BAC Information

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BAC

Clone NameB6Ng01-008C14
Chromosome9 (Build37)
Map Location 82,086,274 - 82,234,489
singlet/doubletdoublet
Overlap geneLOC100039085
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008C14.bB6Ng01-008C14.g
ACCDH844514DH844515
length9551,127
definitionDH844514|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C14, 5' end.DH844515|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,233,532 - 82,234,489)(82,086,274 - 82,087,409)
sequence
gaattcctcagtcctgtaaagtttacttgcagtcaattaaccaaatgtga
cagaggcagaagagagccagaacgaggtgtcagcaggtgccaggggggat
gataaaaggcagagttggctggataagctaaaaatggaaaagccgtgata
aagtaactccactatatcagagctttgaacagcctctcagaagccctctc
aaaatgaattgttggttcttgagtgtgaaggtgactgtatgttctgtcct
agtgggagggtgcctagactctgtgacaaagtaagagaagatctgcatca
gccagcacaggcatgggtatgagagacctagaaagcaggatagtagtaga
cagagaaacagactctgggttcacttcacagtcgaccagcttttattttt
cccagtggtatttacatattgcatagagttctacagcagagcttgatcaa
acatgacctgactgaccatcttctctggatccttccttcagcacgtccct
ctaagtaatagcttttatcccatctctgtgttcttttgtattacccagcc
cttgtgccttagagcatccctccaggccttctctaaaaggctacagttat
aggcctacatcttagtcaggatttgtgcttgagaaatgaaatgtccctca
tctggaccctgaacaaggatttggtcctccgatgctctccctatcaaccc
cagaagaacctgtcttcctatttataactattaccttttctccatgactg
tgaaactggctttatctccatggaataatgcttctttctggttccacaca
tatccatgttagaatgtgctaacaaagagccaatcactcgagaggtcact
aagccagaggaaatgtatgccccgcggggaaatccacattttggtgttga
acaagataagtgtctttttagtgtactctttacttcagaattccttttgg
atgtt
gaattcaccacaggaagtaaatcttgtcatttgaaattcaagttctcaaa
aaaatgagaaatagaaacaaatagtctttatctttgatatttttaatagc
tgttagggaccaatatcataactacctattgtctcatgattttgctaacc
ctaaataacagaagcatgtttaaaaattgataatttagaggaaaatctaa
atgaaatggataattttcctcaacacatacttcttgccacagttaaatca
agatcaggtaaacaatttaaatagacccacaacttctaatgaaatggaaa
tatgaaaagctcagggatggatagttttagcacaaaattctaccagattt
taaggaagaattaaagccaatactcctcaaattattccacaaaatagaaa
cagaaagaacactgaccaattctttttatgagaaacaattacccctatac
ccaaatggcacaaagactcaagaaagaaagaaaattattgatcagtttct
ctttatgaatatagatttgaactgatagttaagtacttctagtgaagata
aggcactttaaaatcctttccctgaaaaatatttctaggctcactgcttt
caaagagcatcagagctgtcatagctctgaggctgtattctcaccgagtg
gagcagtacagtaattacaccattggcatgtgcagaatgaatgctgccaa
gcttcaaatgtggaaaggatgctccctactgagagtatattagtcaattc
tgatagagacggtgggtcacccagagttaactgttacaatagtcagtgtg
agcagctgtaataagatatcataggcaacaaagcttataaacaatagaag
tacattttcttctaggtttgaaggctgacaaatccaatattaaggtgctg
gtaaattggtgtccactgaaattatttctcacatatgattgtctacttga
gtaatctcatatatcaaaggagtgagaggtttctactttctcataggacg
ctactgcatacaatgttttctttcttttgatctaaggattctaaaagctc
tgacttcctcaagcatttataccccgtaaatcttaggattaacttatgaa
tttgtgatagcattacatcaagtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82233532_82234489
seq2: B6Ng01-008C14.b_47_1001 (reverse)

seq1  AACATCCAAAAGAGAATTCTGGAAGTAAAAGAGTACACTAAAAAGACACT  50
      |||||||||||| ||||||| ||||| |||||||||||||||||||||||
seq2  AACATCCAAAAG-GAATTCT-GAAGT-AAAGAGTACACTAAAAAGACACT  47

seq1  TATCTTGTTCAACACAAAAATTGTGGATTTCCCCGCGGGGCATACATTTC  100
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  TATCTTGTTCAACACCAAAA-TGTGGATTTCCCCGCGGGGCATACATTTC  96

