BAC Information

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BAC

Clone NameB6Ng01-003N17
Chromosome9 (Build37)
Map Location 15,142,822 - 15,280,337
singlet/doubletdoublet
Overlap geneLOC100040375, LOC100039955
Upstream geneEndod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik
Downstream geneBC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N17.bB6Ng01-003N17.g
ACCDH841439DH841440
length1,1291,169
definitionDH841439|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N17, 5' end.DH841440|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,279,193 - 15,280,337)(15,142,822 - 15,144,003)
sequence
gaattctcatgtacactggcctttattgtctaaaccttgttcccaaattt
aaagttatggttaataaaaggctggagtctgtgattgggcagtagcgaaa
ggcagaacctgagaatccagtgaggggtctcaggagagaacaggagaaag
gaggggacagaagggagaacagggggctgccatgatgctgatgggtcatg
aatacatggccagaagaagtggcccttggggacaggctgatgtaacagaa
atagagagacatagacagcaagtaacacgggacttatggattagatgtac
attagaatagctcaaaacctgcccaatctaggcttaccgcttgtcaaata
aaataccaagcttttgtgtcgtttatgtgggctatattgattatataatc
cttgagggggggttccctttgcctaccttttgtatatgtgtacacatatg
tgctgatgtgtacatgagaagccagattttgaagtccttcgtgctacttc
gttactttccatattccgttttgggacagagtctctctctcgctgaattc
agagttccttggttgagctaggctggcaggccagcaagattgagggattt
acctgtctcattccccagatttgaggttacagacctgagctgccttccta
cccagctgatacgggtgctcgggatctgaacttaggtgcaagtgctgcac
ccttcaaggcaccttgccagggtaacccacacctttatgtcctattcaga
ctgctgctgttccatatctgtctctcaaggcccatgagttagaggctcgg
ttgcctgcctcagattatagcacttggaaatttctggatctttaggcttt
ttttttttttaacttttaaagttgaaatgattttcttttctttcttcatt
atttttgtttgttattgttttcaagacagggcttctctgtgtataaccct
ggctgtcttgtacctgctttgtacaacagctggccttgaacgcatagaga
ccctgctctgctcttgggtgctaggataaaggcatgcccagcctgaaatg
attttagtagcccaaagaaacacttttttatctttagctctatatacttg
gcacctagccagctctctctgtcttaacc
gaattcttgaggggatttgttggatctttgctgccaagggcactaaaaaa
acaaaactaacttcattacatttatgcaaattgtgttacatttacactca
gtcactgctataattatttagctaaaacaaaagcacaattttattttcag
taaaaggttagcagtatattcaacaataacttcttagtttaacaaccaag
tatatattttttcaacttaaattcaaatttagaccatttccaataacata
ataaatatatataaatttcaagtttaaatctcaggaggagactctgcttg
cttaggtgatggcagatgtataactcccaattagcttgtgactgcggtta
gtgtttaagtcatgcactataagattttatgttctgtgctagggaatgac
ccaaacagttcttagcaggcttcagaaaacagaacaaattttaaagcctt
cagagtaaggactctgttttcaaatcattcttgctaagacctgacgtgag
cttgtctgtcatcataaggaaaccctttcactctcaaaccagaaacaagt
attcttctacagagatggtacaaccttaactataaacagaactcaaaatt
ctttacaggagcaaattgtgatgaaagcacacgatgttttggtttaatca
aagaaaagactaggaacaccaaagaagtagaaaactggaaatttgtatat
tttcatccatattcaaagaaaaaaatctagcagaataaaaaggtagcaaa
cagttcagcacataaaaactaatgttcagcacagtgaaattcagatgtgc
ctgtcaacactgtccaggccactgcaacatctgcacacagtaccaaaagg
tactttgtcctttttagtctgcatattcaaaaggtaacttaactgcaccc
taccttaatgctatacagtaattttatcccgttccttattacacacacac
acacacacacacacacacacacacacacacacacacagcatatacttaag
tagtattttttgcctggtcattcgggttaactattagtctgtgacctacc
caattttacaacagattgaaccatccacccacccacccatgcatcatcat
attgtgtgtgtgggactaggattgtattaggcactctaaccattgaactt
cattgcaactactataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15279193_15280337
seq2: B6Ng01-003N17.b_46_1174 (reverse)

seq1  GGTTAAAGACAGGAGAGAGCTTGCTAGTGTGC--AGTATAATAGGAGCTA  48
      |||| |||||| ||||||||| ||||| ||||  ||||| ||| ||||||
seq2  GGTT-AAGACA-GAGAGAGCTGGCTAG-GTGCCAAGTAT-ATA-GAGCTA  45

seq1  GAAGATAAAAAAGTGTTTTCTTTTTGGCTACTAAAAATCATTTCAGGCTG  98
       |||||||||||||||||   ||| ||||||| |||||||||||||||||
seq2  -AAGATAAAAAAGTGTTT--CTTTGGGCTACT-AAAATCATTTCAGGCTG  91

