BAC Information

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BAC

Clone NameB6Ng01-008M23
Chromosome9 (Build37)
Map Location 56,325,590 - 56,427,673
singlet/doubletdoublet
Overlap geneHmg20a, LOC100039549, LOC640537
Upstream geneEtfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, LOC100039535
Downstream geneLingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008M23.bB6Ng01-008M23.g
ACCDH844941DH844942
length1,1441,139
definitionDH844941|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M23, 5' end.DH844942|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,426,527 - 56,427,673)(56,325,590 - 56,326,739)
sequence
gaattctaccatttgggtcctggtctttatagaacttagggctcataaca
tttgttccctaggatacaggcatcagaactggggctctgcgatcatcatc
ttgaaagtacaaggtcatccccctgtgcacaaaaaaggtaaatcctcctt
ctggatgcttccagtgcccctcacagctggctgagcagcccaccccttcc
tcttcacagtctaccatcctttcagcacagtgatggaaatagtaacagaa
aaggtccgtctttgttgagtgtgcaccatgtgccaggtgccattataaac
atttagcatcttcaccacaaccctctaggtcagcatctattattactccc
atttcacaactggaccagagagcagagatgccaagtcagttactcatggc
tgcccatctgatagatgaggtggtagagccctacccagttatacctgtta
ccagggcacaaatctataagagacccactcagctcagactcccttctcct
ccaggaggcccatcttgactgtaaccataaagccactggccaatttaaaa
gtctcattcatagactgctgtagcttccaaggctgctttcttcttgaatt
ctacagcacaagtctagtagcttgatctgaagtttgttcatgaggtctgg
aaagagttctctagaaataagatgagtcttccttcctctatcaccctcta
tgggccacttggatgtagagcctgagagagggctacagaggagtctccgt
tgcccaggcctgaacagcttttccagggctcttcgtgtcttaatactcct
tgcctcctctagtctaagttctatttgtatagtaatagaagacaagagac
ttccttgaccttagaccaccctcttcttgcaacatctcctgctcctgggg
tattcaactctttttctctgtccctgggaacctagggaccttccagaagt
acttttcctgagcttaagtggtataagtaggagaccattggggataattc
agcccagtctttttagagtacagatgaagacaaactcaggtagaaggtag
gtttgaacctttgtcctggattctctctgttgcacttggagaactctgca
agccttaactcctctataggccacagaccttttgtaattcctgg
gaattcaaggctaatccaagcatcttagagccttcaactaaaggaaaata
caaaggggtttgggtggtagcacatagcagatcagttgcctgccttgccc
gggtctgggttcaatgtctaattctgcaaaaagaaagtgaaaagagacta
tatgaagcaaggtgttgagacctggagtagtaacgtaaattgaccagtgc
cacccacttagctactgtcaagttgtggagagaaattcaggctgctggct
ttgtgttctaggttgaagagcatgcaccctaaagtctatgtctgcagtct
cagagcaaagtctttgtagctgtaactagctaaggagaagtaagactggt
tcagatggccctgttccaatgactggtattcataggagagaaagacaggc
tctggtggagagaggcatataaagagggaggtagaaataggaattatgtt
tctgggaggccaggaacagctgaaccaccagaaactcaatggggaaggaa
aagaataccagaatagcagaatctttgtggttcttgtgtctagcacagtg
aggagaaactgtcccaagatttgttgtcctaaggggttatgagccgaaag
gattctagaaaccaccccccaccaaagcagctacgttttcatttgattgt
atactgagttcacagaagagtgttttgaaaagtggttcaatattaagaaa
ttaagaaatctatcaaagtaatgtattccattgagctaaatgaaagtcat
gaataaaaatgaggggaaaaaaatcatttgccaaaattcttcaattcaca
taagaatgttatttaagaaaaagattttattgctttactgattgttttaa
gtagagttctagcaatttttaccactataggggataaagcaagaatcatc
tgatctctcttctctcagacagaaactaactctgttgtcacagtgaagaa
agcttttgtagagagattggagggggaataagcacaagctccgccatgct
ctgggtaaaaggccactgaggcagagggaggtcaggcctgaactgtcagc
tctgcataaaggtctgcttccggcatctctcaagaatctaatcatatggc
taagtctttatggactgcattctttaaatggattccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56426527_56427673
seq2: B6Ng01-008M23.b_46_1189 (reverse)

