BAC Information

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BAC

Clone NameB6Ng01-006C16
Chromosome9 (Build37)
Map Location 39,750,268 - 39,751,392
singlet/doubletsinglet
Overlap geneOlfr974
Upstream geneGA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015
Downstream geneOlfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C16.bB6Ng01-006C16.g
ACCDH843102DH843103
length1,118980
definitionDH843102|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C16, 5' end.DH843103|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gattctgtctcttctgctcttttctattctttttcctccttcttcatgtt
tacatatttgtcatttaaaatatggcggtaggccattgagatagcttaga
gggttaggaaacttgtccccaagcccaatgaccttatctcaagagcccac
atgggaaaaagggagagaccactctttcatcttgttctctgatactctgc
catgccctcttccacaaattaataaatgtaatttttaaatttcataaaat
agacatatctttttacataactctaagtttttgtttgtcttattttttct
taatatttggtgagtacacacacacacacacacacacacacacacacaca
cacagacacacacatttattcagatacatttatataccagtgggtaagaa
agtaagctagagagactagggaaaatgaaaagaaccacattggaagtaca
aacacttaaatggggaaatgaggttcacaaaaaaaaaaaaataaatctca
cagacattttattttgacatgacccttcaacttgaaatagttattcttgc
actcaagacaatttaagtgaatgtttagatttgtagcttcaagatgagtt
tttctacacagactaagagaacagcccactattcagagcctttctaatgg
cttctttgacatctttgttcctaaggctatatataaggggattaagcatg
ggaatcactgtggtgtaaaacacagaagccactttctcctgggttgggtt
acctgtagatggcttaaaatacatgaagatgatggagccatagaagactc
caacagctgccagatgggaactgcacgtactgaaggctttagacctgcca
tcagctgagcgtattcgcagaatgcttgcaaggatgaaggcgtatagatg
aatatggaaaacacacttgctaaaacataaatccaacaagtatcgtcacc
caaaactccttggtatagtctctagagctagctttattttagaggaggat
gtcactgagtcatgatgaatgacattagtttcccagaaaggacgactggt
aattgtagctgtatgaactgtagtcccgaaggacccctatatcaactcag
cagtgggaagtagcatgc
gaattctctccggttcttatatgtttatggatatctctttttttagatta
gggaagtttttttctataattttgttgaagatatttactggccctttatg
ttgggaatcatcactctcttctatacctattatacttatgtatagaagag
atcctttggtcctctcattgtgtcctagatttcctgcatgttttaagtta
gagtctttgcgttttgcattttctttgactgtggtgttattgttttctat
gttatcttctgcacctgatattctctcttttatctcttgtattcggttgg
tgatgcttccatctgtgactcctgatctcttttctacattttccatctcc
agagttggcttcttttgtgattgttttctttctatttccatttttagatc
ctggatggttttgctcaattccttcacaagtttggttgtgttgtcttgca
attctttaagggacttttctgtttcctctttaaaggcttcaagctgttta
cttgtgttctcgtgtatttcattaagggtgttatttatgtccttcttgaa
gtcctctattatcataagatgtgactttaaatcagagtcttgctattctg
gtgggtttgggtatccagggctcactgtgatgggagaactgggttctgat
aatgctaagtagccttggtttctgttgcttacattcttgttcttgcctct
agccatctggttatctctggtgttatctgttcttgctgtgtctgactgtg
gcttgccctccttaaagccaatgtgtcagaactcctaggagatctgttct
ctctgggaagaatttgggtatggacagctgtggcccagggtcagcactgt
ggtgcagaatgatcctgtccctgtctgttcttaggttcctgtgtcctgat
agttctgggcagaccttctttgggcaagattaagcaaaggtggtagtctt
acttgtgtcaaggctagtcaatactccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39750268_39751392
seq2: B6Ng01-006C16.b_39_1155 (reverse)

seq1  GCATGCTACTGTCCACTGCTGTGTATGCTAT-GGGGGCCTTCGGGGCTAC  49
      ||||||||||  ||||||||| || || ||| |||| |||||||| ||||
seq2  GCATGCTACTTCCCACTGCTGAGT-TGATATAGGGGTCCTTCGGGACTAC  49

seq1  AGTTCATACAAGCTAC-ATATCCAGTCGTTCCTTCTGTGGAACTAATGTC  98
      ||||||||| |||||| ||  |||||||| | ||||| | ||||||||||
seq2  AGTTCATAC-AGCTACAATTACCAGTCGTCCTTTCTGGGAAACTAATGTC  98

