BAC Information

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BAC

Clone NameB6Ng01-003I23
Chromosome1 (Build37)9 (Build37)
Map Location 149,687,151 - 149,687,393108,562,583 - 108,563,037
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB830045N13Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003I23.bB6Ng01-003I23.g
ACCDH841234DH841235
length937923
definitionDH841234|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I23, 5' end.DH841235|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,687,151 - 149,687,393)(108,562,583 - 108,563,037)
sequence
gaattctacactaaagccttctgaccctgggtttctttttgattggtggt
ttttaatgacttcttcatttctttttttttttttttttccaattttttcc
ttttttttaaaaattaggtattttcttcatttccatttaaaattctatcc
tgaaagtcccctataccatccccacccctgttcccctaccaacccacttc
ttggccccggtgttccactgtactggagcatataaagtttgcaagaccaa
gggggctctcttcccaatgatagccaactaggccatcttctgctacatat
gcagctagagacatgagctctgggggcagtgattaattcctattgttgtt
ccacatataggggtgcatatcccttgagctccttgggtactttatcaaga
tcctccaatggggaccctgtgttccaaccaatacctgacggtgagcatcc
acttctgtgtttgccaggcactggcatagcctcacaagagacagctatat
tagggtcctgtcagcaaaatcttgctggcatatgcaatagtgcctgcgtt
tggtggccgattatgggatggaccctggagtggggcagtctctgggaggt
ccatcctttcctctcagatccaaactttgtctctgtaactccttccatgg
gtgttttattcccaattctaagaaggggcaaagtggtctttgttctttgg
tctttggtcttcgttcttcttgagtttcatgtgttttgcaaattgtatct
tgggtattctaggtttctgggctaatatccactgatcagtgagtgcatat
catatgagttcttttctgattggtttacctcagtcaggatcataccctcc
agatcaatccatttgcctaggaatttcataaattcattctttttatagct
gagtagtactccatttgtaaatgtaccacattttctg
gaattctctgtttagctgtgtaccccattttttgattgtgttgtttggtt
ttttggaggttagcttttttgaattcttcatatattttgggtactagccc
tctattggatgaaggatgagtgaagtttgttttttttttccccaatctgt
agattgtcagtttttcctattcatggtatcttttgccttacagtttttct
tttttataaggtcccatttatcaattgttgatcttagagcctgagccatt
ggagttctgtttaggaaatttccccctatgccactttcttttccattaaa
ttcagtatatccagtttacattgaggtctttgatccacttggacttgagc
tttgtgcaaggtgatagataatggatctattttcatttctctacatacag
actgccagtattaacgagtgaaattagatcaccaagagagtgggaaccct
cacaacccctgaaacccttccccttctagtgtttagagatcaaatagatg
aggaagggcctacaaaataagcaaagaagtaaccaagaagtaggagacca
aagaatctgcaatcactatgagcaagggcttcaaaggggatgggagagtc
aggaacactagaatcaggaagtgatggcggttgattggtcccaaagacct
atgggaaaatggaggacaaggaagttgaaacaatacacaaaaaaactgtc
atatagccgggcgtggtggtgcacgcctttaatcccagcactcgggaggc
aaaggcaggcggatttctgagttcgaggccagcctggtctgcagagtgag
tttcaggacagccagggctatacagagaaaccctgtcttgaaaaaccaaa
aaaaaaaagaaaaagaaaaaccctgtgaccatgcacagccacagtagttt
ttaatagatagaaatgcagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149687151_149687393
seq2: B6Ng01-003I23.b_118_589

seq1  CTTTCTTTTTTTTTTTTTTCCAATTTTT---------------ATTAGGT  35
      |||| |||||||||||||||||||||||               |||||||
seq2  CTTT-TTTTTTTTTTTTTTCCAATTTTTTCCTTTTTTTTAAAAATTAGGT  49