seq1  CCAGAAATT-CAAAAGTGTCTGTGGCCCTATGAGAGATTTAAAGCCTGGC  49
      |||| |||| |||||| |||||||| ||||| ||||   | ||| || ||
seq2  CCAGGAATTACAAAAG-GTCTGTGG-CCTAT-AGAGGAGTTAAGGCTTGC  47

seq1  AGAG-TCTCCAAGTGCAAC-GAGGAGATTCAGGACCAAGGGTTCAAACCT  97
      |||| |||||||||||||| |||   || ||||| ||| |||||||||||
seq2  AGAGTTCTCCAAGTGCAACAGAGAGAATCCAGGA-CAAAGGTTCAAACCT  96

seq1  TACCTCTACCCTGAGTTTGTCTTCATCTGTACTCT-AAGAGACTGGGCCT  146
        | |||| |||||||||||||||||||||||||| || |||||||| ||
seq2  ACCTTCTA-CCTGAGTTTGTCTTCATCTGTACTCTAAAAAGACTGGG-CT  144

seq1  GAA-TATCCCCAATGGTCTCCTACTTATACCCAACTTAGGCTCAGGAAAA  195
      ||| |||||||||||||||||||||||||||  ||||| |||||||||||
seq2  GAATTATCCCCAATGGTCTCCTACTTATACC--ACTTAAGCTCAGGAAAA  192

seq1  GTACTTCTGGAAGGTCCCTAGGTTCCCAGGGACAGAGAAAAAAGAGTTGA  245
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTACTTCTGGAAGGTCCCTAGGTTCCCAGGGACAGAG-AAAAAGAGTTGA  241

seq1  ATA-CCCAGGAGCAGGAGATGTTGCAAGAAGAGGGTGGTCTAAGGTCAAG  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAGGAGCAGGAGATGTTGCAAGAAGAGGGTGGTCTAAGGTCAAG  291

seq1  GAAGTCTCTTGTCTTCTATTACTATACAAATAGAACTTAGACTAGAGGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTTGTCTTCTATTACTATACAAATAGAACTTAGACTAGAGGAG  341

seq1  GCAAGGAGTATTAAGACACGAAGAGCCCTGGAAAAGCTGTTCAGGCCTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGTATTAAGACACGAAGAGCCCTGGAAAAGCTGTTCAGGCCTGG  391

seq1  GCAACGGAGACTCCTCTGTAGCCCTCTCTCAGGCTCTACATCCAAGTGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGAGACTCCTCTGTAGCCCTCTCTCAGGCTCTACATCCAAGTGGC  441

seq1  CCATAGAGGGTGATAGAGGAAGGAAGACTCATCTTATTTCTAGAGAACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGGGTGATAGAGGAAGGAAGACTCATCTTATTTCTAGAGAACTC  491

seq1  TTTCCAGACCTCATGAACAAACTTCAGATCAAGCTACTAGACTTGTGCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGACCTCATGAACAAACTTCAGATCAAGCTACTAGACTTGTGCTG  541

seq1  TAGAATTCAAGAAGAAAGCAGCCTTGGAAGCTACAGCAGTCTATGAATGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCAAGAAGAAAGCAGCCTTGGAAGCTACAGCAGTCTATGAATGA  591

seq1  GACTTTTAAATTGGCCAGTGGCTTTATGGTTACAGTCAAGATGGGCCTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAAATTGGCCAGTGGCTTTATGGTTACAGTCAAGATGGGCCTCC  641

seq1  TGGAGGAGAAGGGAGTCTGAGCTGAGTGGGTCTCTTATAGATTTGTGCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGAAGGGAGTCTGAGCTGAGTGGGTCTCTTATAGATTTGTGCCC  691

