BAC Information

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BAC

Clone NameB6Ng01-004I12
Chromosome9 (Build37)
Map Location 24,280,017 - 24,281,193
singlet/doubletsinglet
Overlap geneDpy19l1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004I12.bB6Ng01-004I12.g
ACCDH841912DH841913
length1,2041,155
definitionDH841912|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I12, 5' end.DH841913|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtacaatgttgaataggtagggagagagtggacagccttgtc
tagtccctgattttagtgggattgcttccagcttctcaccatttactttg
atgttggctactggtttgctgtagattgcttttatcatgtttaggtgtgg
gccctgaattcctgatctttccaagacttttatcatgaatgggtgttgga
ttttgtcaaatgctttttctgcatctaacgagatgatcatgtggtttttg
tctttgagtttgtttatatactggattacgttgatggattcctgtatatt
gaaccatccctgcatccctgggatgaaacctacttggtcaggatggatga
tttttttgatgtgttcttggattcggttagcaagaactttattgaggatt
tttgcatcgatacccataagagaaatttgtctgaagttctctatttttgt
tgggtctttttgtggtttaggtatcagagtaattgtggcttcatagaatg
agttgggtagagtaccttctgtttctattttgtggaatagtttgtgaaga
actgggattagatcttctttgaaggtctgatagaactctgcactaaaccc
atctggtcctgggatttctttggttgggagactattaatgactgcttcta
tttctttaggggatataggactgtttagattattaacctgatcttgattt
aactttggtacctggtatctgtctagaaacttgtccatttcatccaggtt
ttccagttttgttgggtatagccttatgtagaaggatctgatgatgttat
ggatttcttcaggatctgttttatgtttcccttttcatttctgattttgt
taataggatgctttccctgtgtcctctcgtgagtctggctaagggttatc
tatcttgttgattttctcaaagaacagctcttgattggtgattcttttga
acagttcttcttgtttccatttggtgattcacccctggagtttgatattt
ctgctctactctcttggggtgaatttggcttcttttgttctaaagcttta
aggtatgtgtcaagctggtcaatgtgtggcctcctctttgtttctttttg
gaagaccttagacgcattgagttttcctctagaaagtgtccatgtgtccc
tacattggggacttgaggtggtgcgggaggctccattctagacctcaaaa
gtct
gaattccagaaaagtctggggttccccagagaagccctgtcttgaaaatt
tacaaagacaaaaaaaaaagcaaacaaaatgaaaagaaatgttatcatta
ctagatatattttagagtttttcataattgtcaaactctcttttcatgct
cctgctctttggctccttctctatctagttaaacgaagctcagcctctcc
cacagactcttctgtagtcaagtcttactggtgatgcataggtaagaaaa
aaatgaaataagaaatcttcaagatttacattttaaaaaacttaaaattg
tacaaaggaaacataaaagacctaaacaaaaatatatgtgtatctaattt
ttcaagatgtgaactcttttttttaatattttttattattacgtattttc
ctcaattacttttagaatgctatcccaaaagtcccccataccctcccccc
aacttccctacccacccattcccaagatgtaaactcttatctcaaattaa
tttgtaaagataaaacaatcccagccaaaatcccaatatttataattatt
ttagagaagtagaataaaaggggactatcctaatggatataaaggtctat
cactcaaagtagctaaaacagcaggacacaggcagatgatacccagactg
atcaacgccttacgtggaggcaggggacataaactgacctactttccaga
cagaggcactcccagcccagccactgcccaccctacacaacagctctggg
ctgacgaagtaatgtcctcaaggtcacgcaagggaaactgcagcctatga
tagactaatcaatagaagtgatatgtagttcaggggcctttgccaaagga
agcataactgtgctaagctatcccagcccagagaacccatgggattcaca
gggacttggcttttgaagatggcactccttcatacacttgctgcaagcaa
atctgcagcccagagtcacgttcaggctcatatggcatgctgagcatgaa
atcaaacacagtgacagtcgtgatagtacactgattttatacttaaagag
aagctacttcagtcagtggtgagaaaggtggtgagttacacaagacactt
caagaatattcttttctaaattgcatcaacccacgccatagtttaaaata
agcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24280017_24281193
seq2: B6Ng01-004I12.g_66_1220

seq1  GAATTCCAGAAAAGTCTGGGGTTCCCCAGAGAAGCCCTGTCTTGAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAGTCTGGGGTTCCCCAGAGAAGCCCTGTCTTGAAAATT  50

seq1  TACAAAGACAAAAAAAAAAGCAAACAAAATGAAAAGAAATGTTATCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACAAAAAAAAAAGCAAACAAAATGAAAAGAAATGTTATCATTA  100

seq1  CTAGATATATTTTAGAGTTTTTCATAATTGTCAAACTCTCTTTTCATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATATTTTAGAGTTTTTCATAATTGTCAAACTCTCTTTTCATGCT  150

