BAC Information

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BAC

Clone NameB6Ng01-005P15
ChromosomeY (Build37)9 (Build37)
Map Location 1,870,346 - 1,870,42973,066,029 - 73,067,131
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P15.bB6Ng01-005P15.g
ACCDH842961DH842962
length5001,104
definitionDH842961|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P15, 5' end.DH842962|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,429)(73,066,029 - 73,067,131)
sequence
gaattctgcactaaatccatctggtcctaggctttttttggctgggagac
tattaatgactgcttctatttctttagggtatatgggactgtttagatcg
ttaacttgatcctgatttaactttggtacctggtatctgtctagaaagtt
gtccatttcgtccaggttttccagttttgttgagtatagcctttggagct
gagacaaaaggatggaccatctagagactgccatatccagggatccatcc
cataattagcctccaaacgatgacaccattgcatacactagcaagcgttg
gctgaaaggacccttatatagctgtctcttgtgagactaggccggggcct
agcaaacacataaatggatgctcacagtcagttattggatggagcacagg
ggccccaatggaggagctagagaaagtatccaaggagctaaagagatctg
caaccctgtaggtgcaacaacattatgaactaaccagtaccccggagctc

gaattccatatgtataatgtggctttgataataaagtgtgaatcagtgaa
gtgagggaatatatggcagtgttaaaactaattggttattgcagagaaag
aagagggagagaggataacttatgggtagcaactcaggtgtagagagagg
gtggggtcaaagggacagtgttgggctaaagagtgaataactttttaaaa
acttattttcattttatgtgcatgtgtgtgttttcctttatgtaggtctg
tgctccatgtgtgtatagaggtcagaagagggagtcagatccccaggaac
tggagtcataatcagttgtgagccattatgtgagtgctgggaactgaacc
tggtcctctgcaagagcagcaaatgctcttaactaactgccgagccgtct
ctctggcccagactctgggatatttgagaatatgatctttgcttgcttgg
tctcctttttcctacttcctaacctcatgaagcaggcacatgaaggcctg
ctcaccagtgaactgtaggagtctgtttccaagtaggaagtgtgtaggaa
atctccaaaggcaacaaatgtgatcgatagcgatagttaacctgacagat
ccagaagggcctgggagacacacccgtgggcatgcctgtgagggacttta
tagtgtgaggtgggaagactcacaccaagtgtgggcagcaccatctcaca
ggctggggtcttggcctgaaatgaaagtggaaagcaagcaccagcatccc
ttcctgcttcctgactgtggatgcagcgtgaccagctgtttcatggtcct
gctgccatgcttttctctgctgtgatgagctgtgtcttcaagccatgagc
caaaaagacgccattcttcatgttgactcctctgtccctatacttttttg
gcaacagcaggaggaactttgtaaaaaggaacagaatatacctggcgtga
agatggagtctatgcccagtatgtcataagtattgtggaatatttttaag
atgaatgcgtagtgaaggattagtgatagtttttcttctctctcttcttc
ttctcttctggttttcagaacaaggtttcctcagtgcagtctggattcct
ggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870429
seq2: B6Ng01-005P15.b_463_546

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| |||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTC  84
      |||||||||||||||||||| |||||| ||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTC  84

seq1: chr9_73066029_73067131
seq2: B6Ng01-005P15.g_69_1172

seq1  GAATTCCATATGTATAATGTGGCTTTGATAATAAAGTGTGAATCAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTATAATGTGGCTTTGATAATAAAGTGTGAATCAGTGAA  50

seq1  GTGAGGGAATATATGGCAGTGTTAAAACTAATTGGTTATTGCAGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATATATGGCAGTGTTAAAACTAATTGGTTATTGCAGAGAAAG  100

seq1  AAGAGGGAGAGAGGATAACTTATGGGTAGCAACTCAGGTGTAGAGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGAGAGGATAACTTATGGGTAGCAACTCAGGTGTAGAGAGAGG  150

seq1  GTGGGGTCAAAGGGACAGTGTTGGGCTAAAGAGTGAATAACTTTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCAAAGGGACAGTGTTGGGCTAAAGAGTGAATAACTTTTTAAAA  200

seq1  ACTTATTTTCATTTTATGTGCATGTGTGTGTTTTCCTTTATGTAGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTCATTTTATGTGCATGTGTGTGTTTTCCTTTATGTAGGTCTG  250