seq1  CTCTGGCTTAGTGACCTCTCGAGTGATTGGCTCTTTGTTAGCACCTTCTA  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGGCTTAGTGACCTCTCGAGTGATTGGCTCTTTGTTAGCACATTCTA  146

seq1  ACATGGATATGTGTGGAACCAGAAAGAAGCATTATTCCATGGAGATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATATGTGTGGAACCAGAAAGAAGCATTATTCCATGGAGATAAAG  196

seq1  CCAGTTTCACAGTCATGGAGAAAAGGTAATAGTTATAAATAGGAAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCACAGTCATGGAGAAAAGGTAATAGTTATAAATAGGAAGACAG  246

seq1  GTTCTTCTGGGGTTGATAGGGAGAGCATCGGAGGACCAAATCCTTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTGGGGTTGATAGGGAGAGCATCGGAGGACCAAATCCTTGTTCA  296

seq1  GGGTCCAGATGAGGGACATTTCATTTCTCAAGCACAAATCCTGACTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGATGAGGGACATTTCATTTCTCAAGCACAAATCCTGACTAAGA  346

seq1  TGTAGGCCTATAACTGTAGCC-TTTAGAGAAGGCCTGGAGGGATGCTCTA  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTAGGCCTATAACTGTAGCCTTTTAGAGAAGGCCTGGAGGGATGCTCTA  396

seq1  AGGCACAAGGGCTGGGTAATACAAAAGAACACAGAGATGGGATAAAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAGGGCTGGGTAATACAAAAGAACACAGAGATGGGATAAAAGCT  446

seq1  ATTACTTAGAGGGACGTGCTGAAGGAAGGATCCAGAGAAGATGGTCAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAGAGGGACGTGCTGAAGGAAGGATCCAGAGAAGATGGTCAGTC  496

seq1  AGGTCATGTTTGATCAAGCTCTGCTGTAGAACTCTATGCAATATGTAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGTTTGATCAAGCTCTGCTGTAGAACTCTATGCAATATGTAAAT  546

seq1  ACCACTGGGAAAAATAAAAGCTGGTCGACTGTGAAGTGAACCCAGAGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGGAAAAATAAAAGCTGGTCGACTGTGAAGTGAACCCAGAGTCT  596

seq1  GTTTCTCTGTCTACTACTATCCTGCTTTCTAGGTCTCTCATACCCATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTCTACTACTATCCTGCTTTCTAGGTCTCTCATACCCATGCC  646

seq1  TGTGCTGGCTGATGCAGATCTTCTCTTACTTTGTCACAGAGTCTAGGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGCTGATGCAGATCTTCTCTTACTTTGTCACAGAGTCTAGGCAC  696

seq1  CCTCCCACTAGGACAGAACATACAGTCACCTTCACACTCAAGAACCAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTAGGACAGAACATACAGTCACCTTCACACTCAAGAACCAACA  746

seq1  ATTCATTTTGAGAGGGCTTCTGAGAGGCTGTTCAAAGCTCTGATATAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTGAGAGGGCTTCTGAGAGGCTGTTCAAAGCTCTGATATAGTG  796

seq1  GAGTTACTTTATCACGGCTTTTCCATTTTTAGCTTATCCAGCCAACTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTTATCACGGCTTTTCCATTTTTAGCTTATCCAGCCAACTCTG  846

seq1  CCTTTTATCATCCCCCCTGGCACCTGCTGACACCTCGTTCTGGCTCTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCATCCCCCCTGGCACCTGCTGACACCTCGTTCTGGCTCTCTT  896

seq1  CTGCCTCTGTCACATTTGGTTAATTGACTGCAAGTAAACTTTACAGGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGTCACATTTGGTTAATTGACTGCAAGTAAACTTTACAGGACT  946

seq1  GAGGAATTC  958
      |||||||||
seq2  GAGGAATTC  955

seq1: chr9_82086274_82087409
seq2: B6Ng01-008C14.g_70_1196

seq1  GAATTCACCACAGGAAGTAAATCTTGTCATTTGAAATTCAAGTTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAGGAAGTAAATCTTGTCATTTGAAATTCAAGTTCTCAAA  50

seq1  AAAATGAGAAATAGAAACAAATAGTCTTTATCTTTGATATTTTTAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAAATAGAAACAAATAGTCTTTATCTTTGATATTTTTAATAGC  100

seq1  TGTTAGGGACCAATATCATAACTACCTATTGTCTCATGATTTTGCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGACCAATATCATAACTACCTATTGTCTCATGATTTTGCTAACC  150

