BAC Information

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BAC

Clone NameB6Ng01-002E14
Chromosome9 (Build37)
Map Location 52,467,013 - 52,624,635
singlet/doubletdoublet
Overlap geneAI593442, Gm1715
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002E14.bB6Ng01-002E14.g
ACCDH840356DH840357
length7371,017
definitionDH840356|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E14, 5' end.DH840357|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,623,901 - 52,624,635)(52,467,013 - 52,468,028)
sequence
gaattcattttcagtttcaaaaccatttttgaataactagacagaattgg
agaggaaaaagtactatcttttgttttcacgtctctgcccttaaacattc
tgttcagaaaacgagagtggttttaggatatttcaaatgtttctcttcag
ttgctgtcattaacagtaaagagtttcggggaaatcacagaagcaggcat
tttcagactgaggcagtctatacctgacaggcttgaactctcccagactg
gcggaccttccaggatgcatatcagtctgccttactctggaatcatttca
taaaggtggaaatcatttcataaaagtttattgttaagctaataaatcca
ttttcagaaaccgcactgggagagcagagttttcataatccctgtagctc
tctttaagtttcctaacagttctgaaacgttccatgatttcctacaatgg
acaatcacgtaaggcagaaaacaaaccccaccaacttttctaaaaactta
cttactgttagcttatgagatggccatgatctacgctgtgggcctgctga
ggaggagggagtaagtgtttctggaacctacacaaaaggttacgcaggga
atgcattagtccacagggaatacatcagtccacagggtacgtgcatttgc
cagtgcgaccaggctcagagaggtaacccagagagctagaacagattggt
cagattagaacccgggcttccggggggggggggggag
gaattctccctaaaggacagttctgattctggacccatggaaggggccta
acatcctgtagatctgacaagcacccaggtgatgtcaaagtggccagtct
gtagtgtattttgagtgacaaggttgtgtgtaacttcagtggtttgcctt
caaacccacagtgtgttatacatgctactaaggcaccaacttaagacaaa
aaaaaaaaatcctgtacgtagcagagctgccccgtagtagcccaggtggc
catggatggctgaatggctgacacacccttaaaacactggttcttccctg
tcgctccttggatccccctcccaaccttgcttcctccactgtctttcttc
caacatgggtgtgttagcacttgacctaatcaagatcttttcttcacaga
ataaattcaatatgtttgagcatacataaatgtaataaattttatatgca
gtattaaaataaaaatatatcgaagagcatcagctatttgtcaaatagct
tcacacaccaggccctgagggaaaaactttatggccaggtttgttctccc
cacattggctactgccaccaagtgttcatagctcctatttgtggatgcaa
agtcccttcaacgaatgagacaggattctagaaaagtctctaagagaagt
taactttgacattaacatcaacagactaaagtggggcccaggaaatatgt
cagcagataaaggcacttgccaccaagcctgagactttagtttccttccc
aggacccacatgatggaaggcaaaaactggctcctacaagccaaccacag
taacaaacttgccatgatgaatgcgcacaagtgtgctcacgcatgtgtgt
acgcacatgtaattaattttaattatccaaacagctattttaactgagtt
tgaagtaattttcactggtcggcagcattacacttacttatcgggagaag
cttgtctggatgttttagaagaaacttttaccagaaaagaattacatgac
ctggacttctaggcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52623901_52624635
seq2: B6Ng01-002E14.b_47_783 (reverse)

seq1  --CTCCCCCCCCCCCCGGAAGCCCGGGTTCTAATCTGACCAATCTGTTCT  48
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCCCCCCCCCGGAAGCCCGGGTTCTAATCTGACCAATCTGTTCT  50

seq1  AGCTCTCTGGGTTACCTCTCTGAGCCTGGTCGCACTGGCAAATGCACGTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGGGTTACCTCTCTGAGCCTGGTCGCACTGGCAAATGCACGTA  100

seq1  CCCTGTGGACTGATGTATTCCCTGTGGACTAATGCATTCCCTGCGTAACC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGACTGATGTATTCCCTGTGGACTAATGCATTCCCTGCGTAACC  150

seq1  TTTTGTGTAGGTTCCAGAAACACTTACTCCCTCCTCCTCAGCAGGCCCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTAGGTTCCAGAAACACTTACTCCCTCCTCCTCAGCAGGCCCAC  200

seq1  AGCGTAGATCATGGCCATCTCATAAGCTAACAGTAAGTAAGTTTTTAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGATCATGGCCATCTCATAAGCTAACAGTAAGTAAGTTTTTAGAA  250

seq1  AAGTTGGTGGGGTTTGTTTTCTGCCTTACGTGATTGTCCATTGTAGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTGGGGTTTGTTTTCTGCCTTACGTGATTGTCCATTGTAGGAAA  300

seq1  TCATGGAACGTTTCAGAACTGTTAGGAAACTTAAAGAGAGCTACAGGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACGTTTCAGAACTGTTAGGAAACTTAAAGAGAGCTACAGGGAT  350

seq1  TATGAAAACTCTGCTCTCCCAGTGCGGTTTCTGAAAATGGATTTATTAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACTCTGCTCTCCCAGTGCGGTTTCTGAAAATGGATTTATTAGC  400

seq1  TTAACAATAAACTTTTATGAAATGATTTCCACCTTTATGAAATGATTCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATAAACTTTTATGAAATGATTTCCACCTTTATGAAATGATTCCA  450

seq1  GAGTAAGGCAGACTGATATGCATCCTGGAAGGTCCGCCAGTCTGGGAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGCAGACTGATATGCATCCTGGAAGGTCCGCCAGTCTGGGAGAG  500

seq1  TTCAAGCCTGTCAGGTATAGACTGCCTCAGTCTGAAAATGCCTGCTTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCTGTCAGGTATAGACTGCCTCAGTCTGAAAATGCCTGCTTCTG  550

