BAC Information

Click to search

BAC

Clone NameB6Ng01-002N08
Chromosome9 (Build37)
Map Location 31,805,011 - 31,934,019
singlet/doubletdoublet
Overlap geneLOC666619, LOC666622
Upstream geneZbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N08.bB6Ng01-002N08.g
ACCDH840740DH840741
length3021,105
definitionDH840740|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N08, 5' end.DH840741|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,933,718 - 31,934,019)(31,805,011 - 31,806,128)
sequence
acagctgtaacccagaacttgcgagtcaaggccctcctgtgctgctacaa
ggtaagtttgaaaccagccaggactacaaagagaaatattaaaaagccaa
tagtagcagcaaccctttatgaggcttgtgtgcttgtgtgggggggaagg
ggggtccgcaaacatattatattacttatattatttagtataaaaatata
aaaaagtacctctgggcatgtgtatgggggagtttccaaagagggaaaaa
aagagaaaacaaaagttaaaaatgggcattatcattctatggctgaggtg
tc
gaattccattgtgccactatttccagccacgctgagcctgttcggggcat
ttgttacaacactgacgaattaagaatctttagtttctttgattctccaa
agcagctgcttccaagtctccagttttgaacctttctttcacagaaatct
ttaggatgccacttacaaccaccgttcctcacagaggtaggaagcaaggc
ctcagtaggtcaaactgtagaaagggatcttgaggggaaaggaagtagag
cgggctacacgcctgcctttccatccgatgaattcagtttgctggcacgt
tctaagtccgctatgcactgtgatgcggcactaaaaatagctccgagctt
acttccctcctttccagcctgtagtcccccagacagaggccctgctgtct
gctagtctgcgctggaattagcccacggtgtcagcactgtgctgcatccc
tgccaccggaggctgccgccttttccaagctcctgtgccctttggttacc
tgtgagcaggaggacggccggccacacccgtccttactgatgtaaaggat
gtcatgggctgactcacactgtctgtgttatttcagacagcaggctgttc
ctgcccccaccacctctctgcgttgcagccttcccttctctgtaaccttc
cccactctcccgtgcgtccaggaaacctcagcctcacgactcccctgctg
taatctgtttctttctctcagctgccatctttgctactgtctgcccagct
atggactctcaagctgtgttaatgactcttggacaggtttatatactttt
tgagtttttgagtttctagagataatctgtatgtttcccttcaccctcat
ccagacatgccaggaccattattactaagggtgaagccactgcccctggg
aatcaaagtgtgttaatatattcatggtgccaagggtttgtaccattaat
gcacaaaggagtttggtaaagatcaattaaactaaatctagaatataatg
tttaacacttttttttttgatttcagaaaggtttctctgtgtagttcttg
ctgttctgaactcactttgtaagaacagctagctaatccaagctcaaggg
atact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31933718_31934019
seq2: B6Ng01-002N08.b_52_353 (reverse)

seq1  GACACCTCAGCCATAGAATGATACTGCCCATTTTTAACATGTGTTTTCAC  50
      ||||||||||||||||||||||| |||||||||||||| | ||||||| |
seq2  GACACCTCAGCCATAGAATGATAATGCCCATTTTTAACTTTTGTTTTCTC  50

seq1  AACTCAGCCCACTTTAGAAACTCCCCCATACACATGCCCAGAGGTACTTT  100
         |   ||| |||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCTCTTTGGAAACTCCCCCATACACATGCCCAGAGGTACTTT  100

seq1  TTTATATTTTTATACTAAATAATATAAGTAATATAATATGTTTGCGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTTATACTAAATAATATAAGTAATATAATATGTTTGCGGACC  150

seq1  CCCCTTCCCCCCCACACAAGCACACAAGCCTCATAAAGGGTTGCTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCCCCCACACAAGCACACAAGCCTCATAAAGGGTTGCTGCTAC  200

seq1  TATTGGCTTTTTAATATTTCTCTTTGTAGTCCTGGCTGGTTTCAAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTTTTTAATATTTCTCTTTGTAGTCCTGGCTGGTTTCAAACTTA  250

seq1  CCTTGTAGCAGCACAGGAGGGCCTTGACTCGCAAGTTCTGGGTTACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGCAGCACAGGAGGGCCTTGACTCGCAAGTTCTGGGTTACAGCT  300

seq1  GT  302
      ||
seq2  GT  302

seq1: chr9_31805011_31806128
seq2: B6Ng01-002N08.g_67_1171

seq1  GAATTCCATTGTGCCACTATTTCCAGCCACGCTGAGCCTGTTCGGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTGCCACTATTTCCAGCCACGCTGAGCCTGTTCGGGGCAT  50

seq1  TTGTTACAACACTGACGAATTAAGAATCTTTAGTTTCTTTGATTCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAACACTGACGAATTAAGAATCTTTAGTTTCTTTGATTCTCCAA  100

