BAC Information

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BAC

Clone NameB6Ng01-002E07
Chromosome9 (Build37)
Map Location 52,274,716 - 52,387,544
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002E07.bB6Ng01-002E07.g
ACCDH840342DH840343
length1,0291,149
definitionDH840342|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E07, 5' end.DH840343|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,274,716 - 52,275,466)(52,386,399 - 52,387,544)
sequence
gaattctctttctttccctcttgccttttccatttcctgttctccgtcca
ctcttgccctgtctctcctttatttattcttctttctccaatctctcttc
tacccatacctctaccaggagcaagaaagtacctatatctggggagacac
ttatctctaaatcaactgcaacgaataatctcaacacaaacttacaaatt
aaacaggcttgaattcaaatcctgtggctgtctttgcattgacataagca
attgcaggcatcctctccttggctgggttctggcacgcagggcactctgt
ggccataattttgctaaataattaaacttccaacagtatggttcaaatat
cagccatcacatatattaactgtgaataattccataaagtacaactttta
cagccagatctgtagtccacaaatcaacagccaagtaacagatagacatt
atgatcagtgaccaagccaatctatcatgactttcaaagactactgtggt
tggtcatcatatgtgttgctcagttcaggcagagatagtgaagggtaata
ttgtgttgtcttctcatttcctgataataactctgaaagacatcttccaa
actagataattcagagagtgagttaaccatgaaaaaagtgagaccaatag
ggtgaaattctaacagttaataattgaaaattattgacagaagggtcagc
tctggagatgctgatgtttacatcattcaagagcgaatctagatgaactg
gaagacttcacgaaggtgaacttgtggaaaggaaatgaagaaaggggtca
tgatgtaaactatgatgtcccagaaagaacgaggtcatcattaaagggta
tcagagtgacattttgcaacattaaataagtaaaaaagatgagacagtag
aagatcatggaaacacaaatgaagaaagactgttcccacagcacagaact
atgtcataagctatgtgatagaaactatcactgctcaaactactatcata
accctttaaaaggtcatttatttttattt
gaattctcatatttcttatctcatcagctagcaacactgttagataattt
gaaaaggtctgatggctcacaatcaatggatgtgcaatctcaggttcatg
gatgttttataaatagcccaaattcaaacacctaattcctaagtcttgga
agtgtggcttcaaaccatggtccatgacatcaaattcagagtctcttttt
agagtctggggagacttcttcctgtgttaagtgcatgctgggctagcatg
aagacatacatttatatcactggtacccacataaaaagcatgctgtggtg
acatgtgctgtaactgcagcagtggagagttggaggctgagacaaggtga
tcccggagtgtgttggccagtcagtctagccaatccatgagtacctggct
cagtgggagagttcctataacaaaaattagaaggatgctgacttgacctc
tgccctctatgtgtgcacccatgggcacagacacaggttcttatgcctaa
aacatataccacacacatgcacacaaagagaaaattggttattaatgttt
taatgacttcatatgggagttctgtatttatatcattttaacaccatact
tttacctaaattctccatgtctcccccatttttctcaacattatcacttc
ttctttattatacacacacacacacacacacacacacacacacacacaca
cacacgagtccatttagtgtcgttcatctgtatactatgtgcttaaggct
gaccccttgagattagataacctgtgagggttatcctggagaagacagat
tttccttctcttagcagccatttacttgccattaatcttcttctagggat
ggagccttgtgagatgtctccatccacgttggcatgtgatgttgctgttc
agtcacattcagtaaccctcttaagattgcatgggtgcactccttgttgt
atactttgtcattgcagatgtcctggtcttctgtccttacaatctttctg
cccctcatctttgatgttcatgagcctagggtacagcgtttgttctgtag
attgtttcagtgggggttggagtttgtacagttgttcaatgcaatttgac
accctgtggctctacccatgtaagtactctgtgttttgccctcaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52274716_52275466
seq2: B6Ng01-002E07.b_46_796

seq1  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50

seq1  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100

seq1  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150

seq1  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200

seq1  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250

seq1  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300

seq1  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350

seq1  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400

seq1  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450

seq1  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500

seq1  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550

seq1  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600

seq1  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650

seq1  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700

seq1  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750

seq1  G  751
      |
seq2  G  751

seq1: chr9_52386399_52387544
seq2: B6Ng01-002E07.g_67_1215 (reverse)

seq1  CTTTTTGAGG--CAGACACAGATCA---TCATGGGT--AGCCACAAGTGG  43
      ||||||||||   | |||||||  |    |||||||  ||||||| |  |
seq2  CTTTTTGAGGGCAAAACACAGAGTACTTACATGGGTAGAGCCACAGGGTG  50

