BAC Information

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BAC

Clone NameB6Ng01-003I02
Chromosome9 (Build37)
Map Location 41,129,925 - 41,284,622
singlet/doubletdoublet
Overlap genenone
Upstream geneGramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003I02.bB6Ng01-003I02.g
ACCDH841197DH841198
length9751,033
definitionDH841197|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I02, 5' end.DH841198|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,283,643 - 41,284,622)(41,129,925 - 41,130,960)
sequence
gaattccaggtgacagaggaaggagagatatcaaacacttcacaaatggc
ctactctgccttccccatctgacacactcacagctgaggagaagcagaaa
gaatatggctacaggtgtcaaagccagctaatgttctcataggcaacctc
cattagcctgatccaagacacagacccaagtctatgtctgacacattttg
gtgaaaaaaaaagaatcacaagtgacctggaaagaacattctagaagggg
ggagattacgacgggattattattatcacagcctgtcatttgcttcttct
aaatagtcccaccatatgcccaagacatgacattgactcctgtgtccagg
acacagacatctcactcccccaggcatcaatcacttatctgcatgagaaa
ccgagctgaggctagaaaaagagcatttgatgctgtcaaaaaagggagcg
aatatgaagtgttccatttatcaaagagattagttctaaaagtctgggga
gctacgtgtacacaagtaggagactgggttatgggtgttgacttacatgc
atactcctctctcccggactcagcaaactccctgctgagagtagcaaggc
tctattaactgattaattataattaatgccaacttttatttagctagcaa
ttataatctattaagagcatttcttcgcatcctcttacttattcagtctt
tggaacaatcctgtaacgcttgtcagtaatatattattatctcccttttt
agacaaagaaaaggaaactccggggtttcctcgcttagctatccccaccg
ataatggctagtttctagaccagaaacacagaattctgactgccggtcca
ctcccttgaggggctgtggaaacccaaaggaaaaaaggaaagtgggaagt
gttggttctgaattgaaagaacccggaaaagcctgctgaccaaatttctt
cagtttaggtcaaagtacggagtag
gaattcctctggatccctctctgagttgctttgatttcacagccccaaga
cccaacgtgtgggtcttgttcacttccaaagacaatctgtttccactgta
catgagagtagaagaaacaatcagtgggtgtgttgagaggcaaatgaaat
tactgtcatttgtacctgggacaagtcttcatgtattacctgatcctgaa
tcccttctccttcaaggtgtactggctagttttgagtcaacttgacacag
ctggagttatcacagagaaaggagcttcagttgaggaaacgcctccatga
gatacaactgtcaggcattttctcaattagtgatcaagggggaaaggccc
cttgtgggtgggaccatatctgggctggtagtcttgggctctataagaga
gcaggatgagcaagccaggggaagcaagccagtaaagaacatccctccat
ggcctctgcatcagctcttgcttcctgacctgtttgagttccagtcctga
cttccttggtgatgaacagcagtatggaagtataagctgaataaaccctt
tcctccccaacttgcttcttggtcatgatgttttatccaggaatagaaac
catgactaagacacaagggaacccctaaaacttcagtttttgtgtccagc
aatcctttaaatgttatctctaatgatttattttttcatattttcccttt
ctggaaagatctattgttttcataaatatttattcatttcataaattgtt
ctcttgggaacacatcctctcctttactcaatgggggtctagattggtca
actgattttaatcttctgttggggttgcagcctttggacctctgactaga
caccctctgttccttttagacagtatatcaagccaccccattgctcactg
cccactatcttttctctgaattgataaaaaaaatatgtgcttcaaaacat
ttccataatgtccattcgtcatgcaggaagtacagaatcatttcttgcaa
gcccaaaccttctgagtgctttaaaattcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41283643_41284622
seq2: B6Ng01-003I02.b_40_1014 (reverse)

seq1  CTACTCC-TACTTTGACCTAAACTGGAAGGAATTCTGGTCTGCAGGCTTT  49
      ||||||| |||||||||||||||| |||| |||| ||||| |||||||||
seq2  CTACTCCGTACTTTGACCTAAACT-GAAGAAATT-TGGTCAGCAGGCTTT  48

seq1  TCCGGGTTCTTTCACTTCTGAACCAACGCTTCCCACTTTCCCTTTCTTCC  99
      |||||||||||||| ||| |||||||| ||||||||||| ||||| ||||
seq2  TCCGGGTTCTTTCAATTCAGAACCAACACTTCCCACTTT-CCTTTTTTCC  97