seq1  ATTCATCATTACTTCTGTGACATCCTCCCTCTTATAAATATAGCTTGCTC  148
      ||||||||| || || |||||||||| |||||   ||||| |||| ||||
seq2  ATTCATCATGAC-TCAGTGACATCCT-CCTCT--AAAATAAAGCTAGCTC  144

seq1  TAGAGACTATACCAAGGAGTTTTGGGTGATGATACTTGTTGGATTTAATG  198
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TAGAGACTATACCAAGGAGTTTTGGGTGACGATACTTGTTGGATTT-ATG  193

seq1  TTTTTGCAAGTGTGTTTTCCATCTTCATCTCTTACGCCTTCATCCTTGCA  248
      |||| ||||||||||||||||| |||||||  ||||||||||||||||||
seq2  TTTTAGCAAGTGTGTTTTCCATATTCATCT-ATACGCCTTCATCCTTGCA  242

seq1  AGCATTCTGCGAATACGCTCAGCTGATGGCAGGTCTAAAGCCTTCAGTAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGCGAATACGCTCAGCTGATGGCAGGTCTAAAGCCTTCAGTAC  292

seq1  CTGCAGTTCCCATCTTGCAGCTGTTGGAGTCTTCTATGGCTCCATCATCT  348
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTCCCATCTGGCAGCTGTTGGAGTCTTCTATGGCTCCATCATCT  342

seq1  TCATGTATTTTAAGCCATCTACAGGTAACACAACCCAGGAGAAAGTGGCT  398
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCATGTATTTTAAGCCATCTACAGGTAACCCAACCCAGGAGAAAGTGGCT  392

seq1  TCTGTCTTTTACACCACAGTGATTCCCATGCTTAATCCCCTTATATATAG  448
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTACACCACAGTGATTCCCATGCTTAATCCCCTTATATATAG  442

seq1  CCTTAGGAACAAAGATGTCAAAGAAGCCATTAAAAAGGCTCTGAATAGTG  498
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTAGGAACAAAGATGTCAAAGAAGCCATTAGAAAGGCTCTGAATAGTG  492

seq1  GGCTGTTCTCTTAGTCTGTGTAGAAAAACTCATCTTGAAGCTACAAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCTCTTAGTCTGTGTAGAAAAACTCATCTTGAAGCTACAAATCT  542

seq1  AAACATTCACTTAAATTGTCTTGAGTGCAAGAATAACTATTTCAAGTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCACTTAAATTGTCTTGAGTGCAAGAATAACTATTTCAAGTTGA  592

seq1  AGGGTCATGTCAAAATAAAATGTCTGTGAGATTTATTTTTTTTTTTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGTCAAAATAAAATGTCTGTGAGATTTATTTTTTTTTTTTTGT  642

seq1  GAACCTCATTTCCCCATTTAAGTGTTTCTACTTCCAATGTGGTTCTTTTC  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAACCTCATTTCCCCATTTAAGTGTTTGTACTTCCAATGTGGTTCTTTTC  692

seq1  ATTTTCCCTAGTCTCTCTAGCTTACTTTCTTACCCACTGGTATATAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTAGTCTCTCTAGCTTACTTTCTTACCCACTGGTATATAAATG  742

seq1  TATCTGAATAAATGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATAAATGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  792

seq1  TGTGTGTGTGTACTCACCAAATATTAAGAAAAAATAAGACAAACAAAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACTCACCAAATATTAAGAAAAAATAAGACAAACAAAAAC  842

seq1  TTAGAGTTATGTAAAAAGATATGTCTATTTTATGAAATTTAAAAATTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTATGTAAAAAGATATGTCTATTTTATGAAATTTAAAAATTACA  892

seq1  TTTATTAATTTGTGGAAGAGGGCATGGCAGAGTATCAGAGAACAAGATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTTGTGGAAGAGGGCATGGCAGAGTATCAGAGAACAAGATGA  942

seq1  AAGAGTTGTCTCTCCCTTTTTCCCATGTGGGCTCTTGAGATAAGGTCATT  998
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGTCTCTCCCTTTTTCCCATGTGGGCTCTTGAGATAAGGTCATT  992

seq1  GGGCTTGGGGACAAGTTTCCTAACCCTCTAAGCTATCTCAATGGCCTACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGGGACAAGTTTCCTAACCCTCTAAGCTATCTCAATGGCCTACC  1042

seq1  GCCATATTTTAAATGACAAATATGTAAACATGAAGACTGAGGAAAAAGAA  1098
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GCCATATTTTAAATGACAAATATGTAAACATGAAGAAGGAGGAAAAAGAA  1092

seq1  TATGAAAATGAGCAGAAGAGACAGAAT  1125
      || ||||| ||||||||||||||||||
seq2  TA-GAAAA-GAGCAGAAGAGACAGAAT  1117