BAC Information

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BAC

Clone NameB6Ng01-006M24
Chromosome9 (Build37)
Map Location 59,755,847 - 59,906,144
singlet/doubletdoublet
Overlap geneMyo9a, Nr2e3, EG665389, Thsd4
Upstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M24.bB6Ng01-006M24.g
ACCDH843566DH843567
length6041,068
definitionDH843566|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M24, 5' end.DH843567|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,755,847 - 59,756,450)(59,905,082 - 59,906,144)
sequence
gaattcaaatacagggagctaatagcttagaaccatggttctgcctcccc
aagctggagccatcattctctactgtagagtttccatcaggaaggagata
cagcatgtaacagggatattcagtataatttgctatttttaccatttttc
ttaggccttcaggaaagaaaagagacaatccgtggtgtgtactctgtaat
tgatcagctctcccgaactcatctcaatacactggaacgccttatctttc
atctagttaggtaacttattcaagacaggttctcactatgtatctttggc
tgtcttggaactcactatctagatcagtctgaacttgaaatcatagctat
ctttctgcctctacttctcaagtgctgggattaaaggcatgtaccaatat
gccttttgggggttatggtcaggattccatttaaatgaagaacttgaata
tataaagacagtgtcttgcctaggaatgtagtttagcagtggaatactta
cctagcatgcacaaagcccttggtttggtctttactatgcttacaaaaca
acacctctcacctccaatgaaacccctttctgccgtaaattggggggggg
gggg
gaattctctgctcagacatcaagttccagttttgaattcaggaagtggga
tcatgagccctgtggagccagcttgggcagtgggagaaagatttcaatca
agatcattctgttttgttccaaagctttatttttaatgcaaaataaaatt
tgtctaatagaaacatagacagttgatgggaaacaaagaagaaaaaattg
aataatgaaattggagggatgagattcaagttagacaagagtttccacaa
ttgaggttgaccgtatgatgaagcctgttattggaagcctgcctgccgtg
cagcctggtggtgctttaggcattgcgcttgaggaagggcctccgagaaa
cacacaaatgtgcctgtgctcgggtctccagaacaacagtcaccagtgga
gactcgggacctgagctcttatttcccatgaaactgggccaggaaaccgc
acttggggggcggggggtgactttgtcacatggtggtaggatctgcaatg
tagaacagactcggaggcaaaccttagttttaagtgaggtatttactgtg
gctccaaagagatttgggaaattcccagcatggggcatccatgaccctct
atagtccagggtaggagcctgggatataaaaacaactccactgtcccaat
tatataaatatcaaaccctgcttccttcctattcattttctcctgatcaa
ttacctcgaccaagtgaactattgagttgatctgtctttgtttactgtgt
ggcccccaacctccccctggaggatacattttatgagtagctgagatgca
aagctcttgcccagagtaggtgctgtggacttaactgttcaatgaaggca
tgcatgaacttttaagaatgtattatgtatgtgcatattgggtacatggg
catactacttgcatgtgcatgtggtgatcagcggggaacgtgagctattt
ttcttctcttcctcttcatgttaattactctttgagtctctacagaactg
tttctcacttggttgcctagagaactaggaaacttcaggacctttccgtg
ctaggacttctaggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59755847_59756450
seq2: B6Ng01-006M24.b_49_652

seq1  GAATTCAAATACAGGGAGCTAATAGCTTAGAACCATGGTTCTGCCTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACAGGGAGCTAATAGCTTAGAACCATGGTTCTGCCTCCCC  50

seq1  AAGCTGGAGCCATCATTCTCTACTGTAGAGTTTCCATCAGGAAGGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGCCATCATTCTCTACTGTAGAGTTTCCATCAGGAAGGAGATA  100

seq1  CAGCATGTAACAGGGATATTCAGTATAATTTGCTATTTTTACCATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTAACAGGGATATTCAGTATAATTTGCTATTTTTACCATTTTTC  150

seq1  TTAGGCCTTCAGGAAAGAAAAGAGACAATCCGTGGTGTGTACTCTGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTTCAGGAAAGAAAAGAGACAATCCGTGGTGTGTACTCTGTAAT  200

seq1  TGATCAGCTCTCCCGAACTCATCTCAATACACTGGAACGCCTTATCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGCTCTCCCGAACTCATCTCAATACACTGGAACGCCTTATCTTTC  250

seq1  ATCTAGTTAGGTAACTTATTCAAGACAGGTTCTCACTATGTATCTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTAGGTAACTTATTCAAGACAGGTTCTCACTATGTATCTTTGGC  300

seq1  TGTCTTGGAACTCACTATCTAGATCAGTCTGAACTTGAAATCATAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGAACTCACTATCTAGATCAGTCTGAACTTGAAATCATAGCTAT  350

seq1  CTTTCTGCCTCTACTTCTCAAGTGCTGGGATTAAAGGCATGTACCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCTCTACTTCTCAAGTGCTGGGATTAAAGGCATGTACCAATAT  400

seq1  GCCTTTTGGGGGTTATGGTCAGGATTCCATTTAAATGAAGAACTTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGGGGGTTATGGTCAGGATTCCATTTAAATGAAGAACTTGAATA  450

seq1  TATAAAGACAGTGTCTTGCCTAGGAATGTAGTTTAGCAGTGGAATACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACAGTGTCTTGCCTAGGAATGTAGTTTAGCAGTGGAATACTTA  500

seq1  CCTAGCATGCACAAAGCCCTTGGTTTGGTCTTTACTATGCTTACAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATGCACAAAGCCCTTGGTTTGGTCTTTACTATGCTTACAAAACA  550

