BAC Information

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BAC

Clone NameB6Ng01-008N07
Chromosome9 (Build37)
Map Location 62,986,887 - 63,024,588
singlet/doubletdoublet
Overlap geneLbxcor1, Map2k5
Upstream geneSpesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1
Downstream gene2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N07.bB6Ng01-008N07.g
ACCDH844955DH844956
length1,0831,118
definitionDH844955|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N07, 5' end.DH844956|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,986,887 - 62,987,967)(63,023,458 - 63,024,588)
sequence
gaattctcaatggagcagaagggaggtagaggggcaagagtgaggctctg
gccagtcagaactatttcttaggtccattagccccattttacagacgggg
aaaccgaggcacaaagaggtctaattgtcccagtctagggttaggccaga
aagcaaattttcggatgctcagagctcaatgggctttttcgtcctacatc
aaagttataaaatttcaccccagttcccttctgatccacgtggacccagg
ccgcctttctttcaaacatctccataactacacccacctacacacccacc
caccattcaccatccattcacccacccacccaatagtacaaccagccttg
actctctctcagtctgtctgtctgtctgtctgtctgtctgtctcttatct
ttgtttctgggttcacaccttttaatttctgctggatggcatagcgggcc
ttcctctcctggtccagttcgttacacaaggtatctggaagacatggaag
ttctgtgagaccaccctctaggcagatggctgaggtcacagcctgggcac
aacctctcccctacagaaaccaccccagaaactaaggaggggacacctac
acttcaaactgcaggctgggaagctgggggaggaaatggcctgggatggc
gcttaaaggcagacggatctaaccaaaattaaagcaaacttaggcattac
ttcccaggtaattttacgcctcgatttttaatttagaaaccgtggaaatt
gcagcgctaagaagttcaatcactccacgtaatgatgcctgcaagccgtt
tgctgggctcgcttgccattctgaggctaatcagactatacaaaggatat
taaataaaaaaataatggttaaattaccttcaatttaaatccaaatgact
gagccaacattgcggctcctgccagacaagaggagttacggccgttgcgc
gcgcttccctgaaccgcgtctaacctctgacaaatatgcagctgttgcac
catttcttcccgaaaagccaattcctcttcattggttcctgaaaaattat
ctgtgcaaattgatttaagtgagagctggtaag
gaattccaaagctgtacccttcactccctcatctaatgaggttatgacca
aatgctcattataattgctttagactccttttaattttcaagcttattaa
tcataagaagagttatttaaaattgcataaattaatcttagattaaaagc
ccatcaaagcctggaaacaattaagaataagtaggatttccctggggcag
caagttttattttaatattgtagtcaggtggatatcagaaccttgaagta
tggtagtgattaatgtatgcaaaatttaaatgagattttttttaaatggc
aagtctaaatcacttattgacctaactgtaggctttagccgcactggctg
tcatatggtgcaactgtttactaatcaacattttaattaccgcgtgtgct
ggcagaccctaggacaaacaaaacccagcatctcagattgttgccgccaa
gtctcttgcccaaagatatcaggaagatgagaagatggagggatgagacc
acttaaggccatagcatagcaggggctccagcaacactgtcctgcctaag
gttgtactgggcaccctaaacactctatacagtgtgtagtcctgggttcc
taggtcttctccttgttcatgttaaggaggtaggtgtttccagaaagaaa
tctgattgcacttcaggcaaagtcagagagctcagtgatccaggaagtgc
cgaggaagcttcgtgcgtcaggaagaattcctctgtggtataaatgttgg
gtctctgtgggaaggacagtcaataggagggtcacccagaaggagctgtg
taaagaatccttgagatcagctcatcttgatgtcttgtgaagctttgtca
cggtcaggcagaaagagaaagctctaggttccaggtgcgatttcaaggct
gtctggtaagttgtggctaacccctcactagtacacgagaaagccagtct
cctcttcctccggcttcatggacactcagcattccataaggtgatatgct
atggttagttaacaaactctgtctcaaaactgtcagctattctggttttt
tgctattagaccatgactggtgaggtgactcaatgggtcaaaggattgtt
gtcaggcagacaactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_62986887_62987967
seq2: B6Ng01-008N07.b_48_1130

seq1  GAATTCTCAATGGAGCAGAAGGGAGGTAGAGGGGCAAGAGTGAGGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGGAGCAGAAGGGAGGTAGAGGGGCAAGAGTGAGGCTCTG  50

seq1  GCCAGTCAGAACTATTTCTTAGGTCCATTAGCCCCATTTTACAGACGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCAGAACTATTTCTTAGGTCCATTAGCCCCATTTTACAGACGGGG  100

seq1  AAACCGAGGCACAAAGAGGTCTAATTGTCCCAGTCTAGGGTTAGGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGAGGCACAAAGAGGTCTAATTGTCCCAGTCTAGGGTTAGGCCAGA  150

seq1  AAGCAAATTTTCGGATGCTCAGAGCTCAATGGGCTTTTTCGTCCTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTTTCGGATGCTCAGAGCTCAATGGGCTTTTTCGTCCTACATC  200

