BAC Information

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BAC

Clone NameB6Ng01-009A06
Chromosome9 (Build37)
Map Location 33,962,512 - 34,121,496
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A06.bB6Ng01-009A06.g
ACCDH845078DH845079
length1,1871,038
definitionDH845078|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A06, 5' end.DH845079|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,962,512 - 33,963,717)(34,120,462 - 34,121,496)
sequence
gaattctttccatatttctaagcctacagaatgactcatattagggactc
atagaataacgtggtcaaatgaagaagaagaagtactttaaggccaaaga
agacactgaaaaataatacttgaattgtgtgtaaaaggttgttaggtggc
agatgagtatggcaagcctctgcctgggtgtaaaggatctatacggtgca
cagactcctctgctgaattccccacccacagcccctacagaaggcctcca
gaaacgctttacaacagcgctgtgcaggaaaaagagtgctaccgccatcc
ttctgagccctcttccaccttgccagtgcttagggatttaacggcatatc
aataacttcagcaggatgcctgctcccagctccttttagcattacacgag
gccagagagctagggagcctcaagggtgcagcactagcccctggctcctg
tcacctggtccatctgctcttcatgtgaccccagcttgctagcagctccc
aggggtgcctccctcacacatgagcccttctgctagctcccattggctcg
gtgagtcttggcttctcagctaagaggcaatgactgaggtaaaccttggc
accacaaaccccacagccataaatttcacttacatctagtaaaacacagg
catccaattaaacccataatcctataaacttgccagcaatcaagctcccg
gtttaaaatgaagacagacaggtgcactcaatcaataccatcgaggttac
agcctgcattttgtaggctgttcctacactgaatcttgcaggctattcat
gctgctgtttgttttctgtctgggtagaaataacaaatgctctgtttact
cttccgttacattgtactgtacaatgatgtatggctgactcctgagggta
gccacacatgaggcatgcagtaacagtgtccttctcagtgcagccccact
ctcacagcaggcctggatggtcaccgtctggccagaccccgatttaaccc
tggaatactttagaagctcatagtgtattcctcgttttagaaagggaacc
ctcatgagcgttgtgtgggactccaccctttccttcgcctctggcttcac
tctagagttatcttttcggccaccggaagaaacaaagtatcagggctatg
gtatccattacagggatttcgttagttacattttgag
gaattctttcctctactcagtgcagaatgctggcccttcaaatgggctgg
ttggacaaaacttggtactttaatccacaaacgtgatagcaagggtagga
atgcctcctgctctggttatttttcatcaacttgacataagttagagtca
cctgggaagagggaaactcaattgagaagatacccctatcagattatgtt
gtatgctagtctgtggaacattttcttgattaatgaatgatgtggagatc
ccagcctggtgtgggcattacgacccctaggcaggtgggcctggttatat
agaaaaacaatcagactcagccatgaagaccaggcagtaagcattgttcc
tctatgtgttttcatacctctgcatttgtttgagttcctgctctgacttc
cctcaaatgatggactgtgattgggatgtgtaagccaattaaacccctca
ctccccaaattatgttcagtcatgatgtttatcacaggattagaaagcaa
actagaaaccactctgaaaggatgttctgcaaatcctctgaaatcctgct
gaagctgaggcacttgagtactgaccatggtttggctactagagacactg
tgatagagaaccaatgaggggcctgcttcatctcaggctctgtgactgca
caacgatgtgccactaggcctgcttcttcacttcagagagcttgaaaaaa
aattgaataatacagggtttatagtctgcaaatacctacacaagagacct
cagtgctgtttggtgctcagtgagcatggtgcacactggaatacaggaag
ctgagcaaagacactcctccttagcttcagctctggacttgatacaggcc
agggttatctgagggatgctcccctggggattgcctccatcaaattgggt
tgtgggaatatctgtagagatttttttgattgttagttggtgtaggaggc
cacaacattgtttgccgtgcctccctgggcaggaaggcttgagatattga
aaaaagtcactgcacaaaagcctgggggcatgtaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33962512_33963717
seq2: B6Ng01-009A06.b_47_1233

seq1  GAATTCTTTCCATATTTCTAAGCCTACAGAATGACTCATATTAGGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATATTTCTAAGCCTACAGAATGACTCATATTAGGGACTC  50

seq1  ATAGAATAACGTGGTCAAATGAAGAAGAAGAAGTACTTTAAGGCCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAACGTGGTCAAATGAAGAAGAAGAAGTACTTTAAGGCCAAAGA  100

seq1  AGACACTGAAAAATAATACTTGAATTGTGTGTAAAAGGTTGTTAGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGAAAAATAATACTTGAATTGTGTGTAAAAGGTTGTTAGGTGGC  150

seq1  AGATGAGTATGGCAAGCCTCTGCCTGGGTGTAAAGGATCTATACGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTATGGCAAGCCTCTGCCTGGGTGTAAAGGATCTATACGGTGCA  200

