BAC Information

Click to search

BAC

Clone NameB6Ng01-004H09
Chromosome9 (Build37)
Map Location 116,958,336 - 117,099,910
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H09.bB6Ng01-004H09.g
ACCDH841864DH841865
length1,1721,130
definitionDH841864|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H09, 5' end.DH841865|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,098,724 - 117,099,910)(116,958,336 - 116,959,469)
sequence
gaattctcttgtttgatcaaaactgctcttcctataataagcacagattc
tgtttggtgcagtcagctttaagagcccaaacaatgagaactgttcaggt
ttagatgcacagcccagtgtcacactgctgttcgttctctgaatgcctag
aatcccagatgcagagcagtaggttgcatgcagtgaggtgcatctcctta
ggttgcagcacaaaacaccatcttgaggctgtagtctagaaaagagtgaa
ttagttgggaaataagcccattgctgtcccaattcccaggattgaacttg
ggtcttctacctttgcatctccattttaaatatgtttttaataggttcaa
cagtacctagcagcagactctgcacccaagaccaaggaaagctcataata
gaaaggtctggacccaatctacattctgcatgtctgggtctctctctccc
tctctctcttttcttttctcctaaaagccacaacgattttgtctttgatt
tgcattcatttttatgtgccaactacaaactatcagtcccagcatcttag
acactataaatgaggcttagcatgtattttatacttcatcagtgaattat
ataatagcaagtgaggtgtctcatactttccagattgacgtcagttgagg
caccagaaaagagtaaactggcttgccttcagttctataatcatggccct
tgtcgactatagaccagaatctctcctgcaaaagtttagcatagtgagct
ttcaaagtgtggccccttaaatagcagctgcaacaccttccaggaagttg
gaattaatgtatatcttcagatacctttcccagactgactgagtcagaag
atgtgcacgggacttagcgatctgtgccttttaaacctttctgagggctg
agactccattagtaaagtgtctagacagcatgagggcctgagtttgactc
cttagaagccataaggaaagggaaacaaacccaactggggcgtggtggcc
tgcattcataatgttagagcaataggcaacaccggcagatcccggagctg
ctcaccagacgtctggcttatctaggagctctggatggcagggagaccct
ggtgtcaatttactgtggactgctccttggaatgttcaccaggtatcttc
gggcagtctgcatggtattcat
gaattcaagtagcccctaaaattgccctgtgggctgaagagtccaggagt
aagaagtctcacatggaattggaggtgaatacacagtagacaaagaatac
aaactcagtacgaaggtatatacatacagccatataggcccatacacata
tacaggataattgttaaacatcaaaaataatgggccaataagtcacatta
tgattacgactgaaaatatcactctaccagcctgattttaagctacttaa
tatgtcattgtaactattaaaatttggctaataaatcatattatctcttc
atgtagaaaagaactgggaggtaggaaacagtattaaatgctgtcatata
aaaatccatgattaaaacagcaatgcttcttgtgagacgtaatgtttgca
gttactttttattacttttgcctaatatctatatagcagtcagtaaacaa
ggtagcaagcttgtgactccccaagccacaagaaagaacctatctcattg
cttattctagaaagttttcaagttaacactgaatcaacaatagcgacaag
cattttcgtgtcctggcactgggaacagatgctcatcatggatgaccctg
ggcagaggagcagcctttggctgtctggttgaggaacactatcaaggcat
catagccagctttggaatttcatagaggtgtgtccatcccatgggccacg
ggttgcatgccccctgaatatctatgaatatgacccagcacaaaattata
aacctgtaaacatacttaaaatagtgtaagttttttgcacattgttttag
tttgtttgttcttggtccatcatttgtgtgatgtgtgatgtgtgatgtgt
gagtgtgaacttttggagatgaccacaaggtcttcaagatttccaagggt
tgggcatgttctgtataaataaaaggcacaggaacagcaggattggcctt
gacagaagttattggagtcttccacaatgacttacctttctggaaataag
acttgggagatgatattagtaccaactcaagcacatgcaccctggtgtgc
acgagtcaccttgccatgatccccatgcaccttgcaccatgccacattgt
acctgcacgtgcacatgcatcacgtgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117098724_117099910
seq2: B6Ng01-004H09.b_47_1218 (reverse)

