BAC Information

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BAC

Clone NameB6Ng01-006E07
Chromosome9 (Build37)
Map Location 111,002,372 - 111,180,069
singlet/doubletdoublet
Overlap geneLrrfip2, Mlh1, Epm2aip1
Upstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
Downstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E07.bB6Ng01-006E07.g
ACCDH843175DH843176
length1,131806
definitionDH843175|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E07, 5' end.DH843176|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,178,929 - 111,180,069)(111,002,372 - 111,003,140)
sequence
gaattccacattttttttttttttaaatgagctgaagatcttgtagtcag
aagggctgactaagacatctttctcagaaacaagtttacttacttttaag
ttccaggagagccagaaatcatctgtaaaggaaagtaagtactaaatagc
atgccactttctcctagggttgatgcctacaaaaggaaaaatggacatta
actttttgcagtcttgtctttctccaatactgaaggtgatttttagatta
ctgaactcagttcaatctaagcagttatccaatgttttccctctatatgt
aggttcctttggaaattaaaacaaaataaaggctctgtattatggactta
acactagagagctgatttttgagtacacctaggtttgaatcttgacatta
ctactagtttactagggtaaattacagtctgttttcttaacaacattcac
ataatatttgaaccacatgctaagcactgcactaaattcaagaaacacaa
caatgagattactagtcgcaagtaaggtgaatttcatttcttaatttgca
atacatggctaagaactattcagagaacaggcaaaatgtccgtgacggtc
aaaaaagactgtgaaggtttcataaaaaacaaaaaaaaccacacaagtat
ttatttgcccaagcatttgttcaaatgccaggcactagagatgaaacaat
ggattaaacgtccctctggtccagtctagcaatgaccaacgcacagtaag
agatgctaagtagaaaggacagggtgttcagcacgtgtagttgggtacct
ggcctagaggatacccctgaagcttcttagatgatatgtaagccaagttc
tgcaagatgaacagaagtttgtcttctatctaccttgatagcaatgaagg
caggggagtggtatgagtgatctgactgtaaagcctctgctgaaggaaaa
tgaaaaggaaagacaagtcttgggagaaagagccaagatgttgaagagca
aaaaagtagccattattagcacttatgattttcacgggaatcctccgaga
caaaatttggagttttgcatacaggtgataactaagtcataaaaagatca
actacgaggatgtaggaatgaggtaagggag
gaattcactttgtacacctggctggcctcagactcagagattcacttgct
gctgcctcctaagtgttgagattaaaagtgtggaacacactgcctggctt
ttttttttcttttttttagacatggttttctttttttttttttttttttt
ttttttttttttggttggttggttggttggttcatttttttttttttttt
tttttttggttttttttttcccttttttattagggatttcccccatttac
atttgcaaaggtataccaaaagtcccccctagccacccaccccctctccc
ctacccacccactccccttttatgggcccggggttccccctaaaaatggg
tttcttattccctaaaatcccatggaacataggaaaatgcagaatgacct
tatagtctaaagttcccgggagttgtgtcttggctatctaaatttataat
atgctaattgaacatttattggtaatggacaattaaaaaaaggggctttt
caatggtacttagccacaggaatgaggatctcttggatttggatagcatt
tgatagttcacaaaattatagttccacgcatcatctcttaggatcctcac
gcaagggctggagaaaagcacacaaaggcttactattctaaatgaaagaa
aagaacctccaagaattcaccatgggaaaggaacaatgtgaaggagtacc
agcacacctggtcatcacaagtagagccagggaggagtgctcaggcacac
tgtcaattcacaaattagagcagtgggaggagatggctcagcaacctgtc
aatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111178929_111180069
seq2: B6Ng01-006E07.b_47_1177 (reverse)

seq1  CTCCCTTACCTCATATTCCTACATTACTTCCTTAGTTGATCTCTTTCTAT  50
      ||||||||||||  ||||||||||  | | | |||||||  ||||| |||
seq2  CTCCCTTACCTC--ATTCCTACAT--CCT-CGTAGTTGA--TCTTTTTAT  43

seq1  GACTTTAGTTATCACCTGTATGCAGATACTTCCAAATTTTTGTCTCCTGA  100
      ||| |||||||||||||||||||| | || |||||| |||||||||    
seq2  GAC-TTAGTTATCACCTGTATGCA-AAAC-TCCAAA-TTTTGTCTCGGAG  89

seq1  GATTTCCCTGTAAATCATAGTTGCTAAT-ATTGCTAACTCTTTGCTCTTT  149
      |||| || || ||||||||  ||||||| || ||||  | ||||||||| 
seq2  GATTCCCGTGAAAATCATAAGTGCTAATAATGGCTACTTTTTTGCTCTTC  139

