BAC Information

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BAC

Clone NameB6Ng01-003N23
Chromosome9 (Build37)
Map Location 11,193,250 - 11,307,358
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665154, LOC100039970, LOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N23.bB6Ng01-003N23.g
ACCDH841450DH841451
length1,1721,115
definitionDH841450|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N23, 5' end.DH841451|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,193,250 - 11,194,434)(11,306,230 - 11,307,358)
sequence
gaattcaagtatgttaggaacctggaagcaagaactgaatgagaagccct
gcagacttgttcaccctgacttcctcagcctacttttctatagaatgtca
gaccaacagcagaggggttgggactcctcaattggccatccattcaaatg
tcctacagtgaagaatcccattcttgtggcagcaatctatcataccataa
aataacatgattgaaaataaaactcaaaattaaggagacatctccagaaa
atcaaatttcattctctttgagttgaaatggaaatgcaagattttaaact
aattgtctcaaagacagaacaaaaaaggtatgtctggaagtggatggatt
ttaagagttggcaaaaagggtaaatatggtcatatcacatactaacttct
caaagaactcataaaaaagaaaaaatccatgtttttgttttctttctaat
tttaatacatacattaaaaagtttcccctcgtgacattttaaattttggg
ttaattttattttgaaaattacatctaccattaacatgtgtacagtcaca
caagtttcatgtcactaaatgtttagcaggaataatgataagaaaatccc
ttttagacacatttttagtttctacaaatacaagtaataagctattattt
ctctcattagtggaaataaccctcaacttaaaaaccacttcttttcatgc
agatgtgtaaccacataccaagtataattctattcaaagccacactccat
tgtcatatttactgctctattagagagttctctctaaagggtagcacttc
caagcaaggacagctgctgagctcagttttctgttatttaaaaatactaa
ccagttattgggcttttagcaccacagttgagcctgtcatctatgacaga
cataaataaatgcatgtttatttggtacatattcgcaaaatattgtccaa
tagatccttgggagtttgcccaaaaattaaaaaaaataaaatagattcat
atacatatttactatgtactgagctcttagcttgcactacagatttaaga
aatctcattaaatagtcttcatgaaatttcttatggttctatggtgttca
tttcaatcagtagggtgtcaaatagaaatgttgttatgcacttcgatgac
ttagttcattccaaaatctgga
gaattcaacagtatctttggatgtacttgtctcataatgttgagtcagct
cctccatttattaatttatttttattacttaacctcataggtccttggtg
tatatattatggcttctgattttgtatttttatgggattgttctctgtgt
gaacatgcatgtaatgctttttcttgggttctttttctatttcatcatat
ttcaatttgtttgttttgctctaccttatttcactttattatttttttta
gatgcccatttgttttctaaggtgagacaaaatggttatggatatggatg
acaggagagatcaagagaaactatgaggaataggaagggcagaaattata
atcaaaatatattttaaaaaatataatctcaataaaagataaaattgaaa
caggatcaattaccaagtactataactattacctaaatattgaaaacaag
cagttatcaaaatacagacccaactcaacaaggatctctactgaggaatt
caaaattcaataaccttgggcacttctttaacaatgatggttgattggaa
aataaaacttttgaagcacttcaagaatgttgaaaaaattcacttcctaa
ctgtgtaagaataagtatctctctagcccagatgtgttgccacttattcc
aaaacagggcggtttgtacttaaaagtcaatggggctctttactccattt
caaagtcccttgcagagatttgcttgaatcattctactggactaactaac
tataaagccaagtgtcagccacaaatcacttgagcattgtcgcccatgat
ttagtacaatgaccatacaaaagtgagagccactagagtcttcccagaaa
acatactcaactttgtgtgtcagtggaacccaatttaaaacaactgaatt
gcctactaatttatatagcgtgtttcccacataaaccaaacctctaatta
tatgtgtaggtaaaatgtaaacatgatgtgaagctctgagtcaagatgtg
aaagaagagatcactcactttcttaattctcatatacataaaagctatgt
gtattgcaatgtttctgtcttcagctctgctctcattgtggcagatggtt
taaacacatgaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11193250_11194434
seq2: B6Ng01-003N23.b_48_1219

seq1  GAATTCAAGTATGTTAGGAACCTGGAAGCAAGAACTGAATGAGAAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATGTTAGGAACCTGGAAGCAAGAACTGAATGAGAAGCCCT  50

seq1  GCAGACTTGTTCACCCTGACTTCCTCAGCCTACTTTTCTATAGAATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTGTTCACCCTGACTTCCTCAGCCTACTTTTCTATAGAATGTCA  100

seq1  GACCAACAGCAGAGGGGTTGGGACTCCTCAATTGGCCATCCATTCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACAGCAGAGGGGTTGGGACTCCTCAATTGGCCATCCATTCAAATG  150

seq1  TCCTACAGTGAAGAATCCCATTCTTGTGGCAGCAATCTATCATACCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGTGAAGAATCCCATTCTTGTGGCAGCAATCTATCATACCATAA  200