seq1  CCTGCTCTTTGGCTCCTTCTCTATCTAGTTAAACGAAGCTCAGCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTTTGGCTCCTTCTCTATCTAGTTAAACGAAGCTCAGCCTCTCC  200

seq1  CACAGACTCTTCTGTAGTCAAGTCTTACTGGTGATGCATAGGTAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCTTCTGTAGTCAAGTCTTACTGGTGATGCATAGGTAAGAAAA  250

seq1  AAATGAAATAAGAAATCTTCAAGATTTACATTTTAAAAAACTTAAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATAAGAAATCTTCAAGATTTACATTTTAAAAAACTTAAAATTG  300

seq1  TACAAAGGAAACATAAAAGACCTAAACAAAAATATATGTGTATCTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGAAACATAAAAGACCTAAACAAAAATATATGTGTATCTAATTT  350

seq1  TTCAAGATGTGAACTCTTTTTTTTAATATTTTTTATTATTACGTATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATGTGAACTCTTTTTTTTAATATTTTTTATTATTACGTATTTTC  400

seq1  CTCAATTACTTTTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTACTTTTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCC  450

seq1  AACTTCCCTACCCACCCATTCCCAAGATGTAAACTCTTATCTCAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCTACCCACCCATTCCCAAGATGTAAACTCTTATCTCAAATTAA  500

seq1  TTTGTAAAGATAAAACAATCCCAGCCAAAATCCCAATATTTATAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAGATAAAACAATCCCAGCCAAAATCCCAATATTTATAATTATT  550

seq1  TTAGAGAAGTAGAATAAAAGGGGACTATCCTAATGGATATAAAGGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGTAGAATAAAAGGGGACTATCCTAATGGATATAAAGGTCTAT  600

seq1  CACTCAAAGTAGCTAAAACAGCAGGACACAGGCAGATGATACCCAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAAGTAGCTAAAACAGCAGGACACAGGCAGATGATACCCAGACTG  650

seq1  ATCAACGCCTTACGTGGAGGCAGGGGACATAAACTGACCTACTTTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGCCTTACGTGGAGGCAGGGGACATAAACTGACCTACTTTCCAGA  700

seq1  CAGAGGCACTCCCAGCCCAGCCACTGCCCACCCTACACAACAGCTCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCACTCCCAGCCCAGCCACTGCCCACCCTACACAACAGCTCTGGG  750

seq1  CTGACGAAGTAATGTCCTCAAGGTCACGCAAGGGAAACTGCAGCCTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGAAGTAATGTCCTCAAGGTCACGCAAGGGAAACTGCAGCCTATGA  800

seq1  TAGACTAATCAATAGAAGTGATATGTAGTTCAGGGGCCTTTGCCAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAATCAATAGAAGTGATATGTAGTTCAGGGGCCTTTGCCAAAGGA  850

seq1  AGCATAACTGTGCTAAGCTATCCCAGCCCAGAGAACCCATGGGATTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACTGTGCTAAGCTATCCCAGCCCAGAGAACCCATGGGATTCACA  900

seq1  GGGACTTGGCTTTTGAAGAAGGCACTCCTTCATACACTTGCTGCAAGCAA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGACTTGGCTTTTGAAGATGGCACTCCTTCATACACTTGCTGCAAGCAA  950

seq1  ATCTGCAGCCCAGAGTCCACGTTCAGGGCCTCAATATGGCAATGCTGAGC  1000
      |||||||||||||||| ||||||||||  ||| ||||||| |||||||||
seq2  ATCTGCAGCCCAGAGT-CACGTTCAGG--CTC-ATATGGC-ATGCTGAGC  995

seq1  ATGAAATCCAAACACAGGTGACAGTCGTTGATAAGTACACTGATTTTATA  1050
      ||||||| |||||||| |||||||||| |||| |||||||||||||||||
seq2  ATGAAAT-CAAACACA-GTGACAGTCG-TGAT-AGTACACTGATTTTATA  1041

seq1  CTTAAAAGAGAAAGCTACTTCAAGTCAGTGGTGAG-AAGGTGATGAGTTA  1099
      ||| |||||| |||||||||| ||||||||||||| |||||| |||||||
seq2  CTT-AAAGAG-AAGCTACTTC-AGTCAGTGGTGAGAAAGGTGGTGAGTTA  1088

seq1  CACAAAGACCACTACAAAGAATATTCTTTTCTACAAATGCATCAACACAA  1149
      ||| |||| |||| | ||||||||||||||||| || ||||||||| |  
seq2  CAC-AAGA-CACTTC-AAGAATATTCTTTTCTA-AATTGCATCAACCC--  1132

seq1  ACGCCAAATAAGTTAAAAATATAAGCTA  1177
      ||||||    |||| |||  ||||||||
seq2  ACGCCA---TAGTTTAAA--ATAAGCTA  1155