seq1  TCAAAATGCAATGAACAACTGTACAATACT-CAACCCCCACTGAAAC-AT  91
      ||||| |||| ||||||||||||||| ||| |||||||||||||||| ||
seq2  TCAAATTGCATTGAACAACTGTACAA-ACTCCAACCCCCACTGAAACAAT  99

seq1  CTACAGAACAAACGCTGTACCCTAGGCTCATGGAACATCAAAGATGAGGG  141
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CTACAGAACAAACGCTGTACCCTAGGCTCAT-GAACATCAAAGATGA-GG  147

seq1  GGCAGAAAGATTGTAAGGGACAGAAGACCAGGACATCTGCAATGACAAAG  191
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGATTGTAA-GGACAGAAGACCAGGACATCTGCAATGACAAAG  196

seq1  TATACAACAAGGAGTTGCACCCATGCAATCCTAAGAGGGTTACCTGAATG  241
      |||||||||||||| ||||||||||||||| ||||||||||| |||||||
seq2  TATACAACAAGGAG-TGCACCCATGCAATCTTAAGAGGGTTA-CTGAATG  244

seq1  TGACCTGAACAGCAACATCACATGCCAACGTGGATGGAGACATCTCACAA  291
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-CTGAACAGCAACATCACATGCCAACGTGGATGGAGACATCTCACAA  293

seq1  GGCTCCATCCCTAGAAGAAGATTAATGGCAAGT-AATGGCTGCTAAGAGA  340
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTCCATCCCTAGAAGAAGATTAATGGCAAGTAAATGGCTGCTAAGAGA  343

seq1  AGGAAAATCTGTCTTCTCCAGGATAACCCTCACAGGTTATCTAATCTCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCTGTCTTCTCCAGGATAACCCTCACAGGTTATCTAATCTCAA  393

seq1  GGGGTCAGCCTTAAGCACATAGTATACAGATGAACGACACTAAATGGACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGCCTTAAGCACATAGTATACAGATGAACGACACTAAATGGACT  443

seq1  CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAT  493

seq1  AAAGAAGAAGTGATAATGTTGAGAAAAATGGGGGAGACATGGAGAATTTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGTGATAATGTTGAGAAAAATGGGGGAGACATGGAGAATTTA  543

seq1  GGTAAAAGTATGGTGTTAAAATGATATAAATACAGAACTCCCATATGAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGTATGGTGTTAAAATGATATAAATACAGAACTCCCATATGAAG  593

seq1  TCATTAAAACATTAATAACCAATTTTCTCTTTGTGTGCATGTGTGTGGTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAACATTAATAACCAATTTTCTCTTTGTGTGCATGTGTGTGGTA  643

seq1  TATGTTTTAGGCATAAGAACCTGTGTCTGTGCCCATGGGTGCACACATAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAGGCATAAGAACCTGTGTCTGTGCCCATGGGTGCACACATAG  693

seq1  AGGGCAGAGGTCAAGTCAGCATCCTTCTAATTTTTGTTATAGGAACTCTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGGTCAAGTCAGCATCCTTCTAATTTTTGTTATAGGAACTCTC  743

seq1  CCACTGAGCCAGGTACTCATGGATTGGCTAGACTGACTGGCCAACACACT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCAGGTACTCATGGATTGGCTAGACTGACTGGCCAACACACT  793

seq1  CCGGGATCACCTTGTCTCAGCCTCCAACTCTCCACTGCTGCAGTTACAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGATCACCTTGTCTCAGCCTCCAACTCTCCACTGCTGCAGTTACAGC  843

seq1  ACATGTCACCACAGCATGCTTTTTATGTGGGTACCAGTGATATAAATGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCACCACAGCATGCTTTTTATGTGGGTACCAGTGATATAAATGTA  893

seq1  TGTCTTCATGCTAGCCCAGCATGCACTTAACACAGGAAGAAGTCTCCCCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATGCTAGCCCAGCATGCACTTAACACAGGAAGAAGTCTCCCCA  943

seq1  GACTCTAAAAAGAGACTCTGAATTTGATGTCATGGACCATGGTTTGAAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAAAAAGAGACTCTGAATTTGATGTCATGGACCATGGTTTGAAGC  993

seq1  CACACTTCCAAGACTTAGGAATTAGGTGTTTGAATTTGGGCTATTTATAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCAAGACTTAGGAATTAGGTGTTTGAATTTGGGCTATTTATAA  1043

seq1  AACATCCATGAACCTGAGATTGCACATCCATTGATTGTGAGCCATCAGAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATGAACCTGAGATTGCACATCCATTGATTGTGAGCCATCAGAC  1093

seq1  CTTTTCAAATTATCTAACAGTGTTGCTAGCTGATGAGATAAGAAATATGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATTATCTAACAGTGTTGCTAGCTGATGAGATAAGAAATATGA  1143

seq1  GAATTC  1146
      ||||||
seq2  GAATTC  1149