seq1  GGCATGCCTTTAATCCTAGCACTCAGGAGGCAGAGGCAGGGTCTCTATGC  148
      ||||||||||| |||||||||| || || ||||| |||||||||||||||
seq2  GGCATGCCTTT-ATCCTAGCACCCAAGA-GCAGA-GCAGGGTCTCTATGC  138

seq1  GTTCAAGGCCAGCCTGTTGTACAAAGCAGGTACAAGACAGCCAGGGTTAT  198
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GTTCAAGGCCAG-CTGTTGTACAAAGCAGGTACAAGACAGCCAGGGTTA-  186

seq1  TACACAGAGAAGCCCTGTCTTGAAAAACAAATAACAAACAAAAAATAATG  248
      ||||||||||||||||||||||||||   |||||||||| ||||||||||
seq2  TACACAGAGAAGCCCTGTCTTGAAAA--CAATAACAAAC-AAAAATAATG  233

seq1  AAGAAAGAAAAAGAAAATCATTTCAACTTTAAAAGTTAAAAAAAAAAAAA  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAG-AAAAGAAAATCATTTCAACTTTAAAAGTTAAAAAAAAAAAAA  282

seq1  GCCTAAAGATCCAGAAATTTCCAAGTGCTATAATCTGAGGCAGGCAACCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGATCCAGAAATTTCCAAGTGCTATAATCTGAGGCAGGCAACCG  332

seq1  AGCCTCTAACTCATGGGCCTTGAGAGACAGATATGGAACAGCAGCAGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAACTCATGGGCCTTGAGAGACAGATATGGAACAGCAGCAGTCT  382

seq1  GAATAGGACATAAAGGTGTGGGTTACCCTGGCAAGGTGCCTTGAAGGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGACATAAAGGTGTGGGTTACCCTGGCAAGGTGCCTTGAAGGGTG  432

seq1  CAGCACTTGCACCTAAGTTCAGATCCCGAGCACCCGTATCAGCTGGGTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGCACCTAAGTTCAGATCCCGAGCACCCGTATCAGCTGGGTAG  482

seq1  GAAGGCAGCTCAGGTCTGTAACCTCAAATCTGGGGAATGAGACAGGTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGCTCAGGTCTGTAACCTCAAATCTGGGGAATGAGACAGGTAAA  532

seq1  TCCCTCAATCTTGCTGGCCTGCCAGCCTAGCTCAACCAAGGAACTCTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAATCTTGCTGGCCTGCCAGCCTAGCTCAACCAAGGAACTCTGAA  582

seq1  TTCAGCGAGAGAGAGACTCTGTCCCAAAACGGAATATGGAAAGTAACGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGAGAGAGAGACTCTGTCCCAAAACGGAATATGGAAAGTAACGAA  632

seq1  GTAGCACGAAGGACTTCAAAATCTGGCTTCTCATGTACACATCAGCACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACGAAGGACTTCAAAATCTGGCTTCTCATGTACACATCAGCACAT  682

seq1  ATGTGTACACATATACAAAAGGTAGGCAAAGGGAACCCCCCCTCAAGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACACATATACAAAAGGTAGGCAAAGGGAACCCCCCCTCAAGGAT  732

seq1  TATATAATCAATATAGCCCACATAAACGACACAAAAGCTTGGTATTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCAATATAGCCCACATAAACGACACAAAAGCTTGGTATTTTAT  782

seq1  TTGACAAGCGGTAAGCCTAGATTGGGCAGGTTTTGAGCTATTCTAATGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGCGGTAAGCCTAGATTGGGCAGGTTTTGAGCTATTCTAATGTA  832

seq1  CATCTAATCCATAAGTCCCGTGTTACTTGCTGTCTATGTCTCTCTATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATCCATAAGTCCCGTGTTACTTGCTGTCTATGTCTCTCTATTTC  882

seq1  TGTTACATCAGCCTGTCCCCAAGGGCCACTTCTTCTGGCCATGTATTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATCAGCCTGTCCCCAAGGGCCACTTCTTCTGGCCATGTATTCAT  932

seq1  GACCCATCAGCATCATGGCAGCCCCCTGTTCTCCCTTCTGTCCCCTCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATCAGCATCATGGCAGCCCCCTGTTCTCCCTTCTGTCCCCTCCTT  982

seq1  TCTCCTGTTCTCTCCTGAGACCCCTCACTGGATTCTCAGGTTCTGCCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTCTCTCCTGAGACCCCTCACTGGATTCTCAGGTTCTGCCTTT  1032

seq1  CGCTACTGCCCAATCACAGACTCCAGCCTTTTATTAACCATAACTTTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACTGCCCAATCACAGACTCCAGCCTTTTATTAACCATAACTTTAAA  1082

seq1  TTTGGGAACAAGGTTTAGACAATAAAGGCCAGTGTACATGAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAACAAGGTTTAGACAATAAAGGCCAGTGTACATGAGAATTC  1129

seq1: chr9_15142822_15144003
seq2: B6Ng01-003N17.g_67_1235

seq1  GAATTCTTGAGGGGATTTGTTGGATCTTTGCTGCCAAGGGCACTAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGGGATTTGTTGGATCTTTGCTGCCAAGGGCACTAAAAAA  50

