BAC Information

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BAC

Clone NameB6Ng01-003M22
Chromosome9 (Build37)
Map Location 110,449,581 - 110,586,572
singlet/doubletdoublet
Overlap geneSetd2, Nradd, Nbeal2, Ccdc12
Upstream geneFbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M22.bB6Ng01-003M22.g
ACCDH841403DH841404
length1,1341,057
definitionDH841403|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M22, 5' end.DH841404|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,449,581 - 110,450,746)(110,585,508 - 110,586,572)
sequence
gaattccatttgtcgcatagtgaaagttatactgctgggttttttttttt
ttatttccttgacaatcattttaaattataatgacaatttgaaagtattt
gttatagtaataattgctttgttcttttataggcaaagattgaaaatgtg
cagaaaacaggtttcatcaaaggaccagtgttcaaaggtgttgcttcaag
tcgatttttgcccaaaggcacgaagacaaaagttaatttggaggaacagg
gacggcaaaaggtgtcattcagcttcagttttacaaagaaaactttacag
aatagatttctcactgcgcttagcaatgaaaagcaaagtgattctccaaa
ctccccagctccccctcttcaagtagactcaaaccctaaagttaaaatgg
acgctggagatacttttcctgctacagaagaatcttcgccaccaaaatcg
agagtggaattgggcagaattcattttaagaaacatttgcttcatgtgac
atctaggccacagctggctgcaagtacaacagcagcatctccccttcctc
ctacaacacagttaccagcagtcttagcagagtcgatgatagactcacca
ccttcatctccacccccacctcctccacctccccaggcctcatcaccctc
accaccagcacagatatcagagccagtggccttgccgcaacccccagcaa
cagcactaatgacatcaccaccaggacctttaccaggagacgtagccgtg
agagctcagaaagaatcaccagttaaaagtggacccgaagttttagaggt
ggatacaaagcaagatattgtatctaatagtttggaagaacacacagttc
aaactttgaaggaacaagcagatcatctcctgcaaaagaagattcccata
ttgggaaggaagaagaggtttcagatggctctagatagcctcagttctaa
aaagcagttctaagagaaatcttcacaattgaaggcacatttctgatcag
agtctgatgaggattctgtacgactctcagtcaagatcacatgatttaat
ctccacagcaatgacaggaaggagattttagagagctcagcactcaaagt
gagggattggaatcatcagatcgaacgagagaga
gaattcaagtgtgacggggatccttaccccaggtacctggtcagactcga
ggggcaacgccccccccccccccacacacacacacacataccaggtttga
gagggtacagctttctggagaaaagcccagaatgcttttggattcttaga
gggcaaggttggaagggggcaatggcacacagacccagaacaaggaaggg
atggtattgacagcatgacaagaggcagtggctctctaggtggctgggga
gagtctctaaagtacacctcccttgtcctgcctgttaaagaatgaatggg
aggggcagggggcagagggagggcagaacagggaacaactggtacagatg
ggtgagcacacgtcctttccagtgcccaggacttcaccctccccagcagc
agcaggaaataaccaactggaaggttaggcagagggcacagcacaaacca
cagccccctttccctttccagggagccagactagaccatttcacctgggc
agcccagaactgaggctctgaactcccaaactcctgacgggcttctcctt
acaggaagccctgaggcatacaggaagcctacacctcaggcttggactga
ggtgaggacaaggaaaaccttataccaatccgcacccatgttggggttgc
aagcaaactgcaggaccctttttgggacaggtggccctggcggtacttca
gcagggacacttgaggcttaagtaaggggaccaggtccactgtcccatgc
acaccttctgctccatgatgcctactatgggaatgcttactggaatcctg
gccaaggttcaaatcctgctgcccacagtgatgggccaggctcatacctg
actcttgtgctatttttcctagggagtcaccaccacccacccagcacctt
ggttcaataaaactcagagagcggccgggcatggtggcacatgcctttaa
tccagcacttggaggcagaggcaggtggatttctgaattgagtcagcttg
gtctacaaagtgagtcaaggacagtcaggctatacagaggaaccttggtc
tgaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110449581_110450746
seq2: B6Ng01-003M22.b_48_1181

seq1  GAATTCCATTTGTCGCATAGTGAAAGTTATACTGCTGGGTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGTCGCATAGTGAAAGTTATACTGCTGGGTTTTTTTTTTT  50

seq1  TTATTTCCTTGACAATCATTTTAAATTATAATGACAATTTGAAAGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTGACAATCATTTTAAATTATAATGACAATTTGAAAGTATTT  100

seq1  GTTATAGTAATAATTGCTTTGTTCTTTTATAGGCAAAGATTGAAAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTAATAATTGCTTTGTTCTTTTATAGGCAAAGATTGAAAATGTG  150

seq1  CAGAAAACAGGTTTCATCAAAGGACCAGTGTTCAAAGGTGTTGCTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGGTTTCATCAAAGGACCAGTGTTCAAAGGTGTTGCTTCAAG  200

