BAC Information

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BAC

Clone NameB6Ng01-006E09
Chromosome9 (Build37)
Map Location 50,069,668 - 50,070,685
singlet/doubletsinglet
Overlap genenone
Upstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806
Downstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E09.bB6Ng01-006E09.g
ACCDH843179DH843180
length7521,011
definitionDH843179|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E09, 5' end.DH843180|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgaaaggattagaagggttaggggccatggccttgttggaag
aaatgtgtccctgtagggttggttttaagatttcaaaagtccatatcagg
tcccccacctctcgtccccttcagataaggatgtagtgttctcagcaact
tctccatctccatctgtgttgccatgccaccatgctgcctatcatgatga
taatggactaaccctctgaaatggttaggaagtccacacttaaatgcttt
cttgtatatgaactgccttggtcatgtgtgggcctaggtaccagaggttt
tccacggagatctctgtccaggccgggtgggaaggctccagtgaagggaa
gtgagtgcaggcagggagaccaagtctctgccacgccttccaggtcgctc
cctctgagcctttctgaactgagttgggtcaggctgggccagagaaaagc
tgacaatccagtgaggagtgcggcaggaccttgggtggctcttcgggaga
gaagatctcttcataagtgttgcatatggctcttggaacaaaaggctcag
acaaaggaatagttcttgcatacctttaattccctgcatggctttatata
caattctgggggtgattcagggtctgacagcaggcacctctcattggctt
ggactgagagtttgggggaaaccttatttgcatttgggaaggcttagtgc
tgttcctaagtggctgatagccacacctctcctgtgggggttgtgggggg
ag
gaattcatgggctccaaagtgtttagagaatcgaagtcacaaggcagaaa
tgggtgttccccagacaatgacattcccatattgccagtctgcagaaact
ccaaggtctttactcagctctttccacctaagtgcaccatcagcacctgg
ggtttctgcatgtgcctctcttctttgctgctacacacacacacacacac
acacacacacacacacacacacgcaggaacaccatctccccagttttccc
acgtgactaagggtctattgatgacgtatttgttgtgccctaccacaaat
atctttaccttctttggtcctcttgcattcaggaaaacagacttctgaga
aacttgcttgttctcagagatatgtaggcattattgaattgtgggaatga
atgtgcagtttcagactggaaactcccagaggttgttggaaatagtaggg
ctgagaatgcgcagtagaaagcccagtcctggtttttcctggtaagatgg
gtacaccctgcttccctccccttgatcaggaccttcagactctacgactg
ccaagatgtcccttcatagctgattcattagcaacagtaggtttctcaga
ggttcttctccaagcctcatcagaaaacactttctcgggtttagtacttg
aaattcagaacttgaataggtgtgttttgtcttcagggagttatcttaaa
atccttccttgcatagaaaaaaaaatttaagatgttacctgggaaaaatt
gatgtaagatcacagccgaggatagctatgaatgctacccaacatataat
tgtaaacttacttaaaacactatgaggaggttgtttttttttctgtttgt
ttgctctgtctgtctgttcaatttgtttgcagaaacttgattgcacagaa
ctttctaaatagcatgtcatgttgcaatatccaagggctggaacagtgcc
tgggagaattttaaaatgagaagaaccttcatggtttgtatagttttcct
tgtaatctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50069668_50070685
seq2: B6Ng01-006E09.g_70_1080

seq1  GAATTCATGGGCTCCAAAGTGTTTAGAGAATCGAAGTCACAAGGCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGCTCCAAAGTGTTTAGAGAATCGAAGTCACAAGGCAGAAA  50

seq1  TGGGTGTTCCCCAGACAATGACATTCCCATATTGCCAGTCTGCAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTCCCCAGACAATGACATTCCCATATTGCCAGTCTGCAGAAACT  100

seq1  CCAAGGTCTTTACTCAGCTCTTTCCACCTAAGTGCACCATCAGCACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTTTACTCAGCTCTTTCCACCTAAGTGCACCATCAGCACCTGG  150

seq1  GGTTTCTGCATGTGCCTCTCTTCTTTGCTGCTACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGCATGTGCCTCTCTTCTTTGCTGCTACACACACACACACACAC  200