seq1  CAGACTCCTCTGCTGAATTCCCCACCCACAGCCCCTACAGAAGGCCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTCTGCTGAATTCCCCACCCACAGCCCCTACAGAAGGCCTCCA  250

seq1  GAAACGCTTTACAACAGCGCTGTGCAGGAAAAAGAGTGCTACCGCCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCTTTACAACAGCGCTGTGCAGGAAAAAGAGTGCTACCGCCATCC  300

seq1  TTCTGAGCCCTCTTCCACCTTGCCAGTGCTTAGGGATTTAACGGCATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCCCTCTTCCACCTTGCCAGTGCTTAGGGATTTAACGGCATATC  350

seq1  AATAACTTCAGCAGGATGCCTGCTCCCAGCTCCTTTTAGCATTACACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCAGCAGGATGCCTGCTCCCAGCTCCTTTTAGCATTACACGAG  400

seq1  GCCAGAGAGCTAGGGAGCCTCAAGGGTGCAGCACTAGCCCCTGGCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGCTAGGGAGCCTCAAGGGTGCAGCACTAGCCCCTGGCTCCTG  450

seq1  TCACCTGGTCCATCTGCTCTTCATGTGACCCCAGCTTGCTAGCAGCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGTCCATCTGCTCTTCATGTGACCCCAGCTTGCTAGCAGCTCCC  500

seq1  AGGGGTGCCTCCCTCACACATGAGCCCTTCTGCTAGCTCCCATTGGCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCCTCCCTCACACATGAGCCCTTCTGCTAGCTCCCATTGGCTCG  550

seq1  GTGAGTCTTGGCTTCTCAGCTAAGAGGCAATGACTGAGGTAAACCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTTGGCTTCTCAGCTAAGAGGCAATGACTGAGGTAAACCTTGGC  600

seq1  ACCACAAACCCCACAGCCATAAATTTCACTTACATCTAGTAAAACACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACCCCACAGCCATAAATTTCACTTACATCTAGTAAAACACAGG  650

seq1  CATCCAATTAAACCCATAATCCTATAAACTTGCCAGCAATCAAGCTCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATTAAACCCATAATCCTATAAACTTGCCAGCAATCAAGCTCCCG  700

seq1  GTTTAAAATGAAGACAGACAGGTGCACTCAATCAATACCATCGAGGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATGAAGACAGACAGGTGCACTCAATCAATACCATCGAGGTTAC  750

seq1  AGCCTGCATTTTGTAGGCTGTTCCTACACTGAATCTTGCAGGCTATTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATTTTGTAGGCTGTTCCTACACTGAATCTTGCAGGCTATTCAT  800

seq1  GCTGCTGTTTGTTTTCTGCCTGGGTAGAAATAACAAATGCTCTGTTTACT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTGTTTTCTGTCTGGGTAGAAATAACAAATGCTCTGTTTACT  850

seq1  CTTCCGTTACATTGTACTGTACAATGATGTATGGCTGACTCCTGAGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTTACATTGTACTGTACAATGATGTATGGCTGACTCCTGAGGGTA  900

seq1  GCCACACATGAGGCATGCAGTAACAGTGTCCCTTCTCAGTGCAGCCCCAC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCACACATGAGGCATGCAGTAACAGTGT-CCTTCTCAGTGCAGCCCCAC  949

seq1  TCCTCACAGCAGGCCTGGATGGTCACCGTCTGGCCAGACCCCCGATTTAA  1000
      | |||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  T-CTCACAGCAGGCCTGGATGGTCACCGTCTGGCCAGA-CCCCGATTT-A  996

seq1  ACCCTGG-ATACTTTAG-AGCTCATAGGTGTATTCCTCGTTTTAAGAAAG  1048
      ||||||| ||||||||| |||||||| |||||||||||||||| ||||||
seq2  ACCCTGGAATACTTTAGAAGCTCATA-GTGTATTCCTCGTTTT-AGAAAG  1044

seq1  GGAACCCTCATGAGCGTTGTGT-GGACTTCCCACCCTTTCCTTCGGCCTC  1097
      |||||||||||||||||||||| |||||  |||||||||||||| |||||
seq2  GGAACCCTCATGAGCGTTGTGTGGGACT--CCACCCTTTCCTTC-GCCTC  1091

seq1  TGGCTAC-CTCTAGAGTTATCTTTCTGGCCACCAGGAAGATAACAATGTA  1146
      ||||| | ||||||||||||||||  ||||||| |||||| ||||| |||
seq2  TGGCTTCACTCTAGAGTTATCTTTTCGGCCACC-GGAAGA-AACAAAGTA  1139

seq1  TCAGGTTGCTATGGTTATCCAATTTACAGGGGATTTGCTTTAAAGGTTAA  1196
      |||||  ||||||| ||||||  ||||| ||||||| | |||   |||  
seq2  TCAGG--GCTATGG-TATCCA--TTACA-GGGATTT-CGTTA---GTT--  1177

