||| ||||||| |||| 
seq2  ATCTTTTAT--AAATGG-GAG-ATCTC-TTTTTAAC-AGGCCAA-TGGTT  43

seq1  AACTTTATGCTTGCATGAAAAGATATTTACAATTTTAAGGTTTTGGGGGA  100
      ||| ||||||||||| | ||||||| |||||| ||||||| | | |||||
seq2  AACCTTATGCTTGCA-GGAAAGATA-TTACAA-TTTAAGG-TCTCGGGGA  89

seq1  ACTTTTATTAGTAAAATAATATGTCCACTAGATTT-CAGTTAGCAAAC-T  148
      ||||||||||||||||||| |||||| ||| |||| |||||||||||| |
seq2  ACTTTTATTAGTAAAATAA-ATGTCCCCTAAATTTCCAGTTAGCAAACTT  138

seq1  CTGGT-GTGTTTCATT--GTTTCTATTTGAA-GAGCTTTTGAATAGTTCT  194
      ||||| ||||||| ||   |||||||||||| ||||||||||||||||||
seq2  CTGGTGGTGTTTCCTTTGTTTTCTATTTGAAGGAGCTTTTGAATAGTTCT  188

seq1  TATA--TTTTTAAGT-GCTATAAATATGCAGCTGTGTAAGAC-ATTCCTG  240
      | ||  ||||||||| |||||||||||||||||||||||||| |||||||
seq2  TTTAATTTTTTAAGTGGCTATAAATATGCAGCTGTGTAAGACAATTCCTG  238

seq1  GG-AGATGGATGTCTAGTCTAGGTGTGTTGAAGCTACAACTTCAACTCAA  289
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGATGTCTAGTCTAGGTGTGTTGAAGCTACAACTTCAACTCAA  288

seq1  GTGTAGACCATCATGCCCTTCTGGGGTCCTTTTGGTTTTTTCTCGGATGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCATCATGCCCTTCTGGGGTCCTTTTGGTTTTTTCTCGGATGT  338

seq1  GCCAATTCCTGAAAAATCCTTAAACATACAACACTACTCTAAGCTCTCTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCCTGAAAAATCCTTAAACATACAACACTACTCTAAGCTCTCTA  388

seq1  AGTCTTCGATGATAGCTGATTTGTTTTTCTATTAACAAGCCCTACTTATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCGATGATAGCTGATTTGTTTTTCTATTAACAAGCCCTACTTATA  438

seq1  AACTGCCAGTTTTATCCCAGTTACCCACACATCTTCCTTTTCTAACACTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAGTTTTATCCCAGTTACCCACACATCTTCCTTTTCTAACACTT  488

seq1  AGCCAGCCAGTGCACTTCATGGTTACCTTTACATAAAAATATAAGAGAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCAGTGCACTTCATGGTTACCTTTACATAAAAATATAAGAGAGT  538

seq1  TTTTTTGCTGTAGATGGGCATTATGGATGCAATTTGTCACCTATATTGTA  589
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTGTTGTAGATGGGCATTATGGATGCAATTTGTCACGTATATTGTA  588

seq1  TTTATTCCTCAAAAGTCTTTGGGGCAGTGAATTTGGAGTGACAGGGAGAT  639
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TTTATTCCTCACAAGTCTTCGGGGCAGTGAATTTGGAGTGACAGGGAGAT  638

seq1  GAGCAGGATAACAGGAAATGTCCCCAGGATACAAAACAAAACAAAAACCT  689
      ||||||||||||||||||||||| |||||| ||||||||||||||||| |
seq2  GAGCAGGATAACAGGAAATGTCCTCAGGATCCAAAACAAAACAAAAACTT  688

seq1  AACACAATCTCAGAGTATGTTGAGAGGCTAATGAAATCCAGACTTCAGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATCTCAGAGTATGTTGAGAGGCTAATGAAATCCAGACTTCAGGA  738

seq1  TTTATCACCAATACTATGCTCTCTATGGCCTCCAGAATTTTAAGCCATGT  789
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTATCACCAATACTATGCTCTCTATGGCCTCCAGACTTTTAAGCCATGT  788

seq1  ATTAACATAGTTCTATTTTAATTAAATTTGAAAAGTAAGTATTTTATCCA  839
      ||| |||||||| ||||  ||| |||||||||||||||||||||||||||
seq2  ATTTACATAGTTGTATTCCAATCAAATTTGAAAAGTAAGTATTTTATCCA  838

seq1  CTATTGACAGAGACTAAGGTCTTTCTTGGTTCGAATTAGGCCCTTTCCAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACAGAGACTAAGGTCTTTCTTGGTTCGAATTAGGCCCTTTCCAC  888

seq1  TTTCCATGTGCTAGAGGCACTGAGCAGGAGTAAGTAGCTTTGTCCATCTG  939
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCCATGTGCTAGAGGCACTGAGCAGGAGTAAGTAGCTTAGTCCATCTG  938

seq1  GCTAAGAGGGCTGAGATGACAAGAATTC  967
      | ||||||||| || |||||||||||||
seq2  GTTAAGAGGGCAGAAATGACAAGAATTC  966