seq1  ATGAATACCATTGCATGTACTGGCCAGAAGATAACTTTGGTTGACATTCT  50
      |||||||||| ||||   ||| ||| ||||||| |  ||||  |||||| 
seq2  ATGAATACCA-TGCA--GACT-GCCCGAAGATACC--TGGTGAACATTC-  43

seq1  CCAGGAGCAGTCCACAGTAGATTTTTGACA-CAGGGTCT-CCTGCCATTC  98
      | ||||||||||||||||| |   |||||| |||||||| ||||||| ||
seq2  CAAGGAGCAGTCCACAGTAAA---TTGACACCAGGGTCTCCCTGCCA-TC  89

seq1  CAGAGCTCCTAGGATAAGCCAGGACGTCTGGTGAGCAGCTCCGGGGATCT  148
      ||||||||||| ||||||||| |||||||||||||||||||| |||||||
seq2  CAGAGCTCCTA-GATAAGCCA-GACGTCTGGTGAGCAGCTCC-GGGATCT  136

seq1  GCCGGTGTTTGCCTATTTGGCTCTAACATTATGAATGCAGGCCACCACGC  198
      ||||||| |||||||||  |||||||||||||||||||||||||||||||
seq2  GCCGGTG-TTGCCTATT--GCTCTAACATTATGAATGCAGGCCACCACGC  183

seq1  CCAGTTTGGGTTTTGTTTTCCTTTTCCTTATGGCTTCTAAGGAGTCAAAC  248
      ||   ||||||||   ||||| ||||||||||||||||||||||||||||
seq2  CCCAGTTGGGTTT--GTTTCCCTTTCCTTATGGCTTCTAAGGAGTCAAAC  231

seq1  TCAGGCCCTCATGCTGTCTAGACACTTTACTAATGGAGTCTCAGCCCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCCTCATGCTGTCTAGACACTTTACTAATGGAGTCTCAGCCCTCA  281

seq1  GAAAGGTTT-AAAGGCACAGATCGCTAAGTCCCGTGCACATCTTCTGACT  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTTAAAAGGCACAGATCGCTAAGTCCCGTGCACATCTTCTGACT  331

seq1  CAGTCAGTCTGGG-AAGGTATCTGAAGATATACATTAATTCCAACTTCCT  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTCTGGGAAAGGTATCTGAAGATATACATTAATTCCAACTTCCT  381

seq1  GGAAGGTGTTGCAGCTGCTATTTAAGGGGCCACACTTTGAAAGCTCACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGTTGCAGCTGCTATTTAAGGGGCCACACTTTGAAAGCTCACTA  431

seq1  TGCTAAACTTTTGCAGGAGAGATTCTGGTCTATAGTCGACAAGGGCCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACTTTTGCAGGAGAGATTCTGGTCTATAGTCGACAAGGGCCATG  481

seq1  ATTATAGAACTGAAGGCAAGCCAGTTTACTCTTTTCTGGTGCCTCAACTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAACTGAAGGCAAGCCAGTTTACTCTTTTCTGGTGCCTCAACTG  531

seq1  ACGTCAATCTGGAAAGTATGAGACACCTCACTTGCTATTATATAATTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAATCTGGAAAGTATGAGACACCTCACTTGCTATTATATAATTCAC  581

seq1  TGATGAAGTATAAAATACATGCTAAGCCTCATTTATAGTGTCTAAGATGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGTATAAAATACATGCTAAGCCTCATTTATAGTGTCTAAGATGC  631

seq1  TGGGACTGATAGTTTGTAGTTGGCACATAAAAATGAATGCAAATCAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGATAGTTTGTAGTTGGCACATAAAAATGAATGCAAATCAAAGA  681