seq1  TGGTAACAGGTATAACTGGGTAGGGCTCTACCACCTCATCTATCAGATGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAGGTATAACTGGGTAGGGCTCTACCACCTCATCTATCAGATGG  741

seq1  GCAGCCATGAGTAACTGACTTGGCATCTCTGCTCTCTGGTCCAGTTGTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATGAGTAACTGACTTGGCATCTCTGCTCTCTGGTCCAGTTGTGA  791

seq1  AATGGGAGTAATAATAGATGCTGACCTAGAGGGTTGTGGTGAAGATGCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGTAATAATAGATGCTGACCTAGAGGGTTGTGGTGAAGATGCTA  841

seq1  AATGTTTATAATGGCACCTGGCACATGGTGCACACTCAACAAAGACGGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATAATGGCACCTGGCACATGGTGCACACTCAACAAAGACGGAC  891

seq1  CTTTTCTGTTACTATTTCCATCACTGTGCTGAAAGGATGGTAGACTGTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTTACTATTTCCATCACTGTGCTGAAAGGATGGTAGACTGTGA  941

seq1  AGAGGAAGGGGTGGGCTGCTCAGCCAGCTGTGAGGGGCACTGGAAGCATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGGGTGGGCTGCTCAGCCAGCTGTGAGGGGCACTGGAAGCATC  991

seq1  CAGAAGGAGGATTTACCTTTTTTGTGCACAGGGGGATGACCTTGTACTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAGGATTTACCTTTTTTGTGCACAGGGGGATGACCTTGTACTTT  1041

seq1  CAAGATGATGATCGCAGAGCCCCAGTTCTGATGCCTGTATCCTAGGGAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGATGATCGCAGAGCCCCAGTTCTGATGCCTGTATCCTAGGGAAC  1091

seq1  AAATGTTATGAGCCCTAAGTTCTATAAAGACCAGGACCCAAATGGTAGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATGAGCCCTAAGTTCTATAAAGACCAGGACCCAAATGGTAGAA  1141

seq1  TTC  1147
      |||
seq2  TTC  1144

seq1: chr9_56325590_56326739
seq2: B6Ng01-008M23.g_65_1203

seq1  GAATTCAAGGCTAATCCAAGCATCTTAGAGCCTTCAACTAAAGGAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAATCCAAGCATCTTAGAGCCTTCAACTAAAGGAAAATA  50

seq1  CAAAGGGGTTTGGGTGGTAGCACATAGCAGATCAGTTGCCTGCCTTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGTTTGGGTGGTAGCACATAGCAGATCAGTTGCCTGCCTTGCCC  100

seq1  GGGTCTGGGTTCAATGTCTAATTCTGCAAAAAGAAAGTGAAAAGAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGGTTCAATGTCTAATTCTGCAAAAAGAAAGTGAAAAGAGACTA  150

seq1  TATGAAGCAAGGTGTTGAGACCTGGAGTAGTAACGTAAATTGACCAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCAAGGTGTTGAGACCTGGAGTAGTAACGTAAATTGACCAGTGC  200

seq1  CACCCACTTAGCTACTGTCAAGTTGTGGAGAGAAATTCAGGCTGCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTAGCTACTGTCAAGTTGTGGAGAGAAATTCAGGCTGCTGGCT  250

seq1  TTGTGTTCTAGGTTGAAGAGCATGCACCCTAAAGTCTATGTCTGCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTAGGTTGAAGAGCATGCACCCTAAAGTCTATGTCTGCAGTCT  300

seq1  CAGAGCAAAGTCTTTGTAGCTGTAACTAGCTAAGGAGAAGTAAGACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAAGTCTTTGTAGCTGTAACTAGCTAAGGAGAAGTAAGACTGGT  350

seq1  TCAGATGGCCCTGTTCCAATGACTGGTATTCATAGGAGAGAAAGACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGCCCTGTTCCAATGACTGGTATTCATAGGAGAGAAAGACAGGC  400