seq1  ACACCTCTCACCTCCAATGAAACCCCTTTCTGCCGTAAATTGGGGGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTCACCTCCAATGAAACCCCTTTCTGCCGTAAATTGGGGGGGGG  600

seq1  GGGG  604
      ||||
seq2  GGGG  604

seq1: chr9_59905082_59906144
seq2: B6Ng01-006M24.g_68_1135 (reverse)

seq1  AATGCCTAG-AGTCCTAGCACGGGAAGGCTCCTGAGGTCTCCTAG-TCTC  48
      ||||||||| ||||||||||||| |||| |||||| || |||||| ||||
seq2  AATGCCTAGAAGTCCTAGCACGGAAAGG-TCCTGAAGTTTCCTAGTTCTC  49

seq1  TAGGCAACC-AGTGAGAAACAGTTCTGTAAGAGACTCAAAGAGTAATTAA  97
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TAGGCAACCAAGTGAGAAACAGTTCTGT-AGAGACTCAAAGAGTAATTAA  98

seq1  CATGGAGAGGAAGAGAAG-AAAATAGCTCACGTTACCCGCTGATCACCAC  146
      |||| ||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CATGAAGAGGAAGAGAAGAAAAATAGCTCACGTTCCCCGCTGATCACCAC  148

seq1  ATGCACATGCAAGTAGTATGCCCATGTACCC-ATATGCACATACAT-ATA  194
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  ATGCACATGCAAGTAGTATGCCCATGTACCCAATATGCACATACATAATA  198

seq1  CATTCTTAAAAGTTCATGCATGCCTTCATTGAACAGTTATGTCCACAGCA  244
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATTCTTAAAAGTTCATGCATGCCTTCATTGAACAGTTAAGTCCACAGCA  248

seq1  CCTACTCTGGGCAAGAGCTTTGCATCTCAGCTACTCATAAAATGTATCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTGGGCAAGAGCTTTGCATCTCAGCTACTCATAAAATGTATCCT  298

seq1  CCAGGGGGAGGTTGGGGGCCACACAGTAAAC-AAGACAGATCAACTCAAT  343
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGGGGGAGGTTGGGGGCCACACAGTAAACAAAGACAGATCAACTCAAT  348

seq1  AGTTCACTTGGTCGAGGTAATTGATCAGGAGAAAATGAATAGGAAGGAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTTGGTCGAGGTAATTGATCAGGAGAAAATGAATAGGAAGGAAG  398

seq1  CAGGGTTTGATATTTATATAATTGGGACAGTGGAGTTGTTTTTATATCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTGATATTTATATAATTGGGACAGTGGAGTTGTTTTTATATCCC  448

seq1  AGGCTCCTACCCTGGACTATAGAGGGTCATGGATGCCCCATGCTGGGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTACCCTGGACTATAGAGGGTCATGGATGCCCCATGCTGGGAAT  498

seq1  TTCCCAAATCTCTTTGGAGCCACAGTAAATACCTCACTTAAAACTAAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATCTCTTTGGAGCCACAGTAAATACCTCACTTAAAACTAAGGT  548

seq1  TTGCCTCCGAGTCTGTTCTACATTGCAGATCCTACCACCATGTGACAAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCGAGTCTGTTCTACATTGCAGATCCTACCACCATGTGACAAAG  598

seq1  TCACCCCCCGCCCCCCAAGTGCGGTTTCCTGGCCCAGTTTCATGGGAAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCGCCCCCCAAGTGCGGTTTCCTGGCCCAGTTTCATGGGAAAT  648

seq1  AAGAGCTCAGGTCCCGAGTCTCCACTGGTGACTGTTGTTCTGGAGACCCG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCAGGTCCCGAGTCTCCACTGGTGACTGTTGTTCTGGAGACCCG  698

seq1  AGCACAGGCACATTTGTGTGTTTCTCGGAGGCCCTTCCTCAAGCGCAATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCACATTTGTGTGTTTCTCGGAGGCCCTTCCTCAAGCGCAATG  748

seq1  CCTAAAGCACCACCAGGCTGCACGGCAGGCAGGCTTCCAATAACAGGCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCACCACCAGGCTGCACGGCAGGCAGGCTTCCAATAACAGGCTT  798

seq1  CATCATACGGTCAACCTCAATTGTGGAAACTCTTGTCTAACTTGAATCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACGGTCAACCTCAATTGTGGAAACTCTTGTCTAACTTGAATCTC  848

seq1  ATCCCTCCAATTTCATTATTCAATTTTTTCTTCTTTGTTTCCCATCAACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAATTTCATTATTCAATTTTTTCTTCTTTGTTTCCCATCAACT  898

seq1  GTCTATGTTTCTATTAGACAAATTTTATTTTGCATTAAAAATAAAGCTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTTCTATTAGACAAATTTTATTTTGCATTAAAAATAAAGCTTT  948

seq1  GGAACAAAACAGAATGATCTTGATTGAAATCTTTCTCCCACTGCCCAAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAACAGAATGATCTTGATTGAAATCTTTCTCCCACTGCCCAAGC  998

seq1  TGGCTCCACAGGGCTCATGATCCCACTTCCTGAATTCAAAACTGGAACTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCACAGGGCTCATGATCCCACTTCCTGAATTCAAAACTGGAACTT  1048

seq1  GATGTCTGAGCAGAGAATTC  1063
      ||||||||||||||||||||
seq2  GATGTCTGAGCAGAGAATTC  1068