BAC Information

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BAC

Clone NameB6Ng01-005E17
Chromosome9 (Build37)13 (Build37)
Map Location 19,824,997 - 19,825,78768,673,288 - 68,674,100
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1
Downstream geneOlfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E17.bB6Ng01-005E17.g
ACCDH842468DH842469
length1,1381,151
definitionDH842468|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E17, 5' end.DH842469|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,824,997 - 19,825,787)(68,673,288 - 68,674,100)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccagcatcaaagtaaatggtgaaaagcttgaagcaatcccactaaa
atcagggactagacaaggctgtccactctctccctacctattcaacattg
tacttgaagtcctagccagagcaattcgacaacaaaagaagatcaagggg
atacaaattggaaaggaagaagtcacaatatcactttttgcagatgatct
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagcc
tgataaacagcttcagtgaagtaactggatataaaattaactctcaatag
ccacaaataatatataaggtaataataagagctgggctattctttgacct
ttatgaagttgtactgtctcctttaatgctttaaccataactttaatttc
acctaaagtatcagaatccacaattccagggtccacctcaaagtttttct
tataattcgaactatgttctatgataagatctacagtccctggaggcaaa
gtagccaatactgaagtggagatgagatgcacaccttcccaactagaaat
tttaatatctgttaaaactgccaggcctaaccccgcactcccctcgatag
ctctaggtatatggtggatagtaaatttcagagtaaagtccctgttttcc
ataccagaaacatgtatttcattcccttgggaacggtttccattcccgta
agtatttctgacataggcgccgaatttctctcctttcattgctgcgggtg
taagctttcccctgaaatacggctggtgaggcatctacacatgcttttaa
tataatcttgtagagaaccttgtcttacggattggtctgatcaggtcttg
gcacaagtattcatttcacgtttcccaagccaattttttttttattaata
tatcattccctccgagggaggaaacattttagaaactgcctcttcaatct
agcaacaaactctcataaggactcaatcatgctttgcctaatctgaaagg
actggtggacttagccaggcgtaggtaaactctgccagctggaatctggt
taattttcccacactggctttggaaattttaatggcgc
gaattcttaattcttaattagcgcccacagcagccttataataggatgtt
caaactttgaggtgaagaaggatgattttacattactgtttatttttgcc
aaaaaatagctgtggatacatttaataaaaataactagaatatgtaacta
atattttattaccaccaattataattgataccaatagattacagaagttt
cttctactttctgttaaagcctttttggttctcaccagttaattggaatc
tcacctgatagcacctaacaaaggcttaggttctcttgtggcgagtttaa
ggtgaggtcttagccaattaacatatcctgtaagcttttggaaataaaat
tttgaagtaaatttgtaccaatttaccagtataactgaaaccctaattat
taaaaagatattgcctctgaatcttatgaagcaacaactattccccagaa
ctttaaacttccctttagagacattagttaataaaatacttttcacttag
gaaacaatatatactgaaagatttaaaccttttgcttcttgtattgaagc
cgataataaaattttcttacatattgttaagctatgttagccatacctag
gggcaaaaacctttaatggtcaccagttcactagaagtaaactctttaca
aatggaaaaaacttaaacttttaaatctataataattttacatgaagtag
gcaagctattttgaaatgccttttataggttttatagcttgattgacctt
ttataaacttttgaatttaaattttatttagaacaacgtctggcgaggtc
tgtaataaggctctaagaagtgccacacaagccgagctgaagctgctccc
ctctgagctcagcctcaacccaaatgcaatctgaacactctgccagagtc
ttggctcaaaggttatctctattgttgaagtatctgtaaagacctgtttc
ttgtgtttgttcatgttgtttagaaagactccaaccttgagttcccaatt
taaactacttttctgttacaagcaaaagctgctgcccctttaaaagctcc
atttgcattcgggccccacagctttttagcgtactttggctcccagccca
atggcagctaacttaacagcaatggctgtgtaatttgtactggcttttta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19824997_19825787
seq2: B6Ng01-005E17.b_401_1184

seq1  AAATAATATATAAGGTAATAATAAGAGCTGGGCTATTCTTTGACCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATATAAGGTAATAATAAGAGCTGGGCTATTCTTTGACCTTTAT  50

