BAC Information

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BAC

Clone NameB6Ng01-006F21
Chromosome9 (Build37)
Map Location 92,298,736 - 92,299,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F21.bB6Ng01-006F21.g
ACCDH843246DH843247
length1,2271,056
definitionDH843246|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F21, 5' end.DH843247|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaagctaagactttgaatgtggcatgggagagagcaagcacaa
ggaataaatagcatccaacgtgagcttaaggtggtaacacctggaacgca
gagcaaagctcttgaaactacacctcatcctgaacttgagactcaagagg
caagatggcactgttcagtttcctgtttctgtccctgagtttctgtgtta
acatgccacaatgcgatgaaacatgcacagagaagaaagaatcacaacac
acgacaggataggatgctgcctgtgaagctggtgacaaatgatgtgattg
tggatttacagaaagctgagaggcttgggcaaataattacttaacttcat
tttctcatgtctaaaatgaaaatgatatatctaccttggatgcatggaga
ataaaatgtgccagtgtatggcaaattctaacagtcgcaagaatgctttg
aacacagtagacactgagaaaaaaacagatgaacgactgacaccatcatc
attaacattacaggaatagctcagggcatcctgtctattttacagtgagg
tttccaacacaacaaatgtgccgggactcttttatctgctttggcataaa
atctcaaggaaaacctgaaaataatgtatttcaagactatgtgacttcac
agattagattatttgttgagaagcagcagaacaaagagctctgggaaaat
tgatccaaaacattaaaatatgtcactctggaaattgctatttacttttt
atttcaagctgttaataaattccatcatatgtgtgtgtgtgtgtgtattc
cagaatccaaaaaaaattgtataaagatgtgtgtataatatatatgtata
ttctagagtatttgtatgtactctaatatacatatatgcttgagtaaagt
gactataacttttatatcagacaatatttggggaggtcatgagcactggt
gctagctagttttatgtcagccttgacacaagctaaaggtattaaggcta
gaggggagtccttaattgagagaactgcctccataagaatggcacccgta
gtcaaatctgtatcaaaattttcctgaataatgaattgctgtggtgacca
atgtgaggaaccctcagcttacttttcggtgtggccatgcccggcctgac
tgaatcttaacatatatagaatcggaagtgagcaggctagagggagacag
acaggtaaataacgctttcatgacctt

gaattcagaactcttcagctggggaatggtggtaataaaggttcccgtaa
aacagactgttgagaaggatccagcctggattcagaactcctcagctggg
gaatggtggtaatgaagaagtgttcccgtaaaacagactgttgagaagga
ttcaactgtgtgaattcagaactcttcagctggggaatggtggtaatgaa
gtgttcccgtaacacagactgttgagaaggattcaactgcgtgaattcag
aactcttcagctggggaacagggtactcgtaagtatagctttacaaggta
agtctggccttgaactttctaacgaaattcaagacagtctatcagaagta
aagtgggaaatagctttacaaggtatgtttggccttgaactttctctagt
gttaggagcctttttgttccttttcacatgttatcaagtggttaaggcag
ggctgaaaattctggatgaaattcagggcaatctatcagaagtaaagcgg
ggagagagagtaggagcaaagaggaaatatggtacacaaaataagtatac
aggcctttccaagggtcttgaacccgaggaaaagtttaggtcaggtaaga
atacctggggagagattagaaggaaggaaaagaaaaaagaaaagaaaaaa
gatcaattagcggaggtctctaggagaaggagcctatactcatcactagg
tgagctcaaggagccagctcttaatagttctgaatcagatgaaaaggcta
ttagggcctggaaggcactctcccgagcaggtgaagccactggacaacta
acaaagatcgtccatggacctcaggagtcattctcagattttgtggccag
aatgacagagcagcagagcatattttggagattcagagcaagctgcactc
tggtagatagcttaattatgagcaagcacgcaggatgtcgagcgcatagc
ccaagaaagaacaaaggttacaaaactggctcaggttgtcgggagcttgg
gggacctctcattatgcgttacttccattagttaaaagaaatacgaggcg
agccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92298736_92299950
seq2: B6Ng01-006F21.b_45_1271 (reverse)

seq1  AAGGTCATGGAAGGCTGCTATTTA-CTGTCTTGCTCCTCATAGCTTGCTC  49
      ||||||||| |||   | |||||| ||||||  ||||   |||| |||||
seq2  AAGGTCATGAAAG--CGTTATTTACCTGTCTGTCTCCCTCTAGCCTGCTC  48

seq1  AC-TCCGATTCCTTATATTATCTAGGATCA-TCAGGCCAGGCATGGCACC  97
      || ||||||||  |||| | |  ||  ||| ||||||| ||||||||  |
seq2  ACTTCCGATTCTATATA-TGTTAAGATTCAGTCAGGCCGGGCATGGCCAC  97

seq1  ACCG-AAAGTAAGCTGA-GGTTCCTCACATTGGTCACCACAGCAA-TCAT  144
      |||| |||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ACCGAAAAGTAAGCTGAGGGTTCCTCACATTGGTCACCACAGCAATTCAT  147