seq1  CTAAATAACAGAAGCATGTTTAAAAATTGATAATTTAGAGGAAAATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAACAGAAGCATGTTTAAAAATTGATAATTTAGAGGAAAATCTAA  200

seq1  ATGAAATGGATAATTTTCCTCAACACATACTTCTTGCCACAGTTAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGATAATTTTCCTCAACACATACTTCTTGCCACAGTTAAATCA  250

seq1  AGATCAGGTAAACAATTTAAATAGACCCACAACTTCTAATGAAATGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGTAAACAATTTAAATAGACCCACAACTTCTAATGAAATGGAAA  300

seq1  TATGAAAAGCTCAGGGATGGATAGTTTTAGCACAAAATTCTACCAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGCTCAGGGATGGATAGTTTTAGCACAAAATTCTACCAGATTT  350

seq1  TAAGGAAGAATTAAAGCCAATACTCCTCAAATTATTCCACAAAATAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAATTAAAGCCAATACTCCTCAAATTATTCCACAAAATAGAAA  400

seq1  CAGAAAGAACACTGACCAATTCTTTTTATGAGAAACAATTACCCCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAACACTGACCAATTCTTTTTATGAGAAACAATTACCCCTATAC  450

seq1  CCAAATGGCACAAAGACTCAAGAAAGAAAGAAAATTATTGATCAGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGCACAAAGACTCAAGAAAGAAAGAAAATTATTGATCAGTTTCT  500

seq1  CTTTATGAATATAGATTTGAACTGATAGTTAAGTACTTCTAGTGAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAATATAGATTTGAACTGATAGTTAAGTACTTCTAGTGAAGATA  550

seq1  AGGCACTTTAAAATCCTTTCCCTGAAAAATATTTCTAGGCTCACTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTTAAAATCCTTTCCCTGAAAAATATTTCTAGGCTCACTGCTTT  600

seq1  CAAAGAGCATCAGAGCTGTCATAGCTCTGAGGCTGTATTCTCACCGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCATCAGAGCTGTCATAGCTCTGAGGCTGTATTCTCACCGAGTG  650

seq1  GAGCAGTACAGTAATTACACCATTGGCATGTGCAGAATGAATGCTGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTACAGTAATTACACCATTGGCATGTGCAGAATGAATGCTGCCAA  700

seq1  GCTTCAAATGTGGAAAGGATGCTCCCTACTGAGAGTATATTAGTCAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAATGTGGAAAGGATGCTCCCTACTGAGAGTATATTAGTCAATTC  750

seq1  TGATAGAGACGGTGGGTCACCCAGAGTTAACTGTTACAATAGTCAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGACGGTGGGTCACCCAGAGTTAACTGTTACAATAGTCAGTGTG  800

seq1  AGCAGCTGTAATAAGATATCATAGGCAACAAAGCTTATAAACAATAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTAATAAGATATCATAGGCAACAAAGCTTATAAACAATAGAAG  850

seq1  TACA-TTTCTTCTAGGTTTGAAGGCTGACAAATCCAATATTAAGGTGCTG  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCTTCTAGGTTTGAAGGCTGACAAATCCAATATTAAGGTGCTG  900

seq1  GTAAATTGGGTGTCCACTGAAATTATTTCTCACATATGATTGTCTACTTT  949
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAATT-GGTGTCCACTGAAATTATTTCTCACATATGATTGTCTAC-TT  948

seq1  GAGTAATCTCATATTATCAAAGGAGTGAGAGGTTTCTACTTTCTCATAGG  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTAATCTCATA-TATCAAAGGAGTGAGAGGTTTCTACTTTCTCATAGG  997

seq1  AACGCTAACTGGCATACAATG-TTTCTTCCTTTTGACCTAAAGATTCCTA  1048
       ||||| ||| |||||||||| |||||| ||||||| |||| |||| |||
seq2  -ACGCT-ACT-GCATACAATGTTTTCTTTCTTTTGATCTAAGGATT-CTA  1043

seq1  AAAGCCCTGACTTCACCAAGCATTATAACACCATAAATCTTAAGATTTAA  1098
      ||||| ||||||||  ||||||||   || || ||||||||| ||||  |
seq2  AAAGCTCTGACTTCCTCAAGCATTTATACCCCGTAAATCTTAGGATT--A  1091

seq1  ACATATGAATTTGTGAATAGCATTAACAACAAGTCTGC  1136
      || |||||||||||| |||||||| ||| |||||||||
seq2  ACTTATGAATTTGTG-ATAGCATT-ACATCAAGTCTGC  1127