seq1  TGATTTCCCCGAAACTCTTTACTGTTAATGACAGCAACTGAAGAGAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCCGAAACTCTTTACTGTTAATGACAGCAACTGAAGAGAAACA  600

seq1  TTTGAAATATCCTAAAACCACTCTCGTTTTCTGAACAGAATGTTTAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATCCTAAAACCACTCTCGTTTTCTGAACAGAATGTTTAAGGG  650

seq1  CAGAGACGTGAAAACAAAAGATAGTACTTTTTCCTCTCCAATTCTGTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGTGAAAACAAAAGATAGTACTTTTTCCTCTCCAATTCTGTCTA  700

seq1  GTTATTCAAAAATGGTTTTGAAACTGAAAATGAATTC  735
      |||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAAAAATGGTTTTGAAACTGAAAATGAATTC  737

seq1: chr9_52467013_52468028
seq2: B6Ng01-002E14.g_68_1084

seq1  GAATTCTCCCTAAAGGACAGTTCTGATTCTGGACCCATGGAAGGGGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTAAAGGACAGTTCTGATTCTGGACCCATGGAAGGGGCCTA  50

seq1  ACATCCTGTAGATCTGACAAGCACCCAGGTGATGTCAAAGTGGCCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTAGATCTGACAAGCACCCAGGTGATGTCAAAGTGGCCAGTCT  100

seq1  GTAGTGTATTTTGAGTGACAAGGTTGTGTGTAACTTCAGTGGTTTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTATTTTGAGTGACAAGGTTGTGTGTAACTTCAGTGGTTTGCCTT  150

seq1  CAAACCCACAGTGTGTTATACATGCTACTAAGGCACCAACTTAAGACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACAGTGTGTTATACATGCTACTAAGGCACCAACTTAAGACAAA  200

seq1  AAAAAAAAATCCTGTACGTAGCAGAGCTGCCCCGTAGTAGCCCAGGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCTGTACGTAGCAGAGCTGCCCCGTAGTAGCCCAGGTGGC  250

seq1  CATGGATGGCTGAATGGCTGACACACCCTTAAAACACTGGTTCTTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGGCTGAATGGCTGACACACCCTTAAAACACTGGTTCTTCCCTG  300

seq1  TCGCTCCTTGGATCCCCCTCCCAACCTTGCTTCCTCCACTGTCTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTTGGATCCCCCTCCCAACCTTGCTTCCTCCACTGTCTTTCTTC  350

seq1  CAACATGGGTGTGTTAGCACTTGACCTAATCAAGATCTTTTCTTCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGGTGTGTTAGCACTTGACCTAATCAAGATCTTTTCTTCACAGA  400

seq1  ATAAATTCAATATGTTTGAGCATACATAAATGTAATAAATTTTATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAATATGTTTGAGCATACATAAATGTAATAAATTTTATATGCA  450

seq1  GTATTAAAATAAAAATATATCGAAGAGCATCAGCTATTTGTCAAATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAATAAAAATATATCGAAGAGCATCAGCTATTTGTCAAATAGCT  500

seq1  TCACACACCAGGCCCTGAGGGAAAAACTTTATGGCCAGGTTTGTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACCAGGCCCTGAGGGAAAAACTTTATGGCCAGGTTTGTTCTCCC  550

seq1  CACATTGGCTACTGCCACCAAGTGTTCATAGCTCCTATTTGTGGATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGCTACTGCCACCAAGTGTTCATAGCTCCTATTTGTGGATGCAA  600

seq1  AGTCCCTTCAACGAATGAGACAGGATTCTAGAAAAGTCTCTAAGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTCAACGAATGAGACAGGATTCTAGAAAAGTCTCTAAGAGAAGT  650

seq1  TAACTTTGACATTAACATCAACAGACTAAAGTGGGGCCCAGGAAATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGACATTAACATCAACAGACTAAAGTGGGGCCCAGGAAATATGT  700

seq1  CAGCAGATAAAGGCACTTGCCACCAAGCCTGAGACCTTAGTTTCCTTCCC  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGCAGATAAAGGCACTTGCCACCAAGCCTGAGACTTTAGTTTCCTTCCC  750

seq1  AGGACCCACATGATGGAAGGCAAAAACTGGCTCCTACAAGCCAACCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCACATGATGGAAGGCAAAAACTGGCTCCTACAAGCCAACCACAG  800

seq1  CAACAAACTTGCCATGATGAATGCGCACAAGTGTGCCCACGCATGTGTGT  850
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAACAAACTTGCCATGATGAATGCGCACAAGTGTGCTCACGCATGTGTGT  850

seq1  ACGCACATGTAATTAATTTTTAATTATCCAAACAGCTATTTTAACTGAGT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACGCACATGTAATTAA-TTTTAATTATCCAAACAGCTATTTTAACTGAGT  899

seq1  TTGAAGTAATTTTCACTGGTACGGCAGCATAACACTTACTTATCGGGAG-  949
      |||||||||||||||||||| ||||||||| |||||||||||||||||| 
seq2  TTGAAGTAATTTTCACTGGT-CGGCAGCATTACACTTACTTATCGGGAGA  948

seq1  AGCTAGTCTTGGATG-TTTAG-AGAAACTTTTACCAGGAAAGAATTTACA  997
      |||| ||| |||||| ||||| ||||||||||||||| |||||| |||||
seq2  AGCTTGTC-TGGATGTTTTAGAAGAAACTTTTACCAGAAAAGAA-TTACA  996

seq1  TGA-CTGGAC-TCTAGGCAGC  1016
      ||| |||||| ||||||||||
seq2  TGACCTGGACTTCTAGGCAGC  1017