seq1  TAATCAGGAAAA-TTTGATACAGATTTGACTAC-GGTG-CAATCTTATGG  191
      || ||||||||| |||||||||||||||||||| |||| || ||||||||
seq2  TATTCAGGAAAATTTTGATACAGATTTGACTACGGGTGCCATTCTTATGG  197

seq1  AGGCAGTT-TCTCAATT-AGGAGT-CCCTCTAGCC-TAATAGCCTTAGCT  237
      |||||||| |||||||| |||| | |||||||||| ||||| | ||||||
seq2  AGGCAGTTCTCTCAATTAAGGACTCCCCTCTAGCCTTAATACCTTTAGCT  247

seq1  TGTGTCAA-GCTGACATAAAACTAGCTAGCA-CAGTGCTCATGACCTTCC  285
      |||||||| |||||||||||||||||||||| ||||||||||||||| ||
seq2  TGTGTCAAGGCTGACATAAAACTAGCTAGCACCAGTGCTCATGACCTCCC  297

seq1  CAAATATTGTCTGATATAAAAGTTATAGTCACTTTACTCAAGCATATATG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGTCTGATATAAAAGTTATAGTCACTTTACTCAAGCATATATG  347

seq1  TATATTAGAGTACATACAAATACTCTAGAATATACATATATATTATACAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGAGTACATACAAATACTCTAGAATATACATATATATTATACAC  397

seq1  ACATCTTTATACAATTTTTTTTGGATTCTGGAATACACACACACACACAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTATACAATTTTTTTTGGATTCTGGAATACACACACACACACAC  447

seq1  ATATGATGGAATTTATTAACAGCTTGAAATAAAAAGTAAATAGCAATTTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGGAATTTATTAACAGCTTGAAATAAAAAGTAAATAGCAATTTC  497

seq1  CAGAGTGACATATTTTAATGTTTTGGATCAATTTTCCCAGAGCTCTTTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGACATATTTTAATGTTTTGGATCAATTTTCCCAGAGCTCTTTGT  547

seq1  TCTGCTGCTTCTCAACAAATAATCTAATCTGTGAAGTCACATAGTCTTGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTTCTCAACAAATAATCTAATCTGTGAAGTCACATAGTCTTGA  597

seq1  AATACATTATTTTCAGGTTTTCCTTGAGATTTTATGCCAAAGCAGATAAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTATTTTCAGGTTTTCCTTGAGATTTTATGCCAAAGCAGATAAA  647

seq1  AGAGTCCCGGCACATTTGTTGTGTTGGAAACCTCACTGTAAAATAGACAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCGGCACATTTGTTGTGTTGGAAACCTCACTGTAAAATAGACAG  697

seq1  GATGCCCTGAGCTATTCCTGTAATGTTAATGATGATGGTGTCAGTCGTTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTGAGCTATTCCTGTAATGTTAATGATGATGGTGTCAGTCGTTC  747

seq1  ATCTGTTTTTTTCTCAGTGTCTACTGTGTTCAAAGCATTCTTGCGACTGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTTTTTCTCAGTGTCTACTGTGTTCAAAGCATTCTTGCGACTGT  797

seq1  TAGAATTTGCCATACACTGGCACATTTTATTCTCCATGCATCCAAGGTAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGCCATACACTGGCACATTTTATTCTCCATGCATCCAAGGTAG  847

seq1  ATATATCATTTTCATTTTAGACATGAGAAAATGAAGTTAAGTAATTATTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATTTTCATTTTAGACATGAGAAAATGAAGTTAAGTAATTATTT  897

seq1  GCCCAAGCCTCTCAGCTTTCTGTAAATCCACAATCACATCATTTGTCACC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCCTCTCAGCTTTCTGTAAATCCACAATCACATCATTTGTCACC  947

seq1  AGCTTCACAGGCAGCATCCTATCCTGTCGTGTGTTGTGATTCTTTCTTCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACAGGCAGCATCCTATCCTGTCGTGTGTTGTGATTCTTTCTTCT  997

seq1  CTGTGCATGTTTCATCGCATTGTGGCATGTTAACACAGAAACTCAGGGAC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGTTTCATCGCATTGTGGCATGTTAACACAGAAACTCAGGGAC  1047

seq1  AGAAACAGGAAACTGAACAGTGCCATCTTGCCTCTTGAGTCTCAAGTTCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGAAACTGAACAGTGCCATCTTGCCTCTTGAGTCTCAAGTTCA  1097

seq1  GGATGAGGTGTAGTTTCAAGAGCTTTGCTCTGCGTTCCAGGTGTTACCAC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGTGTAGTTTCAAGAGCTTTGCTCTGCGTTCCAGGTGTTACCAC  1147

seq1  CTTAAGCTCACGTTGGATGCTATTTATTCCTTGTGCTTGCTCTCTCCCAT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTCACGTTGGATGCTATTTATTCCTTGTGCTTGCTCTCTCCCAT  1197

seq1  GCCACATTCAAAGTCTTAGCTTGTGAATTC  1215
      ||||||||||||||||||||||||||||||
seq2  GCCACATTCAAAGTCTTAGCTTGTGAATTC  1227


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