seq1  ACACACACACACACACACACACGCAGGAACACCATCTCCCCAGTTTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACGCAGGAACACCATCTCCCCAGTTTTCCC  250

seq1  ACGTGACTAAGGGTCTATTGATGACGTATTTGTTGTGCCCTACCACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACTAAGGGTCTATTGATGACGTATTTGTTGTGCCCTACCACAAAT  300

seq1  ATCTTTACCTTCTTTGGTCCTCTTGCATTCAGGAAAACAGACTTCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACCTTCTTTGGTCCTCTTGCATTCAGGAAAACAGACTTCTGAGA  350

seq1  AACTTGCTTGTTCTCAGAGATATGTAGGCATTATTGAATTGTGGGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTGTTCTCAGAGATATGTAGGCATTATTGAATTGTGGGAATGA  400

seq1  ATGTGCAGTTTCAGACTGGAAACTCCCAGAGGTTGTTGGAAATAGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGTTTCAGACTGGAAACTCCCAGAGGTTGTTGGAAATAGTAGGG  450

seq1  CTGAGAATGCGCAGTAGAAAGCCCAGTCCTGGTTTTTCCTGGTAAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGCGCAGTAGAAAGCCCAGTCCTGGTTTTTCCTGGTAAGATGG  500

seq1  GTACACCCTGCTTCCCTCCCCTTGATCAGGACCTTCAGACTCTACGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCCTGCTTCCCTCCCCTTGATCAGGACCTTCAGACTCTACGACTG  550

seq1  CCAAGATGTCCCTTCATAGCTGATTCATTAGCAACAGTAGGTTTCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGTCCCTTCATAGCTGATTCATTAGCAACAGTAGGTTTCTCAGA  600

seq1  GGTTCTTCTCCAAGCCTCATCAGAAAACACTTTCTCGGGTTTAGTACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTCTCCAAGCCTCATCAGAAAACACTTTCTCGGGTTTAGTACTTG  650

seq1  AAATTCAGAACTTGAATAGGTGTGTTTTGTCTTCAGGGAGTTATCTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGAACTTGAATAGGTGTGTTTTGTCTTCAGGGAGTTATCTTAAA  700

seq1  ATCCTTCCTTGCATAGAAAAAAAAATTTAAGATGTTACCTGGGAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTTGCATAGAAAAAAAAATTTAAGATGTTACCTGGGAAAAATT  750

seq1  GATGTAAGATCACAGCCGAGGATAGCTATGAATGCTACCCAACATATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGATCACAGCCGAGGATAGCTATGAATGCTACCCAACATATAAT  800

seq1  TGTAAACTTACTTAAAACACTATGAGGAGGTTGTTTTTTTTTTCTGTTTG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTAAACTTACTTAAAACACTATGAGGAGGTTG-TTTTTTTTTCTGTTTG  849

seq1  TTTTGCTCTGTTCTGTTCTGTTCTATTTTGTTTTTGCAGAAACTTGATTG  900
       ||||||||| |||| ||||||| |||   | ||||||||||||||||||
seq2  -TTTGCTCTG-TCTG-TCTGTTCAATT---TGTTTGCAGAAACTTGATTG  893

seq1  CACAGAACTTTCTAAATAGCAATGTCATGTTGCAATATCCAAAGGCTGG-  949
      |||||||||||||||||||| ||||||||||||||||||||| |||||| 
seq2  CACAGAACTTTCTAAATAGC-ATGTCATGTTGCAATATCCAAGGGCTGGA  942

seq1  ACA-TGCCTGGGAGATTTTTAAAATGAG-AGAACCTTCATGGTTTGTATT  997
      ||| ||||||||||| |||||||||||| ||||||||||||||||||| |
seq2  ACAGTGCCTGGGAGAATTTTAAAATGAGAAGAACCTTCATGGTTTGTA-T  991

seq1  AGTTTTCTTGTTAATTCTGTA  1018
      ||||||| |  ||| ||||||
seq2  AGTTTTCCTTGTAA-TCTGTA  1011