seq1  TTTGGGTTTTCCACAGCCCCTCTAGGGAGTGGACCGGCAGTCAGAAATTC  149
      |||||| ||||||||||||||| ||||||||||||||||||||| |||||
seq2  TTTGGG-TTTCCACAGCCCCTCAAGGGAGTGGACCGGCAGTCAG-AATTC  145

seq1  TGTG-TTCTGGTCTAG-AACTTGCCATTTATCGGTGGGATTAGCTTAAGC  197
      |||| ||||||||||| |||| |||| |||||||||||  |||| |||||
seq2  TGTGTTTCTGGTCTAGAAACTAGCCA-TTATCGGTGGGGATAGC-TAAGC  193

seq1  GAGGAAACCCCGGAGTTTCCTTTTCCTTTGTCTAAAAAGGGAGATAATAA  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGGAAACCCCGGAGTTTCCTTTT-CTTTGTCTAAAAAGGGAGATAATAA  242

seq1  TATATTACTGACAAGCCTTACAGGATTGTTCCAAAGACTGAATAAGTAAG  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATATTACTGACAAGCGTTACAGGATTGTTCCAAAGACTGAATAAGTAAG  292

seq1  AGGATGCGAAGAAATGCTCTTAATAGATTATAATTGCTAGCTAAATAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCGAAGAAATGCTCTTAATAGATTATAATTGCTAGCTAAATAAAA  342

seq1  GTTGGCATTAATAATAATTAATCAGTTAATAGAGCCTTGCTACTCTCAGC  397
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATTAATTATAATTAATCAGTTAATAGAGCCTTGCTACTCTCAGC  392

seq1  AGGGAGTTTGCTGAGTCTGGGAGAGAGGAGTATGCATGTAAGTCAACACC  447
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTGCTGAGTCCGGGAGAGAGGAGTATGCATGTAAGTCAACACC  442

seq1  CATAACCCAGTCTCCTACTTGTGTACACGTAGCTCCCCAGACTTTTAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCAGTCTCCTACTTGTGTACACGTAGCTCCCCAGACTTTTAGAA  492

seq1  CTAATCTCTTTGATAAATGGAACACTTCATATTCGCTCCCTTTTTTGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCTTTGATAAATGGAACACTTCATATTCGCTCCCTTTTTTGACA  542

seq1  GCATCAAATGCTCTTTTTCTAGCCTCAGCTCGGTTTCTCATGCAGATAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATGCTCTTTTTCTAGCCTCAGCTCGGTTTCTCATGCAGATAAG  592

seq1  TGATTGATGCCTGGGGGAGTGAGATGTCTGTGTCCTGGACACAGGAGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGCCTGGGGGAGTGAGATGTCTGTGTCCTGGACACAGGAGTCA  642

seq1  ATGTCATGTCTTGGGCATATGGTGGGACTATTTAGAAGAAGCAAATGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTCTTGGGCATATGGTGGGACTATTTAGAAGAAGCAAATGACA  692

seq1  GGCTGTGATAATAATAATCCCGTCGTAATCTCCCCCCTTCTAGAATGTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATAATAATAATCCCGTCGTAATCTCCCCCCTTCTAGAATGTTC  742

seq1  TTTCCAGGTCACTTGTGATTCTTTTTTTTTCACCAAAATGTGTCAGACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTCACTTGTGATTCTTTTTTTTTCACCAAAATGTGTCAGACAT  792

seq1  AGACTTGGGTCTGTGTCTTGGATCAGGCTAATGGAGGTTGCCTATGAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGTCTGTGTCTTGGATCAGGCTAATGGAGGTTGCCTATGAGAA  842

seq1  CATTAGCTGGCTTTGACACCTGTAGCCATATTCTTTCTGCTTCTCCTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTGGCTTTGACACCTGTAGCCATATTCTTTCTGCTTCTCCTCAG  892

seq1  CTGTGAGTGTGTCAGATGGGGAAGGCAGAGTAGGCCATTTGTGAAGTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGTGTCAGATGGGGAAGGCAGAGTAGGCCATTTGTGAAGTGTT  942

seq1  TGATATCTCTCCTTCCTCTGTCACCTGGAATTC  980
      |||||||||||||||||||||||||||||||||
seq2  TGATATCTCTCCTTCCTCTGTCACCTGGAATTC  975