seq1  ACAAAACTAACTTCATTACATTTATGCAAATTGTGTTACATTTACACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAACTTCATTACATTTATGCAAATTGTGTTACATTTACACTCA  100

seq1  GTCACTGCTATAATTATTTAGCTAAAACAAAAGCACAATTTTATTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCTATAATTATTTAGCTAAAACAAAAGCACAATTTTATTTTCAG  150

seq1  TAAAAGGTTAGCAGTATATTCAACAATAACTTCTTAGTTTAACAACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTAGCAGTATATTCAACAATAACTTCTTAGTTTAACAACCAAG  200

seq1  TATATATTTTTTCAACTTAAATTCAAATTTAGACCATTTCCAATAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTTTCAACTTAAATTCAAATTTAGACCATTTCCAATAACATA  250

seq1  ATAAATATATATAAATTTCAAGTTTAAATCTCAGGAGGAGACTCTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATATAAATTTCAAGTTTAAATCTCAGGAGGAGACTCTGCTTG  300

seq1  CTTAGGTGATGGCAGATGTATAACTCCCAATTAGCTTGTGACTGCGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTGATGGCAGATGTATAACTCCCAATTAGCTTGTGACTGCGGTTA  350

seq1  GTGTTTAAGTCATGCACTATAAGATTTTATGTTCTGTGCTAGGGAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAGTCATGCACTATAAGATTTTATGTTCTGTGCTAGGGAATGAC  400

seq1  CCAAACAGTTCTTAGCAGGCTTCAGAAAACAGAACAAATTTTAAAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGTTCTTAGCAGGCTTCAGAAAACAGAACAAATTTTAAAGCCTT  450

seq1  CAGAGTAAGGACTCTGTTTTCAAATCATTCTTGCTAAGACCTGACGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAGGACTCTGTTTTCAAATCATTCTTGCTAAGACCTGACGTGAG  500

seq1  CTTGTCTGTCATCATAAGGAAACCCTTTCACTCTCAAACCAGAAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTCATCATAAGGAAACCCTTTCACTCTCAAACCAGAAACAAGT  550

seq1  ATTCTTCTACAGAGATGGTACAACCTTAACTATAAACAGAACTCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACAGAGATGGTACAACCTTAACTATAAACAGAACTCAAAATT  600

seq1  CTTTACAGGAGCAAATTGTGATGAAAGCACACGATGTTTTGGTTTAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGAGCAAATTGTGATGAAAGCACACGATGTTTTGGTTTAATCA  650

seq1  AAGAAAAGACTAGGAACACCAAAGAAGTAGAAAACTGGAAATTTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGACTAGGAACACCAAAGAAGTAGAAAACTGGAAATTTGTATAT  700

seq1  TTTCATCCATATTCAAAGAAAAAAATCTAGCAGAATAAAAAGGTAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCATATTCAAAGAAAAAAATCTAGCAGAATAAAAAGGTAGCAAA  750

seq1  CAGTTCAGCACATAAAAACTAATGTTCAGCACAGTGAAATTCAGATGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGCACATAAAAACTAATGTTCAGCACAGTGAAATTCAGATGTGC  800

seq1  CTGTCAACACTGTCCAGGCCACTGCAACATCTGCACACAGTACCAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACACTGTCCAGGCCACTGCAACATCTGCACACAGTACCAAAAGG  850

seq1  TACTTTGTCCTTTTTAGTCTGCATATTCAAAAGGTAACTTAACTGCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTCCTTTTTAGTCTGCATATTCAAAAGGTAACTTAACTGCACCC  900

seq1  TACCTTAATGCTATACAGTAATTTTATCCCGTTCCTTAATTACACACACA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACCTTAATGCTATACAGTAATTTTATCCCGTTCCTT-ATTACACACACA  949

seq1  CACACACACACACACACACACACACACACACACACACAGCATATACTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAGCATATACTTAA  999

seq1  GTAGTATTTTTTTGCCTGGTTCATTC-GGTTAACTATTAGTCTGTGACCT  1049
      |||||| |||||||||||| |||||| |||||||||||||||||||||||
seq2  GTAGTA-TTTTTTGCCTGG-TCATTCGGGTTAACTATTAGTCTGTGACCT  1047

seq1  ACCCATTTTTACAACAGATTG-ACCATCCACCCACCCACCCATGCATTCA  1098
      ||||| ||||||||||||||| |||||||||||||||||||||||| |||
seq2  ACCCAATTTTACAACAGATTGAACCATCCACCCACCCACCCATGCA-TCA  1096

seq1  TCCATATTTTGTGTGTGTGTGTACTAGGGATGGTATTTAGGGCACTCT-A  1147
      ||   || ||||||||||| | |||| |||| |||||   |||||||| |
seq2  TC---ATATTGTGTGTGTG-GGACTA-GGATTGTATT--AGGCACTCTAA  1139

seq1  CCATTGAACTACATTGCCAACTTTTATTTATAATC  1182
      |||||||||| ||||| |||||      |||||||
seq2  CCATTGAACTTCATTG-CAACT----ACTATAATC  1169