seq1  TCGATTTTTGCCCAAAGGCACGAAGACAAAAGTTAATTTGGAGGAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTTTTGCCCAAAGGCACGAAGACAAAAGTTAATTTGGAGGAACAGG  250

seq1  GACGGCAAAAGGTGTCATTCAGCTTCAGTTTTACAAAGAAAACTTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAAAAGGTGTCATTCAGCTTCAGTTTTACAAAGAAAACTTTACAG  300

seq1  AATAGATTTCTCACTGCGCTTAGCAATGAAAAGCAAAGTGATTCTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTCTCACTGCGCTTAGCAATGAAAAGCAAAGTGATTCTCCAAA  350

seq1  CTCCCCAGCTCCCCCTCTTCAAGTAGACTCAAACCCTAAAGTTAAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCTCCCCCTCTTCAAGTAGACTCAAACCCTAAAGTTAAAATGG  400

seq1  ACGCTGGAGATACTTTTCCTGCTACAGAAGAATCTTCGCCACCAAAATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGAGATACTTTTCCTGCTACAGAAGAATCTTCGCCACCAAAATCG  450

seq1  AGAGTGGAATTGGGCAGAATTCATTTTAAGAAACATTTGCTTCATGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAATTGGGCAGAATTCATTTTAAGAAACATTTGCTTCATGTGAC  500

seq1  ATCTAGGCCACAGCTGGCTGCAAGTACAACAGCAGCATCTCCCCTTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGCCACAGCTGGCTGCAAGTACAACAGCAGCATCTCCCCTTCCTC  550

seq1  CTACAACACAGTTACCAGCAGTCTTAGCAGAGTCGATGATAGACTCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACACAGTTACCAGCAGTCTTAGCAGAGTCGATGATAGACTCACCA  600

seq1  CCTTCATCTCCACCCCCACCTCCTCCACCTCCCCAGGCCTCATCACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTCCACCCCCACCTCCTCCACCTCCCCAGGCCTCATCACCCTC  650

seq1  ACCACCAGCACAGATATCAGAGCCAGTGGCCTTGCCGCAACCCCCAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCACAGATATCAGAGCCAGTGGCCTTGCCGCAACCCCCAGCAA  700

seq1  CAGCACTAATGACATCACCACCAGGACCTTTACCAGGAGACGTAGCCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAATGACATCACCACCAGGACCTTTACCAGGAGACGTAGCCGTG  750

seq1  AGAGCTCAGAAAGAATCACCAGTTAAAAGTGGACCCGAAGTTTTAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGAAAGAATCACCAGTTAAAAGTGGACCCGAAGTTTTAGAGGT  800

seq1  GGATACAAAGCAAGATATTGTATCTAATAGTTTGGAAGAACACACAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAAGCAAGATATTGTATCTAATAGTTTGGAAGAACACACAGTTC  850

seq1  AAACTTTGAAGGAACAAGCAGATCATCTCCTGCAAAAAGAAGATTCCCAT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTTTGAAGGAACAAGCAGATCATCTCCTGC-AAAAGAAGATTCCCAT  899

seq1  ATTGGGAAGGAAGAAGAGGTTTCAGATGGCTCTAAGATAAGCCTCAGTTC  950
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  ATTGGGAAGGAAGAAGAGGTTTCAGATGGCTCT-AGAT-AGCCTCAGTTC  947

seq1  TAAAAAAGCAAGTTCTAAGAAGAAATCTTCACAATTTGAAGGCACATTTC  1000
      | ||||||| ||||||||| |||||||||||||| |||||||||||||||
seq2  T-AAAAAGC-AGTTCTAAG-AGAAATCTTCACAA-TTGAAGGCACATTTC  993

seq1  TTGGTTCAGAGTCTGATGAAGATTCTGTACGGACTTCTTCCAGTCAAAGA  1050
      |  | |||||||||||||| |||||||||| ||| |||  ||||| ||||
seq2  T--GATCAGAGTCTGATGAGGATTCTGTAC-GAC-TCT--CAGTC-AAGA  1036

seq1  TCACATGATTTAAAATCTTCAACAAGCATTGACAAGGAAAGAGATTTTAA  1100
      |||||||||||  ||||| ||   |||| |||| ||||| ||||||||| 
seq2  TCACATGATTT--AATCTCCA--CAGCAATGAC-AGGAAGGAGATTTTA-  1080

seq1  GAAGAGCTCAGCACCTTCAAAAAGTGAGGATTTGGGGAAATCATCAAGAT  1150
        ||||||||||||  ||  |||||||||  ||||   ||||||| ||||
seq2  -GAGAGCTCAGCAC--TC--AAAGTGAGGGATTGG---AATCATC-AGAT  1121

seq1  CGAAAACAGAGAGAGA  1166
      ||||    ||||||||
seq2  CGAA---CGAGAGAGA  1134

seq1: chr9_110585508_110586572
seq2: B6Ng01-003M22.g_69_1125 (reverse)