seq1  CACATCTTGGCTCTTTCTCCC-AGACCTGCTCTTCCTCTCACTTTCCCTT  198
       |||||||||||||||||||| |||| ||   ||||| |   ||| ||||
seq2  AACATCTTGGCTCTTTCTCCCAAGACTTGTCTTTCCTTTTCATTTTCCTT  189

seq1  CAGCAGATGGCTTTACAGTCAGATCACTCATACCACTCCCCTGCCTTCAT  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGA-GGCTTTACAGTCAGATCACTCATACCACTCCCCTGCCTTCAT  238

seq1  TGCTATCAAGGTAGATAGAAGACAAACTTCTGTTCATCTTGCAGAACTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCAAGGTAGATAGAAGACAAACTTCTGTTCATCTTGCAGAACTTG  288

seq1  GCTTACATATCATCTAAGAAGCTTCAGGGGTATCCTCTAGGCCAGGTACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATATCATCTAAGAAGCTTCAGGGGTATCCTCTAGGCCAGGTACC  338

seq1  CAACTACACGTGCTGAACACCCTGTCCTTTCTACTTAGCATCTCTTACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACACGTGCTGAACACCCTGTCCTTTCTACTTAGCATCTCTTACTG  388

seq1  TGCGTTGGTCATTGCTAGACTGGACCAGAGGGACGTTTAATCCATTGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGGTCATTGCTAGACTGGACCAGAGGGACGTTTAATCCATTGTTT  438

seq1  CATCTCTAGTGCCTGGCATTTGAACAAATGCTTGGGCAAATAAATACTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAGTGCCTGGCATTTGAACAAATGCTTGGGCAAATAAATACTTG  488

seq1  TGTGGTTTTTTTTGTTTTTTATGAAACCTTCACAGTCTTTTTTGACCGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTTTTTGTTTTTTATGAAACCTTCACAGTCTTTTTTGACCGTC  538

seq1  ACGGACATTTTGCCTGTTCTCTGAATAGTTCTTAGCCATGTATTGCAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACATTTTGCCTGTTCTCTGAATAGTTCTTAGCCATGTATTGCAAAT  588

seq1  TAAGAAATGAAATTCACCTTACTTGCGACTAGTAATCTCATTGTTGTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGAAATTCACCTTACTTGCGACTAGTAATCTCATTGTTGTGTT  638

seq1  TCTTGAATTTAGTGCAGTGCTTAGCATGTGGTTCAAATATTATGTGAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTAGTGCAGTGCTTAGCATGTGGTTCAAATATTATGTGAATG  688

seq1  TTGTTAAGAAAACAGACTGTAATTTACCCTAGTAAACTAGTAGTAATGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGAAAACAGACTGTAATTTACCCTAGTAAACTAGTAGTAATGTC  738

seq1  AAGATTCAAACCTAGGTGTACTCAAAAATCAGCTCTCTAGTGTTAAGTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAAACCTAGGTGTACTCAAAAATCAGCTCTCTAGTGTTAAGTCC  788

seq1  ATAATACAGAGCCTTTATTTTGTTTTAATTTCCAAAGGAACCTACATATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAGAGCCTTTATTTTGTTTTAATTTCCAAAGGAACCTACATATA  838

seq1  GAGGGAAAACATTGGATAACTGCTTAGATTGAACTGAGTTCAGTAATCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAACATTGGATAACTGCTTAGATTGAACTGAGTTCAGTAATCTA  888

seq1  AAAATCACCTTCAGTATTGGAGAAAGACAAGACTGCAAAAAGTTAATGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCTTCAGTATTGGAGAAAGACAAGACTGCAAAAAGTTAATGTC  938

seq1  CATTTTTCCTTTTGTAGGCATCAACCCTAGGAGAAAGTGGCATGCTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCTTTTGTAGGCATCAACCCTAGGAGAAAGTGGCATGCTATTT  988

seq1  AGTACTTACTTTCCTTTACAGATGATTTCTGGCTCTCCTGGAACTTAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTACTTTCCTTTACAGATGATTTCTGGCTCTCCTGGAACTTAAAA  1038

seq1  GTAAGTAAACTTGTTTCTGAGAAAGATGTCTTAGTCAGCCCTTCTGACTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAACTTGTTTCTGAGAAAGATGTCTTAGTCAGCCCTTCTGACTA  1088

seq1  CAAGATCTTCAGCTCATTTAAAAAAAAAAAAAATGTGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTTCAGCTCATTTAAAAAAAAAAAAAATGTGGAATTC  1131