seq1  AATAACATGATTGAAAATAAAACTCAAAATTAAGGAGACATCTCCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGATTGAAAATAAAACTCAAAATTAAGGAGACATCTCCAGAAA  250

seq1  ATCAAATTTCATTCTCTTTGAGTTGAAATGGAAATGCAAGATTTTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTCATTCTCTTTGAGTTGAAATGGAAATGCAAGATTTTAAACT  300

seq1  AATTGTCTCAAAGACAGAACAAAAAAGGTATGTCTGGAAGTGGATGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCAAAGACAGAACAAAAAAGGTATGTCTGGAAGTGGATGGATT  350

seq1  TTAAGAGTTGGCAAAAAGGGTAAATATGGTCATATCACATACTAACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTGGCAAAAAGGGTAAATATGGTCATATCACATACTAACTTCT  400

seq1  CAAAGAACTCATAAAAAAGAAAAAATCCATGTTTTTGTTTTCTTTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTCATAAAAAAGAAAAAATCCATGTTTTTGTTTTCTTTCTAAT  450

seq1  TTTAATACATACATTAAAAAGTTTCCCCTCGTGACATTTTAAATTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACATACATTAAAAAGTTTCCCCTCGTGACATTTTAAATTTTGGG  500

seq1  TTAATTTTATTTTGAAAATTACATCTACCATTAACATGTGTACAGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATTTTGAAAATTACATCTACCATTAACATGTGTACAGTCACA  550

seq1  CAAGTTTCATGTCACTAAATGTTTAGCAGGAATAATGATAAGAAAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCATGTCACTAAATGTTTAGCAGGAATAATGATAAGAAAATCCC  600

seq1  TTTTAGACACATTTTTAGTTTCTACAAATACAAGTAATAAGCTATTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACACATTTTTAGTTTCTACAAATACAAGTAATAAGCTATTATTT  650

seq1  CTCTCATTAGTGGAAATAACCCTCAACTTAAAAACCACTTCTTTTCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTAGTGGAAATAACCCTCAACTTAAAAACCACTTCTTTTCATGC  700

seq1  AGATGTGTAACCACATACCAAGTATAATTCTATTCAAAGCCACACTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTAACCACATACCAAGTATAATTCTATTCAAAGCCACACTCCAT  750

seq1  TGTCATATTTACTGCTCTATTAGAGAGTTCTCTCT-AAGGGTAGCACTTC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTCATATTTACTGCTCTATTAGAGAGTTCTCTCTAAAGGGTAGCACTTC  800

seq1  CAAGCAAGGACAGCTGCTGAGCTCAGTTTTCTGTTATTTAAAAATACTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGGACAGCTGCTGAGCTCAGTTTTCTGTTATTTAAAAATACTAA  850

seq1  CCAGTTATTGGGCTTTTAGCACCACAGTTGAGCCTGTCATCTATGACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATTGGGCTTTTAGCACCACAGTTGAGCCTGTCATCTATGACAGA  900

seq1  CATAAATAAATGCATGTTTATTTGGTACATATTCGCAAAATATTTGTCCA  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATAAATAAATGCATGTTTATTTGGTACATATTCGCAAAATA-TTGTCCA  949

seq1  ATAGATCCTTGGGAGTTTGCCCAAAAATTAAAAAAAAATAAAATAGATTC  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  ATAGATCCTTGGGAGTTTGCCCAAAAATT-AAAAAAAATAAAATAGATT-  997

seq1  CATATACATATTTACTATGTACTTGAGCTCTTAGCTTGCACTACAGATTT  1049
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATATACATATTTACTATGTAC-TGAGCTCTTAGCTTGCACTACAGATTT  1046

seq1  TAAAGAAATTCTCATTTAAATAGTCTTCAATGAAATATC-TATGGTTCTA  1098
        |||||| ||||| ||||||||||||| ||||||| || ||||||||||
seq2  --AAGAAA-TCTCA-TTAAATAGTCTTC-ATGAAATTTCTTATGGTTCTA  1091

seq1  TGTTTGTTTCATTTTCCATCAGTAGGGTGTTAAATAG-AATG-TGTATTG  1146
      || |   |||| |||| ||||||||||||| |||||| |||| |||  ||
seq2  TGGT--GTTCA-TTTCAATCAGTAGGGTGTCAAATAGAAATGTTGTTATG  1138

seq1  CACTTCCGGATGACCTAGGTTCAATTTCCAAAATCTGGA  1185
      ||||||  |||||| || |||||  ||||||||||||||
seq2  CACTTC--GATGACTTA-GTTCA--TTCCAAAATCTGGA  1172

seq1: chr9_11306230_11307358
seq2: B6Ng01-003N23.g_67_1181 (reverse)

seq1  AGGGTCATGTGTTTAAACAATCCTGCCACAATGAGAGCAGAGCTG-AGAC  49
      |||||||||||||||||| || ||||||||||||||||||||||| ||||
seq2  AGGGTCATGTGTTTAAACCAT-CTGCCACAATGAGAGCAGAGCTGAAGAC  49