seq1  AAAGTTATAAAATTTCACCCCAGTTCCCTTCTGATCCACGTGGACCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATAAAATTTCACCCCAGTTCCCTTCTGATCCACGTGGACCCAGG  250

seq1  CCGCCTTTCTTTCAAACATCTCCATAACTACACCCACCTACACACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTTCTTTCAAACATCTCCATAACTACACCCACCTACACACCCACC  300

seq1  CACCATTCACCATCCATTCACCCACCCACCCAATAGTACAACCAGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCACCATCCATTCACCCACCCACCCAATAGTACAACCAGCCTTG  350

seq1  ACTCTCTCTCAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTCAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTTATCT  400

seq1  TTGTTTCTGGGTTCACACCTTTTAATTTCTGCTGGATGGCATAGCGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGGGTTCACACCTTTTAATTTCTGCTGGATGGCATAGCGGGCC  450

seq1  TTCCTCTCCTGGTCCAGTTCGTTACACAAGGTATCTGGAAGACATGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCTGGTCCAGTTCGTTACACAAGGTATCTGGAAGACATGGAAG  500

seq1  TTCTGTGAGACCACCCTCTAGGCAGATGGCTGAGGTCACAGCCTGGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGACCACCCTCTAGGCAGATGGCTGAGGTCACAGCCTGGGCAC  550

seq1  AACCTCTCCCCTACAGAAACCACCCCAGAAACTAAGGAGGGGACACCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCCCCTACAGAAACCACCCCAGAAACTAAGGAGGGGACACCTAC  600

seq1  ACTTCAAACTGCAGGCTGGGAAGCTGGGGGAGGAAATGGCCTGGGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACTGCAGGCTGGGAAGCTGGGGGAGGAAATGGCCTGGGATGGC  650

seq1  GCTTAAAGGCAGACGGATCTAACCAAAATTAAAGCAAACTTAGGCATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGCAGACGGATCTAACCAAAATTAAAGCAAACTTAGGCATTAC  700

seq1  TTCCCAGGTAATTTTACGCCTCGATTTTTAATTTAGAAACCGTGGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTAATTTTACGCCTCGATTTTTAATTTAGAAACCGTGGAAATT  750

seq1  GCAGCGCTAAGAAGTTCAATCACTCCACGTAATGATGCCTGCAAGCCGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCTAAGAAGTTCAATCACTCCACGTAATGATGCCTGCAAGCCGTT  800

seq1  TGCTGGGCTCGCTTGCCATTCTGAGGCTAATCAGACTATACAAAGGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCTCGCTTGCCATTCTGAGGCTAATCAGACTATACAAAGGATAT  850

seq1  TAAATAAAAAAAATAATTGTTAAATTACCTTCAATTTAAATCCAAATGAC  900
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAT-AAAAAAATAATGGTTAAATTACCTTCAATTTAAATCCAAATGAC  899

seq1  TGAGCCAACATTGCGGCTCCTGCCAGAC-AGAGGCAGTTACGGCCG-TGC  948
      |||||||||||||||||||||||||||| ||||| ||||||||||| |||
seq2  TGAGCCAACATTGCGGCTCCTGCCAGACAAGAGG-AGTTACGGCCGTTGC  948

seq1  GCGCGCTCACCTGACTCGCGTCTTACCTCTGAC-AATTTGCAGCTGTTGC  997
      |||||||  |||||  ||||||| ||||||||| ||| ||||||||||||
seq2  GCGCGCTTCCCTGAACCGCGTCTAACCTCTGACAAATATGCAGCTGTTGC  998

seq1  ACCATTTCTTCCCGATAAGCCAATTCCCTCTTCATTTGATCCTG-AAAAT  1046
      ||||||||||||||| ||||||||| |||||||||| | ||||| |||||
seq2  ACCATTTCTTCCCGAAAAGCCAATT-CCTCTTCATTGGTTCCTGAAAAAT  1047

seq1  TATCTGTGCAAATTGA-TTAAGTGAGAGCTGTTAAG  1081
      |||||||||||||||| |||||||||||||| ||||
seq2  TATCTGTGCAAATTGATTTAAGTGAGAGCTGGTAAG  1083

seq1: chr9_63023458_63024588
seq2: B6Ng01-008N07.g_69_1186 (reverse)

seq1  CTCAGGTTGTCTGGCCTGACAACAGTCACTTGTACCCACTGAGTCACCTC  50
      |||| ||||||| ||||||||||| || |||  ||||| |||||||||||
seq2  CTCA-GTTGTCT-GCCTGACAACAATC-CTTTGACCCATTGAGTCACCTC  47

seq1  ACCAGTCATGGTCTTAATAGCAAAAAACACAGAAATAGCTGACATGTTCT  100
      ||||||||||||| |||||||||||||| ||| ||||||||||| ||| |
seq2  ACCAGTCATGGTC-TAATAGCAAAAAAC-CAG-AATAGCTGACA-GTTTT  93