seq1  TTTTTCAAGACAAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  50
      |||||||   ||||||| |||||||||| |||| ||||||| | ||||||
seq2  TTTTTCAGACCAAGGTTCCTCTGTATAG-CCTGACTGTCCTTG-ACTCAC  48

seq1  TTTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCACCTGCCTCTGCCTC  100
      ||||||||||| ||| | ||| ||||||||||||||||||||||||||| 
seq2  TTTGTAGACCAAGCT-GACTC-AATTCAGAAATCCACCTGCCTCTGCCT-  95

seq1  CCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGCCGCTCTCTTG  150
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CCAAGTGCT-GGATTAAAGGCATGTGCCACCATGCCCGGCCGCTCTC-TG  143

seq1  AGTTTTATTGAACCAAGGTGCTGGGTGGGTGGTGGTGACTCCCTAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTGAACCAAGGTGCTGGGTGGGTGGTGGTGACTCCCTAGGAAA  193

seq1  AATAGCACAAGAGTCAGGTATGAGCCTGGCCCATCACTGTTGGGCAGCAG  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAGCACAAGAGTCAGGTATGAGCCTGGCCCATCACTG-TGGGCAGCAG  242

seq1  GATTTGAACCTTGGCCAGGATTCCAGTAAGCATTCCCATAGTAGGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACCTTGGCCAGGATTCCAGTAAGCATTCCCATAGTAGGCATCA  292

seq1  TGGAGCAGAAGGTGTGCATGGGACAGTGGACCTGGTCCCCTTACTTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAAGGTGTGCATGGGACAGTGGACCTGGTCCCCTTACTTAAGC  342

seq1  CTCAAGTGTCCCTGCTGAAGTACCGCCAGGGCCACCTGTCCCAAAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTCCCTGCTGAAGTACCGCCAGGGCCACCTGTCCCAAAAAGGG  392

seq1  TCCTGCAGTTTGCTTGCAACCCCAACATGGGTGCGGATTGGTATAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGTTTGCTTGCAACCCCAACATGGGTGCGGATTGGTATAAGGTT  442

seq1  TTCCTTGTCCTCACCTCAGTCCAAGCCTGAGGTGTAGGCTTCCTGTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTCCTCACCTCAGTCCAAGCCTGAGGTGTAGGCTTCCTGTATGC  492

seq1  CTCAGGGCTTCCTGTAAGGAGAAGCCCGTCAGGAGTTTGGGAGTTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCTTCCTGTAAGGAGAAGCCCGTCAGGAGTTTGGGAGTTCAGAG  542

seq1  CCTCAGTTCTGGGCTGCCCAGGTGAAATGGTCTAGTCTGGCTCCCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTCTGGGCTGCCCAGGTGAAATGGTCTAGTCTGGCTCCCTGGAA  592

seq1  AGGGAAAGGGGGCTGTGGTTTGTGCTGTGCCCTCTGCCTAACCTTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGGGCTGTGGTTTGTGCTGTGCCCTCTGCCTAACCTTCCAGT  642

seq1  TGGTTATTTCCTGCTGCTGCTGGGGAGGGTGAAGTCCTGGGCACTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTTCCTGCTGCTGCTGGGGAGGGTGAAGTCCTGGGCACTGGAAA  692

seq1  GGACGTGTGCTCACCCATCTGTACCAGTTGTTCCCTGTTCTGCCCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGTGCTCACCCATCTGTACCAGTTGTTCCCTGTTCTGCCCTCCCT  742

seq1  CTGCCCCCTGCCCCTCCCATTCATTCTTTAACAGGCAGGACAAGGGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTGCCCCTCCCATTCATTCTTTAACAGGCAGGACAAGGGAGGT  792

seq1  GTACTTTAGAGACTCTCCCCAGCCACCTAGAGAGCCACTGCCTCTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTAGAGACTCTCCCCAGCCACCTAGAGAGCCACTGCCTCTTGTCA  842

seq1  TGCTGTCAATACCATCCCTTCCTTGTTCTGGGTCTGTGTGCCATTGCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAATACCATCCCTTCCTTGTTCTGGGTCTGTGTGCCATTGCCCC  892

seq1  CTTCCAACCTTGCCCTCTAAGAATCCAAAAGCATTCTGGGCTTTTCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACCTTGCCCTCTAAGAATCCAAAAGCATTCTGGGCTTTTCTCCA  942

seq1  GAAAGCTGTACCCTCTCAAACCTGGTATGTGTGTGTGTGTGTGGGGGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTACCCTCTCAAACCTGGTATGTGTGTGTGTGTGTGGGGGGGG  992

seq1  GGGGGGCGTTGCCCCTCGAGTCTGACCAGGTACCTGGGGTAAGGATCCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCGTTGCCCCTCGAGTCTGACCAGGTACCTGGGGTAAGGATCCCC  1042

seq1  GTCACACTTGAATTC  1065
      |||||||||||||||
seq2  GTCACACTTGAATTC  1057