BAC Information

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BAC

Clone NameB6Ng01-004M07
Chromosome9 (Build37)
Map Location 4,534,738 - 4,535,854
singlet/doubletsinglet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M07.bB6Ng01-004M07.g
ACCDH842092DH842093
length1,2141,108
definitionDH842092|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M07, 5' end.DH842093|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagtttttaattgctgagtagtactcccttgtgtaaatatatc
acattttctgtacctattcctctgttgagggacacctgggttctttctcg
ctatttatagtagcttctggctattataaataagactgctattaacatag
tgaagcatgtgtccttattacaagttggaacatcttctgggtatatgccc
aggagaaatattgctggatcttctgttaatgctacgtctaattttctgag
gaaccgacagactgatttcgagagtggttgtaccagcttgcaatcccacc
aacaaaggaggagtgtccctctttacccacatcctcaccagcatctgctg
tcacctgaatttttgaacttagccattctgattggtttgaggtgaaattt
cagggttgttttgatttgcattactctaatgattaaggatattgaacatt
tttttaaaggtgcttcttagccattcagtattcctcagttgaaaattctt
tgtttatctgtgcaccacattttttaatagggttacttagttttctggag
tccaacttctagagttctttatatatattggatattagccccctatcaga
tttaggattgataaagagatcttttcccaatctgttggttgccttttagt
cttgttgacagtgtccttttccttacagaagctttgcaattttatgaggt
cacatttattgattcttgatcttacaggacaagccattggtattaaggaa
tctttccactgagcccatatcttcgaggcttttccctactttctcctcta
taagtttcagtgtctctacttttatgtggaggtctttgatccacttacac
ttgagctttgtacaaggagataagaaaggatcaatttgcattcttctaca
tgataacagccagttgagccagcaccattgttgaagatgctgtcttcttc
cactggattgttttagcaccttttgtcaaagatcaagtgaccatcagtag
atgggttcatttcttgaaatcaattctgttccatggaatctacctggtct
gtcattgtaccagtaccaatgcagattttgatgttggtgttgttgtgttt
gctttggtatgttttcacgagtggctctggtagactgctctaggtaagga
ttgggatctacatcaaagtcttaatgttggtgaaagaatttggctccata
aatttggttatcct
gaattcaagtgatataaagagagaaatgataaaaaatggggaaaatgagg
acagatggagggatggaagtcagccaagaagaggaggaaggaaagaagga
caaaatatactaagatttgaaaaagtcttaaggaattatttcatatttat
cttgttctttgtttatatatgtatatgtaaacacatacataaacacacaa
acatgcaaatgcacacatatctgttatctatctatctatcatatatatat
atctttatgaggctataccatttgggaaaaaaaatattttcctcatgaac
catagatcatctaattgaaaccctagtagcagccatgagttcaagagact
cccaaacaatatagactattgtaatctcctagctatttcaaaacatacaa
tacaatacaatacaatacaatacaatcaactctagtcacctttctgtgtg
atggaaatctagccgttattcctctggttgggagtgattttttgtacccc
ttatcaaatctgccctaatctcttccttttacttacaaagatctattcaa
tctctggtgactattctttaaataatgctttagtttagtctatgaaatgt
tttctattctttgtttaattaatgaatatggatttttgttgaaaggtgag
ccattgcatacactctcagaatcatttggattagttcctctgatagaata
gaatcaagaatgaaatccagagctgaagatgtagctcatttgacagagag
cctgcaaaacacatccatggaggttctgggtttcaacctgcagcaccata
aaacacagaatcaaaccaacaaatgttacacgcgacttttctttggagct
atggaataaagataagaaataatcatgtttctaatcagacacagcttgta
ggaggaaggaaccatgattatataaccaagaagtcattatcctcctacag
cacagtggggtttattatactttaatgaatgtcttcttgaataaaggatt
gctctttacaattctatgtaggtagtcctatagtatgaaattaggtaggt
ttacaaaaggataggtttcgtagtacctcaaatttaacttcttaagtgtt
aacgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4534738_4535854
seq2: B6Ng01-004M07.g_68_1175

seq1  GAATTCAAGTGATATAAAGAGAGAAATGATAAAAAATGGGGAAAATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGATATAAAGAGAGAAATGATAAAAAATGGGGAAAATGAGG  50

seq1  ACAGATGGAGGGATGGAAGTCAGCCAAGAAGAGGAGGAAGGAAAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGAGGGATGGAAGTCAGCCAAGAAGAGGAGGAAGGAAAGAAGGA  100

seq1  CAAAATATACTAAGATTTGAAAAAGTCTTAAGGAATTATTTCATATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATACTAAGATTTGAAAAAGTCTTAAGGAATTATTTCATATTTAT  150