seq1  TCTGGTGGAGAGAGGCATATAAAGAGGGAGGTAGAAATAGGAATTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAGAGAGGCATATAAAGAGGGAGGTAGAAATAGGAATTATGTT  450

seq1  TCTGGGAGGCCAGGAACAGCTGAACCACCAGAAACTCAATGGGGAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGCCAGGAACAGCTGAACCACCAGAAACTCAATGGGGAAGGAA  500

seq1  AAGAATACCAGAATAGCAGAATCTTTGTGGTTCTTGTGTCTAGCACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACCAGAATAGCAGAATCTTTGTGGTTCTTGTGTCTAGCACAGTG  550

seq1  AGGAGAAACTGTCCCAAGATTTGTTGTCCTAAGGGGTTATGAGCCGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACTGTCCCAAGATTTGTTGTCCTAAGGGGTTATGAGCCGAAAG  600

seq1  GATTCTAGAAACCACCCCCCACCAAAGCAGCTACGTTTTCATTTGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGAAACCACCCCCCACCAAAGCAGCTACGTTTTCATTTGATTGT  650

seq1  ATACTGAGTTCACAGAAGAGTGTTTTGAAAAGTGGTTCAATATTAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGTTCACAGAAGAGTGTTTTGAAAAGTGGTTCAATATTAAGAAA  700

seq1  TTAAGAAATCTATCAAAGTAATGTATTCCATTGAGCTAAATGAAAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATCTATCAAAGTAATGTATTCCATTGAGCTAAATGAAAGTCAT  750

seq1  GAATAAAAATGAGGGGAAAAAAATCATTTGCCAAAATTCTTCAATTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAATGAGGGGAAAAAAATCATTTGCCAAAATTCTTCAATTCACA  800

seq1  TAAGAATGTTATTTAAGAAAAAGATTTTATTGCTTTACTGATTGTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTTATTTAAGAAAAAGATTTTATTGCTTTACTGATTGTTTTAA  850

seq1  GTAGAGTTCTAGCAAATTTTACCACTATAGGGAATAAAGCAAGAACCATC  900
      ||||||||||||||| |||||||||||||||| |||||||||||| ||||
seq2  GTAGAGTTCTAGCAATTTTTACCACTATAGGGGATAAAGCAAGAATCATC  900

seq1  TGATCTCTCTCCTCTCAGACAGAAACTAACTCTGTTGTCACAGTGAAGAA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTCTTCTCTCAGACAGAAACTAACTCTGTTGTCACAGTGAAGAA  950

seq1  AGCTTTTGTTAGAGAGATTGGAGGGGAATTAAGCACAAGCT-CGCCATGC  999
      |||||||| ||||||||||||||||| | |||||||||||| ||||||||
seq2  AGCTTTTG-TAGAGAGATTGGAGGGGGAATAAGCACAAGCTCCGCCATGC  999

seq1  CCTGGGTAAAAGGCCACTGAGGCAGAGGGAGGCCAGGGCCTGGACTGCCA  1049
       ||||||||||||||||||||||||||||||| || |||||| |||| ||
seq2  TCTGGGTAAAAGGCCACTGAGGCAGAGGGAGGTCA-GGCCTGAACTGTCA  1048

seq1  GGCTCTGCATTAAAGGCCCTGCTTCCCGGCA--TCTCAAAGATCTATATT  1097
       |||||||| ||||||  |||||| ||||||  ||||||  |||||    
seq2  -GCTCTGCA-TAAAGG-TCTGCTT-CCGGCATCTCTCAAGAATCTA----  1090

seq1  TCTTTTATGTCTTAAGCTCTTTATGACTTGCATTCTTTAAAATGGATTCC  1147
        |  |||| | |||| ||||||||   |||||||||| |||||||||||
seq2  -ATCATATGGC-TAAG-TCTTTATGGACTGCATTCTTT-AAATGGATTCC  1136

seq1  AGA  1150
      |||
seq2  AGA  1139