seq1  GAAGTTGTACTGTCTCCTTTAATGCTTTAACCATAACTTTAATTTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTACTGTCTCCTTTAATGCTTTAACCATAACTTTAATTTCACCT  100

seq1  AAAGTATCAGAATCCACAATTCCAGGGTCCACCTCAAAGTTTTTCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCAGAATCCACAATTCCAGGGTCCACCTCAAAGTTTTTCTTATA  150

seq1  ATTCGAACTATGTTCTATGATAAGATCTACAGTCCCTGGAGGCAAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAACTATGTTCTATGATAAGATCTACAGTCCCTGGAGGCAAAGTAG  200

seq1  CCAATACTGAAGTGGAGATGAGATGCACACCTTCCCAACTAGAAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTGAAGTGGAGATGAGATGCACACCTTCCCAACTAGAAATTTTA  250

seq1  ATATCTGTTAAAACTGCCAGGCCTAACCCCGCACTCCCCTCGATAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTTAAAACTGCCAGGCCTAACCCCGCACTCCCCTCGATAGCTCT  300

seq1  AGGTATATGGTGGATAGTAAATTTCAGAGTAAAGTCCCTGTTTTCCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATGGTGGATAGTAAATTTCAGAGTAAAGTCCCTGTTTTCCATAC  350

seq1  CAGAAACATGTAATTTCATTCCCTTGGGAACGGTTTCCATTCCCGTAAGT  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATGT-ATTTCATTCCCTTGGGAACGGTTTCCATTCCCGTAAGT  399

seq1  ATTTCTGACATAGGCGCCGAATTTCTCTCCTTTCATTGCTGC-GGTGTAA  449
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTCTGACATAGGCGCCGAATTTCTCTCCTTTCATTGCTGCGGGTGTAA  449

seq1  GCTTTCCCCTGAATTACGGCTGGTGAGGCATCTACACATGC-TTTAATAT  498
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  GCTTTCCCCTGAAATACGGCTGGTGAGGCATCTACACATGCTTTTAATAT  499

seq1  AATCTTGTAGAGAACC-TGTCTTACGGATTGGTCTGATCAGGTCTTGGCA  547
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATCTTGTAGAGAACCTTGTCTTACGGATTGGTCTGATCAGGTCTTGGCA  549

seq1  CAAGGTATTCA-TTCACGTTTTCCCAAGCCAATTTTTTTTTTATTAATAT  596
      ||| ||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CAA-GTATTCATTTCACG-TTTCCCAAGCCAATTTTTTTTTTATTAATAT  597

seq1  ATCATTCCCTTCCGAGGGAGGAAACATTTTAGAAACTGCCTCTTCCAATC  646
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  ATCATTCCC-TCCGAGGGAGGAAACATTTTAGAAACTGCCTCTT-CAATC  645

seq1  TAGCCACAAAACTCTCATAA-GACTC-ATCATGCTTTTGCCTAATTTCTG  694
      |||| || |||||||||||| ||||| ||||||| |||||||||  ||||
seq2  TAGCAAC-AAACTCTCATAAGGACTCAATCATGC-TTTGCCTAA--TCTG  691

seq1  AAAGGACT-GTGGACTTAGCCCCAGGCGGAGGTAAACTCTGCCAGCTGGA  743
      |||||||| ||||||||||  ||||||| |||||||||||||||||||||
seq2  AAAGGACTGGTGGACTTAG--CCAGGCGTAGGTAAACTCTGCCAGCTGGA  739

seq1  TATCTGATTAATTTTCTCCAACACTGCCTTTGGAATTTTTAATTGCGC  791
       ||||| |||||||  ||| |||||| |||||||| ||||||| ||||
seq2  -ATCTGGTTAATTT--TCCCACACTGGCTTTGGAAATTTTAATGGCGC  784

seq1: chr13_68673288_68674100
seq2: B6Ng01-005E17.g_374_1219

seq1  GGTCTTAGCCAATTAACATATCCTGTAAGCTTTTGGAAATAAAATTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGCCAATTAACATATCCTGTAAGCTTTTGGAAATAAAATTTTGA  50

seq1  AGTAAATTTGTACCAATTTACCAGTATAACTGAAACCTTAATTATTAAAA  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTAAATTTGTACCAATTTACCAGTATAACTGAAACCCTAATTATTAAAA  100