seq1: chr9_41129925_41130960
seq2: B6Ng01-003I02.g_66_1098

seq1  GAATTCCTCTGGATCCCTCTCTGAGTTGCTTTGATTTCACAGCCCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGATCCCTCTCTGAGTTGCTTTGATTTCACAGCCCCAAGA  50

seq1  CCCAACGTGTGGGTCTTGTTCACTTCCAAAGACAATCTGTTTCCACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACGTGTGGGTCTTGTTCACTTCCAAAGACAATCTGTTTCCACTGTA  100

seq1  CATGAGAGTAGAAGAAACAATCAGTGGGTGTGTTGAGAGGCAAATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGTAGAAGAAACAATCAGTGGGTGTGTTGAGAGGCAAATGAAAT  150

seq1  TACTGTCATTTGTACCTGGGACAAGTCTTCATGTATTACCTGATCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCATTTGTACCTGGGACAAGTCTTCATGTATTACCTGATCCTGAA  200

seq1  TCCCTTCTCCTTCAAGGTGTACTGGCTAGTTTTGAGTCAACTTGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCTTCAAGGTGTACTGGCTAGTTTTGAGTCAACTTGACACAG  250

seq1  CTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAACGCCTCCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAACGCCTCCATGA  300

seq1  GATACAACTGTCAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACTGTCAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCC  350

seq1  CTTGTGGGTGGGACCATATCTGGGCTGGTAGTCTTGGGCTCTATAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGTGGGACCATATCTGGGCTGGTAGTCTTGGGCTCTATAAGAGA  400

seq1  GCAGGATGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCAT  450

seq1  GGCCTCTGCATCAGCTCTTGCTTCCTGACCTGTTTGAGTTCCAGTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCATCAGCTCTTGCTTCCTGACCTGTTTGAGTTCCAGTCCTGA  500

seq1  CTTCCTTGGTGATGAACAGCAGTATGGAAGTATAAGCTGAATAAACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGTGATGAACAGCAGTATGGAAGTATAAGCTGAATAAACCCTT  550

seq1  TCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTATCCAGGAATAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTATCCAGGAATAGAAAC  600

seq1  CATGACTAAGACACAAGGGAACCCCTAAAACTTCAGTTTTTGTGTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTAAGACACAAGGGAACCCCTAAAACTTCAGTTTTTGTGTCCAGC  650

seq1  AATCCTTTAAATGTTATCTCTAATGATTTATTTTTTCATATTTTCCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTAAATGTTATCTCTAATGATTTATTTTTTCATATTTTCCCTTT  700

seq1  CTGGAAAGATCTATTGTTTTCATAAATATTTATTCATTTCATAAATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGATCTATTGTTTTCATAAATATTTATTCATTTCATAAATTGTT  750

seq1  CTCTTGGGAACACATCCTCTCCTTTACTCAAT-GGGGTCTAGATTGGTCA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTTGGGAACACATCCTCTCCTTTACTCAATGGGGGTCTAGATTGGTCA  800

seq1  ACTGATTTTAACCTTCTGTTGGGGTTGCAGCCTTTGGACCTCTGACTAGA  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTAATCTTCTGTTGGGGTTGCAGCCTTTGGACCTCTGACTAGA  850

seq1  CACCCTCTGTTCCTTTTAGACAGTATATCAAGCCACCCCATTGCTCACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTGTTCCTTTTAGACAGTATATCAAGCCACCCCATTGCTCACTG  900

seq1  CCCACTATCTTTTCTCTGAAATTGATAAAAAAAATATGTGCTTCAAAACA  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCACTATCTTTTCTCTG-AATTGATAAAAAAAATATGTGCTTCAAAACA  949

seq1  TTTCCATAATGTCCATTCGTCATGCAGGAAGCACAAGATCATTTCTTGCA  999
      ||||||||||||||||||||||||||||||| |||  |||||||||||| 
seq2  TTTCCATAATGTCCATTCGTCATGCAGGAAGTACAGAATCATTTCTTGC-  998

seq1  AAGCCCAAACCTTCTTGAGTGCTTTAAAAATTCAATG  1036
      |||||||||||||| |||||||||| |||||||||||
seq2  AAGCCCAAACCTTC-TGAGTGCTTT-AAAATTCAATG  1033