seq1  CAAAATCGTTGTGGCTTTTAGGAGAAAAGAAAAGAGAGAGAGGGAGAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCGTTGTGGCTTTTAGGAGAAAAGAAAAGAGAGAGAGGGAGAGAG  731

seq1  AGACCCAGACATGCAGAATGTAGATTGGGTCCAGACCTTTCTATTATGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGACATGCAGAATGTAGATTGGGTCCAGACCTTTCTATTATGAG  781

seq1  CTTTCCTTGGTCTTGGGTGCAGAGTCTGCTGCTAGGTACTGTTGAACCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGGTCTTGGGTGCAGAGTCTGCTGCTAGGTACTGTTGAACCTA  831

seq1  TTAAAAACATATTTAAAATGGAGATGCAAAGGTAGAAGACCCAAGTTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACATATTTAAAATGGAGATGCAAAGGTAGAAGACCCAAGTTCAA  881

seq1  TCCTGGGAATTGGGACAGCAATGGGCTTATTTCCCAACTAATTCACTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAATTGGGACAGCAATGGGCTTATTTCCCAACTAATTCACTCTT  931

seq1  TTCTAGACTACAGCCTCAAGATGGTGTTTTGTGCTGCAACCTAAGGAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTACAGCCTCAAGATGGTGTTTTGTGCTGCAACCTAAGGAGAT  981

seq1  GCACCTCACTGCATGCAACCTACTGCTCTGCATCTGGGATTCTAGGCATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCACTGCATGCAACCTACTGCTCTGCATCTGGGATTCTAGGCATT  1031

seq1  CAGAGAACGAACAGCAGTGTGACACTGGGCTGTGCATCTAAACCTGAACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACGAACAGCAGTGTGACACTGGGCTGTGCATCTAAACCTGAACA  1081

seq1  GTTCTCATTGTTTGGGCTCTTAAAGCTGACTGCACCAAACAGAATCTGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTGTTTGGGCTCTTAAAGCTGACTGCACCAAACAGAATCTGTG  1131

seq1  CTTATTATAGGAAGAGCAGTTTTGATCAAACAAGAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATAGGAAGAGCAGTTTTGATCAAACAAGAGAATTC  1172

seq1: chr9_116958336_116959469
seq2: B6Ng01-004H09.g_69_1198

seq1  GAATTCAAGTAGCCCCTAAAATTGCCCTGTGGGCTGAAGAGTCCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGCCCCTAAAATTGCCCTGTGGGCTGAAGAGTCCAGGAGT  50

seq1  AAGAAGTCTCACATGGAATTGGAGGTGAATACACAGTAGACAAAGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTCACATGGAATTGGAGGTGAATACACAGTAGACAAAGAATAC  100

seq1  AAACTCAGTACGAAGGTATATACATACAGCCATATAGGCCCATACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGTACGAAGGTATATACATACAGCCATATAGGCCCATACACATA  150

seq1  TACAGGATAATTGTTAAACATCAAAAATAATGGGCCAATAAGTCACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATAATTGTTAAACATCAAAAATAATGGGCCAATAAGTCACATTA  200

seq1  TGATTACGACTGAAAATATCACTCTACCAGCCTGATTTTAAGCTACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACGACTGAAAATATCACTCTACCAGCCTGATTTTAAGCTACTTAA  250

seq1  TATGTCATTGTAACTATTAAAATTTGGCTAATAAATCATATTATCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATTGTAACTATTAAAATTTGGCTAATAAATCATATTATCTCTTC  300

seq1  ATGTAGAAAAGAACTGGGAGGTAGGAAACAGTATTAAATGCTGTCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAAGAACTGGGAGGTAGGAAACAGTATTAAATGCTGTCATATA  350

seq1  AAAATCCATGATTAAAACAGCAATGCTTCTTGTGAGACGTAATGTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATGATTAAAACAGCAATGCTTCTTGTGAGACGTAATGTTTGCA  400