seq1  CTTGTTCTTTGTTTATATATGTATATGTAAACACATACATAAACACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTTTGTTTATATATGTATATGTAAACACATACATAAACACACAA  200

seq1  ACATGCAAATGCACACATATCTGTTATCTATCTATCTATCATATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAATGCACACATATCTGTTATCTATCTATCTATCATATATATAT  250

seq1  ATCTTTATGAGGCTATACCATTTGGGAAAAAAAATATTTTCCTCATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATGAGGCTATACCATTTGGGAAAAAAAATATTTTCCTCATGAAC  300

seq1  CATAGATCATCTAATTGAAACCCTAGTAGCAGCCATGAGTTCAAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCATCTAATTGAAACCCTAGTAGCAGCCATGAGTTCAAGAGACT  350

seq1  CCCAAACAATATAGACTATTGTAATCTCCTAGCTATTTCAAAACATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAATATAGACTATTGTAATCTCCTAGCTATTTCAAAACATACAA  400

seq1  TACAATACAATACAATACAATACAATCAACTCTAGTCACCTTTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACAATACAATACAATACAATCAACTCTAGTCACCTTTCTGTGTG  450

seq1  ATGGAAATCTAGCCGTTATTCCTCTGGTTGGGAGTGATTTTTTGTACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCTAGCCGTTATTCCTCTGGTTGGGAGTGATTTTTTGTACCCC  500

seq1  TTATCAAATCTGCCCTAATCTCTTCCTTTTACTTACAAAGATCTATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATCTGCCCTAATCTCTTCCTTTTACTTACAAAGATCTATTCAA  550

seq1  TCTCTGGTGACTATTCTTTAAATAATGCTTTAGTTTAGTCTATGAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTGACTATTCTTTAAATAATGCTTTAGTTTAGTCTATGAAATGT  600

seq1  TTTCTATTCTTTGTTTAATTAATGAATATGGATTTTTGTTGAAAGGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCTTTGTTTAATTAATGAATATGGATTTTTGTTGAAAGGTGAG  650

seq1  CCATTGCATACACTCTCAGAATCATTTGGATTAGTTCCTCTGATAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCATACACTCTCAGAATCATTTGGATTAGTTCCTCTGATAGAATA  700

seq1  GAATCAAGAATGAAATCCAGAGCTGAAGATGTAGCTCA-TTGACAGAGAG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATCAAGAATGAAATCCAGAGCTGAAGATGTAGCTCATTTGACAGAGAG  750

seq1  CCTGCAAAACACATCCATGGAGGTTCTGGG-TTCAACCTGCAGCACCATA  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTGCAAAACACATCCATGGAGGTTCTGGGTTTCAACCTGCAGCACCATA  800

seq1  AAACACAGAATCAAACCAACAAATGTTACACGCGAC-TTTCTTTGGAGCT  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACACAGAATCAAACCAACAAATGTTACACGCGACTTTTCTTTGGAGCT  850

seq1  ATGGAATAAAGATAAGAAATAATCATGTTTCTAATCAGACACAGCTTGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAAGATAAGAAATAATCATGTTTCTAATCAGACACAGCTTGTA  900

seq1  GGAGGAAGGAACCATGATTATATAACCAAGAAGTCATTATCTCCTTACAG  947
      |||||||||||||||||||||||||||||||||||||||||  | |||||
seq2  GGAGGAAGGAACCATGATTATATAACCAAGAAGTCATTATCCTCCTACAG  950

seq1  CACAGTGGGGTTTATTATACTTTATGAAATGTCTTCTTGAATTAAAGGAT  997
      ||||||||||||||||||||||||   |||||||||||||| ||||||||
seq2  CACAGTGGGGTTTATTATACTTTAATGAATGTCTTCTTGAA-TAAAGGAT  999

seq1  TGCTCTTTACAATCCTATGTAGGTAGCCCTAATAGTAATGAAATTAGGTA  1047
      ||||||||||||| |||||||||||| ||| ||||| |||||||||||||
seq2  TGCTCTTTACAATTCTATGTAGGTAGTCCT-ATAGT-ATGAAATTAGGTA  1047

seq1  GAGTTTACCAAAAAGGAATAGGTATCGTAGACACTCAAAATTTTAACTTC  1097
      | ||||||  |||||| |||||| ||||||   ||||||  |||||||||
seq2  G-GTTTAC--AAAAGG-ATAGGTTTCGTAGTACCTCAAA--TTTAACTTC  1091

seq1  TTTAAAGTGTTAACAGAAAA  1117
      ||  |||||||||| |||||
seq2  TT--AAGTGTTAAC-GAAAA  1108