seq1: chr9_111002372_111003140
seq2: B6Ng01-006E07.g_68_872

seq1  GAATTCACTTTGTACACCTGGCTGGCCTCAGACTCAGAGATTCACTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTACACCTGGCTGGCCTCAGACTCAGAGATTCACTTGCT  50

seq1  GCTGCCTCCTAAGTGTTGAGATTAAAAGTGTGGAACACACTGCCTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCTAAGTGTTGAGATTAAAAGTGTGGAACACACTGCCTGGCTT  100

seq1  TTTTTTTTCTTTTTTTTAGACATGGTTTTCTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTTTTAGACATGGTTTTCTTTTTTTTTTTTTTTTTTTT  150

seq1  TTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTCATTTTTTTTTTTTTTTT  200
      ||||||||||||| ||| ||| ||| ||| ||||||||||||||||||||
seq2  TTTTTTTTTTTTGGTTGGTTGGTTGGTTGGTTCATTTTTTTTTTTTTTTT  200

seq1  TTTTTTTGTTTTTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTAC  250
      |||||||| |||||||||||| |||||||||||| ||||| | |||||||
seq2  TTTTTTTGGTTTTTTTTTTCCCTTTTTTATTAGGGATTTCCCCCATTTAC  250

seq1  ATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCC  300
      |||||||| | ||||||||||||||||| |||||||||||||||||||||
seq2  ATTTGCAAAGGTATACCAAAAGTCCCCCCTAGCCACCCACCCCCTCTCCC  300

seq1  CTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTTAGACATGGT  350
      ||||||||||||||||||||||||| || || ||||||| || | |||| 
seq2  CTACCCACCCACTCCCCTTTTATGGGCCCGGGGTTCCCCCTAAAAATGGG  350

seq1  TTTCTTATTCCTTAGATTCCTATGTAACATAGGAGAATGCAGAATGACCT  400
      ||||||||||| || | ||| ||| ||||||||| |||||||||||||||
seq2  TTTCTTATTCCCTAAAATCCCATGGAACATAGGAAAATGCAGAATGACCT  400

seq1  TATAGTCTAAAGTTCTCGGTAGTTGTGTCTTGGCTATCTAAATTTATAAT  450
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  TATAGTCTAAAGTTCCCGGGAGTTGTGTCTTGGCTATCTAAATTTATAAT  450

seq1  ATGCTAATTGAACATTTATTGTTAATGAGCAATTAAAAGAAGGGGCTTTT  500
      ||||||||||||||||||||| |||||  ||||||||| |||||||||||
seq2  ATGCTAATTGAACATTTATTGGTAATGGACAATTAAAAAAAGGGGCTTTT  500

seq1  CAATGTTACTTAGCCACAGTAATGAGGATCTCTTGCATTTGTATAGCATT  550
      ||||| ||||||||||||| ||||||||||||||| ||||| ||||||||
seq2  CAATGGTACTTAGCCACAGGAATGAGGATCTCTTGGATTTGGATAGCATT  550

seq1  TGATAGTTCACAAAATTATAGTTCCACGCATCATCTCTTAGGATCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTCACAAAATTATAGTTCCACGCATCATCTCTTAGGATCCTCAC  600

seq1  GCAAGGCCTGGAGATAGGCACACAAGGCCTTACTATTCTAATTGAAAGAA  650
      |||||| ||||||| | |||||||| | ||||||||||||| ||||||||
seq2  GCAAGGGCTGGAGAAAAGCACACAAAGGCTTACTATTCTAAATGAAAGAA  650

seq1  GAGAACTTCCCAAGATTACACAAGGGACAAGGGAGCAGTGTG-AGGAGT-  698
       ||||| | |||||| | ||| | ||  || ||| || |||| |||||| 
seq2  AAGAACCT-CCAAGAATTCACCATGG-GAAAGGAACAATGTGAAGGAGTA  698

seq1  --------------------------AGCCAG-------------GCCAC  709
                                ||||||             | |||
seq2  CCAGCACACCTGGTCATCACAAGTAGAGCCAGGGAGGAGTGCTCAGGCAC  748

seq1  ACCTGTCAA-TCACAGAGTTAGGAGCAGTGGGAGGAG--TGCTCAGGCCA  756
      | ||||||| ||||| | ||| |||||||||||||||   ||||||  ||
seq2  A-CTGTCAATTCACA-AATTA-GAGCAGTGGGAGGAGATGGCTCAG--CA  793

seq1  CACCTGTCAATCA  769
       ||||||||||||
seq2  -ACCTGTCAATCA  805