seq1  GAGACAGAGTTCTGGTTAACTAAACATAGCATATCCACCTTATGGAATGC  150
      ||||||||||  | ||||||||| |||||||||| |||||||||||||||
seq2  GAGACAGAGT--TTGTTAACTAACCATAGCATAT-CACCTTATGGAATGC  140

seq1  TGAGTGTCCATGAAGCCGGAGGAGGAGGAGACTGGC-TTCTCGGTGTACT  199
      ||||||||||||||||||||||| |||||||||||| ||||| |||||||
seq2  TGAGTGTCCATGAAGCCGGAGGAAGAGGAGACTGGCTTTCTC-GTGTACT  189

seq1  AGGTGAGGGGTTAGCCACAACTTACCAGACAGCTTGGAAATCGCACCTGG  249
      | ||||||||||||||||||||||||||||||| | |||||||||||| |
seq2  A-GTGAGGGGTTAGCCACAACTTACCAGACAGCCTTGAAATCGCACCT-G  237

seq1  GAACCTAGAGCTTTCTCTTTCTGCCTGACCGTGACAAAGCTTTCACAAGA  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAACCTAGAGCTTTCTCTTTCTGCCTGACCGTGACAAAGC-TTCACAAGA  286

seq1  CATCAAAGGTGAGCTGATCTCAAGGATTCTTTACACAGCTCCTTCTGGGT  349
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATC-AAGATGAGCTGATCTCAAGGATTCTTTACACAGCTCCTTCTGGGT  335

seq1  GACCCTCCTATTGACTGTCCTT-CCACAGAGACCCAACATTTATACCACA  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACCCTCCTATTGACTGTCCTTCCCACAGAGACCCAACATTTATACCACA  385

seq1  GAGGAATTCTTCCTGACGCACGAAGCTTCCTCGGCACTTCCTGGATCACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCTTCCTGACGCACGAAGCTTCCTCGGCACTTCCTGGATCACT  435

seq1  GAGCTCTCTGACTTTGCCTGAAGTGCAATCAGATTTCTTTCTGGAAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTGACTTTGCCTGAAGTGCAATCAGATTTCTTTCTGGAAACAC  485

seq1  CTACCTCCTTAACATGAACAAGGAGAAGACCTAGGAACCCAGGACTACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCTTAACATGAACAAGGAGAAGACCTAGGAACCCAGGACTACAC  535

seq1  ACTGTATAGAGTGTTTAGGGTGCCCAGTACAACCTTAGGCAGGACAGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATAGAGTGTTTAGGGTGCCCAGTACAACCTTAGGCAGGACAGTGT  585

seq1  TGCTGGAGCCCCTGCTATGCTATGGCCTTAAGTGGTCTCATCCCTCCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGCCCCTGCTATGCTATGGCCTTAAGTGGTCTCATCCCTCCATC  635

seq1  TTCTCATCTTCCTGATATCTTTGGGCAAGAGACTTGGCGGCAACAATCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTTCCTGATATCTTTGGGCAAGAGACTTGGCGGCAACAATCTG  685

seq1  AGATGCTGGGTTTTGTTTGTCCTAGGGTCTGCCAGCACACGCGGTAATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGGTTTTGTTTGTCCTAGGGTCTGCCAGCACACGCGGTAATTA  735

seq1  AAATGTTGATTAGTAAACAGTTGCACCATATGACAGCCAGTGCGGCTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGATTAGTAAACAGTTGCACCATATGACAGCCAGTGCGGCTAAA  785

seq1  GCCTACAGTTAGGTCAATAAGTGATTTAGACTTGCCATTTAAAAAAAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGTTAGGTCAATAAGTGATTTAGACTTGCCATTTAAAAAAAATC  835

seq1  TCATTTAAATTTTGCATACATTAATCACTACCATACTTCAAGGTTCTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAATTTTGCATACATTAATCACTACCATACTTCAAGGTTCTGAT  885

seq1  ATCCACCTGACTACAATATTAAAATAAAACTTGCTGCCCCAGGGAAATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGACTACAATATTAAAATAAAACTTGCTGCCCCAGGGAAATCC  935

seq1  TACTTATTCTTAATTGTTTCCAGGCTTTGATGGGCTTTTAATCTAAGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTCTTAATTGTTTCCAGGCTTTGATGGGCTTTTAATCTAAGATT  985

seq1  AATTTATGCAATTTTAAATAACTCTTCTTATGATTAATAAGCTTGAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCAATTTTAAATAACTCTTCTTATGATTAATAAGCTTGAAAAT  1035

seq1  TAAAAGGAGTCTAAAGCAATTATAATGAGCATTTGGTCATAACCTCATTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGTCTAAAGCAATTATAATGAGCATTTGGTCATAACCTCATTA  1085

seq1  GATGAGGGAGTGAAGGGTACAGCTTTGGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  GATGAGGGAGTGAAGGGTACAGCTTTGGAATTC  1118