seq1  AGATATTGTCTCTGAATCTTATGAAGCAACAACTATTTCCCAGAACTTTA  150
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGATATTGCCTCTGAATCTTATGAAGCAACAACTATTCCCCAGAACTTTA  150

seq1  AACTTCCCTTTAGAGACATTAGTTAATAAAAATACTTTTCACTTAGGAAA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACTTCCCTTTAGAGACATTAGTTAAT-AAAATACTTTTCACTTAGGAAA  199

seq1  CAATATATACTGAAAGATTTAAACCTTTTGTTTCTTGTATTGAAGCCGAT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATATATACTGAAAGATTTAAACCTTTTGCTTCTTGTATTGAAGCCGAT  249

seq1  AATAAAAATTTCTTACATATTGTTAAGCTATGTTAGCCATACCTAGGGGC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTTCTTACATATTGTTAAGCTATGTTAGCCATACCTAGGGGC  299

seq1  AAAAACCTTTAATGGTCACCAGTTCACTAGAAGTAAACTCTTTACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTTAATGGTCACCAGTTCACTAGAAGTAAACTCTTTACAAATG  349

seq1  GAAAAA--TTAAACTTTTAAATCTATAATAA-------------------  379
      ||||||  |||||||||||||||||||||||                   
seq2  GAAAAAACTTAAACTTTTAAATCTATAATAATTTTACATGAAGTAGGCAA  399

seq1  ------TTGTAATGCC-TTTATAAGTTTTATAGCCTGATTGACCTTTCAT  422
            ||| |||||| |||||| |||||||||| |||||||||||| ||
seq2  GCTATTTTGAAATGCCTTTTATAGGTTTTATAGCTTGATTGACCTTTTAT  449

seq1  AAACTTTTGAATTTAAATTTTATTTTGAACAATGTCTGGCTAGGTCTGTT  472
      ||||||||||||||||||||||||| |||||| ||||||| |||||||| 
seq2  AAACTTTTGAATTTAAATTTTATTTAGAACAACGTCTGGCGAGGTCTGTA  499

seq1  ATAAGGCTCTAAGAAGTGCCACACAAGCCGAGCTGAAGCTGCTCCCCTCT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTCTAAGAAGTGCCACACAAGCCGAGCTGAAGCTGCTCCCCTCT  549

seq1  GAGCTCAGCCTCAACCCAAATGTAATCTGAACACTCTGCTAGAGTCTTGG  572
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAGCTCAGCCTCAACCCAAATGCAATCTGAACACTCTGCCAGAGTCTTGG  599

seq1  CTCAAAGATTATCTCTA-TGTTGAAGTATCCTTAAAGACCTGTTTTCTTG  621
      ||||||| ||||||||| ||||||||||||  |||||||||| |||||||
seq2  CTCAAAGGTTATCTCTATTGTTGAAGTATCTGTAAAGACCTG-TTTCTTG  648

seq1  TGTTTGTTTATGTTGTTTAGAAAGACTTCAACCTTGAGTTCTCAATTTTA  671
      |||||||| |||||||||||||||||| ||||||||||||| ||| ||||
seq2  TGTTTGTTCATGTTGTTTAGAAAGACTCCAACCTTGAGTTCCCAA-TTTA  697

seq1  AGCTAACTTTCTGTTACAAGCAAAAGGCTGTCTGCCCCTTTAAGAGCTCC  721
      | |||  |||||||||||||||||| |||| |||||||||||| ||||||
seq2  AACTACTTTTCTGTTACAAGCAAAA-GCTG-CTGCCCCTTTAAAAGCTCC  745

seq1  GATTG---TAAGGC-------TTTTTTAGCTGTAC-TTGGCTCCCAGCCA  760
        |||   |  |||        |||||||| |||| ||||||||||||| 
seq2  ATTTGCATTCGGGCCCCACAGCTTTTTAGC-GTACTTTGGCTCCCAGCC-  793

seq1  CAAT-GCAGCTAACTTATTAGCAAATGCTGTGTAATTTTGAAACTGCTTT  809
      |||| ||||||||||||  |||||  ||||||||| |||| |   |||||
seq2  CAATGGCAGCTAACTTAACAGCAATGGCTGTGTAA-TTTGTACTGGCTTT  842

seq1  TTAA  813
      ||||
seq2  TTAA  846