seq1  ATTT-----------------------------------CCCT------T  44
      ||||                                   ||||      |
seq2  ATTTTCTTCATTTCCATTTAAAATTCTATCCTGAAAGTCCCCTATACCAT  99

seq1  ACCCACCC----------ACTA--CCACTTCTTGGCCCTGATGTTCCCGT  82
       |||||||          || |  |||||||||||||| | ||||||  |
seq2  CCCCACCCCTGTTCCCCTACCAACCCACTTCTTGGCCCCGGTGTTCCACT  149

seq1  GTACTGGGGCCTATAAAGTTTGCAAGACCAAGG-----------------  115
      ||||||| || ||||||||||||||||||||||                 
seq2  GTACTGGAGCATATAAAGTTTGCAAGACCAAGGGGGCTCTCTTCCCAATG  199

seq1  --------------------------------------------------  115
                                                        
seq2  ATAGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGCT  249

seq1  --------------------------------------------------  115
                                                        
seq2  CTGGGGGCAGTGATTAATTCCTATTGTTGTTCCACATATAGGGGTGCATA  299

seq1  ---------------------------------------------ACCTG  120
                                                    ||||
seq2  TCCCTTGAGCTCCTTGGGTACTTTATCAAGATCCTCCAATGGGGACCCTG  349

seq1  TGTTCCATCCAATAGCTGACTATGAGCATCCACTTCTGTGTTTGCCAGGC  170
      ||||||| |||||| |||||  ||||||||||||||||||||||||||||
seq2  TGTTCCAACCAATACCTGACGGTGAGCATCCACTTCTGTGTTTGCCAGGC  399

seq1  ACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCTAAA  220
      ||||||||||||||||||||||||||||||| |||||||| ||||| |||
seq2  ACTGGCATAGCCTCACAAGAGACAGCTATATTAGGGTCCTGTCAGCAAAA  449

seq1  TCTTGCTGATGTATGCAATAGTG  243
      ||||||||   ||||||||||||
seq2  TCTTGCTGGCATATGCAATAGTG  472

seq1: chr9_108562583_108563037
seq2: B6Ng01-003I23.g_472_938 (reverse)

seq1  GGTTTTTCTTTTTC-TTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTG  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTTTTTCTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTG  50

seq1  TATAGCCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCGA  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAGCCCTGGCTGTCCTGAAACTCACTCTGCAGACCAGGCTGGCCTCGA  100

seq1  ACTCAGAAATCCGCCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCGCCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGT  150

seq1  GCACCACCACGCCCGGCTATATGACAGTTTTTTTGTGTATTGTTTCAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACGCCCGGCTATATGACAGTTTTTTTGTGTATTGTTTCAACT  200

seq1  TCCTTGTCCTCCATTTTCCCATAGGTCTTTGGGACCAATCAACCGCCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTCCATTTTCCCATAGGTCTTTGGGACCAATCAACCGCCATC  250

seq1  ACTTCCTGATTCTAGTGTTCCTGACTCTCCCATCCCCTTTGAAGCCCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGATTCTAGTGTTCCTGACTCTCCCATCCCCTTTGAAGCCCTTG  300

seq1  CTCATAGTGATTGCAGATTCTTTGGTCTCC-----------TACTTCTTT  338
      ||||||||||||||||||||||||||||||           |||||||||
seq2  CTCATAGTGATTGCAGATTCTTTGGTCTCCTACTTCTTGGTTACTTCTTT  350

seq1  GCTTATTTTGTAGGCCCTTCCTCATCTATTTGATCTCTAAACACTAGAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTGTAGGCCCTTCCTCATCTATTTGATCTCTAAACACTAGAAG  400

seq1  GGGAAGGGTTTCAGGGGTTGTGAGGGTTCCCACTCTCTTGGTGATCTAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGTTTCAGGGGTTGTGAGGGTTCCCACTCTCTTGGTGATCTAAT  450

seq1  TTCACTCGTTAATACTG  455
      |||||||||||||||||
seq2  TTCACTCGTTAATACTG  467