seq1  ACATTTTGAG  1206
      ||||||||||
seq2  ACATTTTGAG  1187

seq1: chr9_34120462_34121496
seq2: B6Ng01-009A06.g_79_1108 (reverse)

seq1  TGCTGACATGCACCCAGGCTTTTGTGCAGTGACCTTTCTCATATACTCCA  50
      |||| |||||| ||||||||||||||||||||| ||| ||| |||   ||
seq2  TGCTTACATGCCCCCAGGCTTTTGTGCAGTGACTTTTTTCA-ATATCTCA  49

seq1  GGCCTTCCTGCCCAGGGGAGGCACGGCCAACAATGTTGTGGGCCCTCCTA  100
       ||||||||||||| |||||||||||| |||||||||||||  |||||||
seq2  AGCCTTCCTGCCCA-GGGAGGCACGGCAAACAATGTTGTGG--CCTCCTA  96

seq1  CACCAACTAACAATCAAAAAAATCTCTACAGATATTCCCACAACCCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTAACAATCAAAAAAATCTCTACAGATATTCCCACAACCCAATT  146

seq1  TGATGGAGGCAATCCCCCAGGGGAGCATCCCTCAGATAACCCTGGCCTGT  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGCAAT-CCCCAGGGGAGCATCCCTCAGATAACCCTGGCCTGT  195

seq1  ATCAAGTCCAGAGCTGAAGCTAAGGAGGAGTGTCTTTGCTCAGCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCCAGAGCTGAAGCTAAGGAGGAGTGTCTTTGCTCAGCTTCCTG  245

seq1  TATTCCAGTGTGCACCATGCTCACTGAGCACCAAACAGCACTGAGGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGTGTGCACCATGCTCACTGAGCACCAAACAGCACTGAGGTCTC  295

seq1  TTGTGTAGGTATTTGCAGACTATAAACCCTGTATTATTCAATTTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGGTATTTGCAGACTATAAACCCTGTATTATTCAATTTTTTTTC  345

seq1  AAGCTCTCTGAAGTGAAGAAGCAGGCCTAGTGGCACATCGTTGTGCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCTGAAGTGAAGAAGCAGGCCTAGTGGCACATCGTTGTGCAGTC  395

seq1  ACAGAGCCTGAGATGAAGCAGGCCCCTCATTGGTTCTCTATCACAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTGAGATGAAGCAGGCCCCTCATTGGTTCTCTATCACAGTGTC  445

seq1  TCTAGTAGCCAAACCATGGTCAGTACTCAAGTGCCTCAGCTTCAGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAGCCAAACCATGGTCAGTACTCAAGTGCCTCAGCTTCAGCAGGA  495

seq1  TTTCAGAGGATTTGCAGAACATCCTTTCAGAGTGGTTTCTAGTTTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGGATTTGCAGAACATCCTTTCAGAGTGGTTTCTAGTTTGCTTT  545

seq1  CTAATCCTGTGATAAACATCATGACTGAACATAATTTGGGGAGTGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTGTGATAAACATCATGACTGAACATAATTTGGGGAGTGAGGGG  595

seq1  TTTAATTGGCTTACACATCCCAATCACAGTCCATCATTTGAGGGAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGCTTACACATCCCAATCACAGTCCATCATTTGAGGGAAGTCA  645

seq1  GAGCAGGAACTCAAACAAATGCAGAGGTATGAAAACACATAGAGGAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAACTCAAACAAATGCAGAGGTATGAAAACACATAGAGGAACAA  695

seq1  TGCTTACTGCCTGGTCTTCATGGCTGAGTCTGATTGTTTTTCTATATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTGCCTGGTCTTCATGGCTGAGTCTGATTGTTTTTCTATATAAC  745

seq1  CAGGCCCACCTGCCTAGGGGTCGTAATGCCCACACCAGGCTGGGATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCACCTGCCTAGGGGTCGTAATGCCCACACCAGGCTGGGATCTCC  795

seq1  ACATCATTCATTAATCAAGAAAATGTTCCACAGACTAGCATACAACATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTCATTAATCAAGAAAATGTTCCACAGACTAGCATACAACATAA  845

seq1  TCTGATAGGGGTATCTTCTCAATTGAGTTTCCCTCTTCCCAGGTGACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGGGGTATCTTCTCAATTGAGTTTCCCTCTTCCCAGGTGACTCT  895

seq1  AACTTATGTCAAGTTGATGAAAAATAACCAGAGCAGGAGGCATTCCTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGTCAAGTTGATGAAAAATAACCAGAGCAGGAGGCATTCCTACC  945

seq1  CTTGCTATCACGTTTGTGGATTAAAGTACCAAGTTTTGTCCAACCAGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATCACGTTTGTGGATTAAAGTACCAAGTTTTGTCCAACCAGCCC  995

seq1  ATTTGAAGGGCCAGCATTCTGCACTGAGTAGAGGA  1035
      |||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGGCCAGCATTCTGCACTGAGTAGAGGA  1030