seq1  GTTACTTTTTATTACTTTTGCCTAATATCTATATAGCAGTCAGTAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTTTATTACTTTTGCCTAATATCTATATAGCAGTCAGTAAACAA  450

seq1  GGTAGCAAGCTTGTGACTCCCCAAGCCACAAGAAAGAACCTATCTCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAAGCTTGTGACTCCCCAAGCCACAAGAAAGAACCTATCTCATTG  500

seq1  CTTATTCTAGAAAGTTTTCAAGTTAACACTGAATCAACAATAGCGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTAGAAAGTTTTCAAGTTAACACTGAATCAACAATAGCGACAAG  550

seq1  CATTTTCGTGTCCTGGCACTGGGAACAGATGCTCATCATGGATGACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCGTGTCCTGGCACTGGGAACAGATGCTCATCATGGATGACCCTG  600

seq1  GGCAGAGGAGCAGCCTTTGGCTGTCTGGTTGAGGAACACTATCAAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAGCAGCCTTTGGCTGTCTGGTTGAGGAACACTATCAAGGCAT  650

seq1  CATAGCCAGCTTTGGAATTTCATAGAGGTGTGTCCATCCCATGGGCCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAGCTTTGGAATTTCATAGAGGTGTGTCCATCCCATGGGCCACG  700

seq1  GGTTGCATGCCCCCTGAATATCTATGAATATGACCCAGCACAAAATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATGCCCCCTGAATATCTATGAATATGACCCAGCACAAAATTATA  750

seq1  AACCTGTAAACATACTTAAAATAGTGTAAGTTTTTTGCACATTGTTTTTA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACCTGTAAACATACTTAAAATAGTGTAAGTTTTTTGCACATTG-TTTTA  799

seq1  GTTTGTTTGTTCTTGGTCCATCATTTGTGTGATGTGTGATGTGTGATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTCTTGGTCCATCATTTGTGTGATGTGTGATGTGTGATGTG  849

seq1  TGAGTGTGAAC-TTTGGAGATGACAACAAGGTC-TCAAGATTTCCAAGGG  898
      ||||||||||| |||||||||||| |||||||| ||||||||||||||||
seq2  TGAGTGTGAACTTTTGGAGATGACCACAAGGTCTTCAAGATTTCCAAGGG  899

seq1  TTGGGCATG-TCTGTATAAATAAAAGGCACA-GAACAGCAGGA-TGGCC-  944
      ||||||||| ||||||||||||||||||||| ||||||||||| ||||| 
seq2  TTGGGCATGTTCTGTATAAATAAAAGGCACAGGAACAGCAGGATTGGCCT  949

seq1  TGACAGAAGTTACTGGAGTC-TCCAC-ATGAACTAACCTTCTGGAAATAA  992
      |||||||||||| ||||||| ||||| ||||  || | ||||||||||||
seq2  TGACAGAAGTTATTGGAGTCTTCCACAATGACTTACCTTTCTGGAAATAA  999

seq1  GAC-TGGGAGATGATATTAGTACCCACTCAAGCACATGCACACGTGTGTG  1041
      ||| |||||||||||||||||||| |||||||||||||||| |  |||||
seq2  GACTTGGGAGATGATATTAGTACCAACTCAAGCACATGCACCCTGGTGTG  1049

seq1  CACGAGTGCACACATGCACATGAACACACATGCACACATGCACACATGCA  1091
      ||||||| ||| | ||| ||||| | | ||||||| | ||||| ||||| 
seq2  CACGAGT-CAC-CTTGC-CATGATC-CCCATGCAC-CTTGCAC-CATGC-  1092

seq1  CACA-TGTACACTGCACACGTGCACACATGCATACACGTGCACA  1134
      |||| ||||| |||  ||||||  ||||||||| ||||||||||
seq2  CACATTGTAC-CTG--CACGTG--CACATGCAT-CACGTGCACA  1130