seq1  AGAAAACATTGCAATACACATAGTTTTTATGTATATGGAGAAATAAAGAA  99
      || |||||||||||||||||||| |||||||||||| ||||| |||   |
seq2  AG-AAACATTGCAATACACATAGCTTTTATGTATAT-GAGAATTAA--GA  95

seq1  AAGTGAGTGATCTCTTCTATCACCATTCTTTGACCTCAGAGCTTCCAACA  149
      |||||||||||||||||| ||| |||   |||| |||||||||||  |||
seq2  AAGTGAGTGATCTCTTCTTTCA-CAT--CTTGA-CTCAGAGCTTC--ACA  139

seq1  TCATGTTTAACATTTTACCTAACAACATATAAATTAGAGGTTTGGTTTAT  199
      |||||||| ||||||||||||   |||||| |||||||||||||||||||
seq2  TCATGTTT-ACATTTTACCTA--CACATAT-AATTAGAGGTTTGGTTTAT  185

seq1  GTGGGAAACACGCTATATAAATTAGTAGGCAATTCAGTTGTTTTAAATT-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGGAAACACGCTATATAAATTAGTAGGCAATTCAGTTGTTTTAAATTG  235

seq1  GGTTCCACCTGACACACAAAGTTGAGTATGTTTTCTGGGAAGACTCTAGT  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCA-CTGACACACAAAGTTGAGTATGTTTTCTGGGAAGACTCTAGT  284

seq1  GGCTCTCACTTTTGTATGGTCATTGTACTAAATCATGGGCGACAATGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCACTTTTGTATGGTCATTGTACTAAATCATGGGCGACAATGCTC  334

seq1  AAGTGATTTGTGGCTGACACTTGGCTTTATAGTTAGTTAGTCCAGTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTGTGGCTGACACTTGGCTTTATAGTTAGTTAGTCCAGTAGAA  384

seq1  TGATTCAAGCAAATCTCTGCAAGGGACTTTGAAATGGAGTAAAGAGCCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAGCAAATCTCTGCAAGGGACTTTGAAATGGAGTAAAGAGCCCC  434

seq1  ATTGACTTTTAAGTACAAACCGCCCTGTTTTGGAATAAGTGGCAACACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTTAAGTACAAACCGCCCTGTTTTGGAATAAGTGGCAACACAT  484

seq1  CTGGGCTAGAGAGATACTTATTCTTACACAGTTAGGAAGTGAATTTTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAGAGAGATACTTATTCTTACACAGTTAGGAAGTGAATTTTTTC  534

seq1  AACATTCTTGAAGTGCTTCAAAAGTTTTATTTTCCAATCAACCATCATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTGAAGTGCTTCAAAAGTTTTATTTTCCAATCAACCATCATTG  584

seq1  TTAAAGAAGTGCCCAAGGTTATTGAATTTTGAATTCCTCAGTAGAGATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGTGCCCAAGGTTATTGAATTTTGAATTCCTCAGTAGAGATCC  634

seq1  TTGTTGAGTTGGGTCTGTATTTTGATAACTGCTTGTTTTCAATATTTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTTGGGTCTGTATTTTGATAACTGCTTGTTTTCAATATTTAGG  684

seq1  TAATAGTTATAGTACTTGGTAATTGATCCTGTTTCAATTTTATCTTTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTATAGTACTTGGTAATTGATCCTGTTTCAATTTTATCTTTTAT  734

seq1  TGAGATTATATTTTTTAAAATATATTTTGATTATAATTTCTGCCCTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATATTTTTTAAAATATATTTTGATTATAATTTCTGCCCTTCCT  784

seq1  ATTCCTCATAGTTTCTCTTGATCTCTCCTGTCATCCATATCCATAACCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCATAGTTTCTCTTGATCTCTCCTGTCATCCATATCCATAACCAT  834

seq1  TTTGTCTCACCTTAGAAAACAAATGGGCATCTAAAAAAAATAATAAAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCACCTTAGAAAACAAATGGGCATCTAAAAAAAATAATAAAGTG  884

seq1  AAATAAGGTAGAGCAAAACAAACAAATTGAAATATGATGAAATAGAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGTAGAGCAAAACAAACAAATTGAAATATGATGAAATAGAAAAA  934

seq1  GAACCCAAGAAAAAGCATTACATGCATGTTCACACAGAGAACAATCCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAGAAAAAGCATTACATGCATGTTCACACAGAGAACAATCCCAT  984

seq1  AAAAATACAAAATCAGAAGCCATAATATATACACCAAGGACCTATGAGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAAAATCAGAAGCCATAATATATACACCAAGGACCTATGAGGT  1034

seq1  TAAGTAATAAAAATAAATTAATAAATGGAGGAGCTGACTCAACATTATGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATAAAAATAAATTAATAAATGGAGGAGCTGACTCAACATTATGA  1084

seq1  GACAAGTACATCCAAAGATACTGTTGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  GACAAGTACATCCAAAGATACTGTTGAATTC  1115