seq1  AGCAGCTGCTTCCAAGTCTCCAGTTTTGAACCTTTCTTTCACAGAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCTTCCAAGTCTCCAGTTTTGAACCTTTCTTTCACAGAAATCT  150

seq1  TTAGGATGCCACTTACAACCACCGTTCCTCACAGAGGTAGGAAGCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGCCACTTACAACCACCGTTCCTCACAGAGGTAGGAAGCAAGGC  200

seq1  CTCAGTAGGTCAAACTGTAGAAAGGGATCTTGAGGGGAAAGGAAGTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGGTCAAACTGTAGAAAGGGATCTTGAGGGGAAAGGAAGTAGAG  250

seq1  CGGGCTACACGCCTGCCTTTCCATCCGATGAATTCAGTTTGCTGGCACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTACACGCCTGCCTTTCCATCCGATGAATTCAGTTTGCTGGCACGT  300

seq1  TCTAAGTCCGCTATGCACTGTGATGCGGCACTAAAAATAGCTCCGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCCGCTATGCACTGTGATGCGGCACTAAAAATAGCTCCGAGCTT  350

seq1  ACTTCCCTCCTTTCCAGCCTGTAGTCCCCCAGACAGAGGCCCTGCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCCTTTCCAGCCTGTAGTCCCCCAGACAGAGGCCCTGCTGTCT  400

seq1  GCTAGTCTGCGCTGGAATTAGCCCACGGTGTCAGCACTGTGCTGCATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTGCGCTGGAATTAGCCCACGGTGTCAGCACTGTGCTGCATCCC  450

seq1  TGCCACCGGAGGCTGCCGCCTTTTCCAAGCTCCTGTGCCCTTTGGTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCGGAGGCTGCCGCCTTTTCCAAGCTCCTGTGCCCTTTGGTTACC  500

seq1  TGTGAGCAGGAGGACGGCCGGCCACACCCGTCCTTACTGATGTAAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAGGAGGACGGCCGGCCACACCCGTCCTTACTGATGTAAAGGAT  550

seq1  GTCATGGGCTGACTCACACTGTCTGTGTTATTTCAGACAGCAGGCTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGCTGACTCACACTGTCTGTGTTATTTCAGACAGCAGGCTGTTC  600

seq1  CTGCCCCCACCACCTCTCTGCGTTGCAGCCTTCCCTTCTCTGTAACCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCACCACCTCTCTGCGTTGCAGCCTTCCCTTCTCTGTAACCTTC  650

seq1  CCCACTCTCCCGTGCGTCCAGGAAACCTCAGCCTCACGACTCCCCTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCCCGTGCGTCCAGGAAACCTCAGCCTCACGACTCCCCTGCTG  700

seq1  TAATCTGTTTCTTTCTCTCAGCTGCCATCTTTGCTACTGTCTGCCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTTTCTTTCTCTCAGCTGCCATCTTTGCTACTGTCTGCCCAGCT  750

seq1  ATGGACTCTCAAGCTGTGTTAATGACTCTTGGACAGGTTTATATACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCTCAAGCTGTGTTAATGACTCTTGGACAGGTTTATATACTTTT  800

seq1  TGAGTTTTTGAGTTTCTAGAGATAATCTGTATGTTTCCCTTCACCCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTGAGTTTCTAGAGATAATCTGTATGTTTCCCTTCACCCTCAT  850

seq1  CCAGACATGCCAGGACCATTATTACTAAGGGTGAAGCCACTGCCCCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATGCCAGGACCATTATTACTAAGGGTGAAGCCACTGCCCCTGGG  900

seq1  AATCAAAGTGTGTTAATATATTCATGGTGCCAAGGGTTTGTACCATTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTGTGTTAATATATTCATGGTGCCAAGGGTTTGTACCATTAAT  950

seq1  GGCACAAAGGAGTTTGGTAAAGATCAATTAAACCTAAATTCTAGAATATA  1000
       ||||||||||||||||||||||||||||||| ||||| |||||||||| 
seq2  -GCACAAAGGAGTTTGGTAAAGATCAATTAAA-CTAAA-TCTAGAATAT-  996

seq1  AATGTTTAAACACTTTTTCTTTTGATTTTCAAGACAGGGTTTCTCTGTGT  1050
      ||||||| |||||||||| |||||||||   ||| | |||||||||||||
seq2  AATGTTT-AACACTTTTTTTTTTGATTT--CAGA-AAGGTTTCTCTGTGT  1042

seq1  AGTCTTGGCTGTTCTGGAACTCACTCTGT-AGACCAGGCTAGCCTTAAAT  1099
      |||  | |||||||| ||||||||| ||| ||| || ||||||  |||  
seq2  AGTTCTTGCTGTTCT-GAACTCACTTTGTAAGAACA-GCTAGC--TAA--  1086

seq1  CCCAGGCTCAAGGGATACT  1118
       ||| ||||||||||||||
seq2  TCCAAGCTCAAGGGATACT  1105