seq1  TGCTCCATGTGTGTATAGAGGTCAGAAGAGGGAGTCAGATCCCCAGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATGTGTGTATAGAGGTCAGAAGAGGGAGTCAGATCCCCAGGAAC  300

seq1  TGGAGTCATAATCAGTTGTGAGCCATTATGTGAGTGCTGGGAACTGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATAATCAGTTGTGAGCCATTATGTGAGTGCTGGGAACTGAACC  350

seq1  TGGTCCTCTGCAAGAGCAGCAAATGCTCTTAACTAACTGCCGAGCCGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCTGCAAGAGCAGCAAATGCTCTTAACTAACTGCCGAGCCGTCT  400

seq1  CTCTGGCCCAGACTCTGGGATATTTGAGAATATGATCTTTGCTTGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCAGACTCTGGGATATTTGAGAATATGATCTTTGCTTGCTTGG  450

seq1  TCTCCTTTTTCCTACTTCCTAACCTCATGAAGCAGGCACATGAAGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTTCCTACTTCCTAACCTCATGAAGCAGGCACATGAAGGCCTG  500

seq1  CTCACCAGTGAACTGTAGGAGTCTGTTTCCAAGTAGGAAGTGTGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGTGAACTGTAGGAGTCTGTTTCCAAGTAGGAAGTGTGTAGGAA  550

seq1  ATCTCCAAAGGCAACAAATGTGATCGATAGCGATAGTTAACCTGACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAAGGCAACAAATGTGATCGATAGCGATAGTTAACCTGACAGAT  600

seq1  CCAGAAGGGCCTGGGAGACACACCCGTGGGCATGCCTGTGAGGGACTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGGCCTGGGAGACACACCCGTGGGCATGCCTGTGAGGGACTTTA  650

seq1  TAGTGTGAGGTGGGAAGACTCACACCAAGTGTGGGCAGCACCATCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGAGGTGGGAAGACTCACACCAAGTGTGGGCAGCACCATCTCACA  700

seq1  GGCTGGGGTCTTGGCCTGAAATGAAAGTGGAAAGCAAGCACCAGCATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGTCTTGGCCTGAAATGAAAGTGGAAAGCAAGCACCAGCATCCC  750

seq1  TTCCTGCTTCCTGACTGTGGATGCAGCGTGACCAGCTGTTTCATGGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTCCTGACTGTGGATGCAGCGTGACCAGCTGTTTCATGGTCCT  800

seq1  GCTGCCATGC-TTTCTCTGCTGTGATGAGCTGTGTCTTCAAGCCATGAGC  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGCTTTTCTCTGCTGTGATGAGCTGTGTCTTCAAGCCATGAGC  850

seq1  C-AAAAGACGCCATTCTTCATGTTGACTCCTCTGTCCCTATAC-TTTTTG  897
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAAAGACGCCATTCTTCATGTTGACTCCTCTGTCCCTATACTTTTTTG  900

seq1  GCCACAGCAAGGAGAACTTTGTAAAAAGGAACAG-ATATACCTGGCGTGA  946
      || |||||| |  ||||||||||||||||||||| |||||||||||||||
seq2  GCAACAGCAGGAGGAACTTTGTAAAAAGGAACAGAATATACCTGGCGTGA  950

seq1  AGATGGAGTCTATGCCCAGTATGTCATAAGTAATGT-GAACA-TTTTAAG  994
      |||||||||||||||||||||||||||||||| ||| ||| | |||||||
seq2  AGATGGAGTCTATGCCCAGTATGTCATAAGTATTGTGGAATATTTTTAAG  1000

seq1  AGAAATGCGTAGTGAAGGATTAGTGATAGGTTTTTCTTCTCTCTCTCTCT  1044
      |  ||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ATGAATGCGTAGTGAAGGATTAGTGATA-GTTTTTCTTCTCTCTCT-TCT  1048

seq1  CTCTCTCTCTCTGGTTTTTCAAGACAAGGTTT-CTCTGTGCAGTCCTGGA  1093
         ||||| ||||| ||||||  ||||||||| ||| ||||||| |||||
seq2  TCTTCTCT-TCTGG-TTTTCAGAACAAGGTTTCCTCAGTGCAGT-CTGGA  1095

seq1  TGTCCTGGAA  1103
      | ||||||||
seq2  T-TCCTGGAA  1104