BAC Information

Click to search

BAC

Clone NameB6Ng01-009E17
Chromosome9 (Build37)
Map Location 45,635,999 - 45,779,737
singlet/doubletdoublet
Overlap geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2
Upstream geneMll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
Downstream gene2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E17.bB6Ng01-009E17.g
ACCDH845276DH845277
length1,078101
definitionDH845276|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E17, 5' end.DH845277|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,778,644 - 45,779,737)(45,635,999 - 45,636,099)
sequence
gaattcttctgtccctcccatctcagactaggagtgctgggattgcagct
gcctctgctgggcctggcttttcatggattctgggcaacttgggcagtga
tcactctacccattgagcaatctctgcggctaggaacttaatatcttatt
ttagagacaatttaaaatcaaacagagtgggggaatcaaacagcatacct
tggtacttttattaagaaaaaacacatatttttcttcataattagttttg
tttgtatgtttattaattttttcttctacaacatggtttctggggattga
agttaaatccccaggttttttggcaatgtctttcccattgagccatctca
gtggcttcatttttttctcattcttgtttataaatctcagtagacatgtt
accttgatcatgagaaatattcactctgccattctgtatgatttgaaagc
tggaacaaagtatgtgattattggtaattgattatcttttctggttactc
cttctgtctcaaccagactttgctgtattatcatttgtagcatgagaaat
attaggtacagagcccttttttttccctttctttctttttgagacagggt
cttctgtagccaaagctggcatcatggcattagactcaatatgatgtagc
tgaaggtgacattagcccccaacagtgagaaacacaagcatgtgcaatca
ctcagtccctcagtttacacttaacagtaagaagcttggttttaggactg
acttgatcatttgaaatgttttagcataacaggtatggagggagatgatc
agtgtaacaaactgagaattctcggtggcttttggaaaagtataaatcat
aagcaattaacaaccaaggccccatatgttactgaaagactagcatagat
atgtacaagaatgtgctttggatatatgttcgttttttgtaaagtgatta
acagtaaagaattcatggtactcatgtagagctctttttttttttaagat
tatttatgatatgagtacactgcacaaagaatggttgggaggcttcagaa
gatgtggaaatcatttttaggacttctg
tcagcgtagagtgggctaagtgactgaggaagttctccattgagacaaga
aacatgggagacattgatagaaggtccgggggggggggcggcgggggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45778644_45779737
seq2: B6Ng01-009E17.b_50_1127 (reverse)

seq1  CAGAGGTCCTAAAAATTGAATTTCCAACAACTACATGAAGGCTCACAACC  50
      |||| |||||||||||   |||||| ||| || | ||||| ||| |||||
seq2  CAGAAGTCCTAAAAAT--GATTTCC-ACATCTTC-TGAAGCCTCCCAACC  46

seq1  ATCTATCTGTGCAGTGTACTCATATACATAAAATAAATCTTTAAAAAAAA  100
      || | | |||||||||||||||||| ||||||   |||||| ||||||||
seq2  AT-TCTTTGTGCAGTGTACTCATAT-CATAAA--TAATCTTAAAAAAAAA  92

seq1  AAGAGCTCTACCATGAGCTACCATGAATTCTTTACTGTTAATTCCACTTT  150
      |||||||||| |||||| ||||||||||||||||||||||||  ||||||
seq2  AAGAGCTCTA-CATGAG-TACCATGAATTCTTTACTGTTAAT--CACTTT  138

seq1  ACAAAAAACAAACATATATTCAAAGCACATTCTTGTACATATCTATGCTA  200
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAAAAACGAACATATATCCAAAGCACATTCTTGTACATATCTATGCTA  188

seq1  GTTCTTTCAGTAACATATTGGGGCTTTGGTTGTTAATTTGCTTATGATTT  250
      | ||||||||||||||| |||||| ||||||||||| |||||||||| ||
seq2  G-TCTTTCAGTAACATA-TGGGGCCTTGGTTGTTAA-TTGCTTATGA-TT  234

seq1  TATACTTTTCCAAAAGCCACCGAGAATTCTCAGTTTGTTACACTGATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTCCAAAAGCCACCGAGAATTCTCAGTTTGTTACACTGATCAT  284

seq1  CTCCCTCCATACCTGTTATGCTAAAACATTTCAAATGATCAAGTCAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCATACCTGTTATGCTAAAACATTTCAAATGATCAAGTCAGTCC  334

seq1  TAAAACCAAGCTTCTTACTGTTAAGTGTAAACTGAGGGACTGAGTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAAGCTTCTTACTGTTAAGTGTAAACTGAGGGACTGAGTGATTG  384

seq1  CACATGCTTGTGTTTCTCACTGTTGGGGGCTAATGTCACCTTCAGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTTGTGTTTCTCACTGTTGGGGGCTAATGTCACCTTCAGCTACA  434

seq1  TCATATTGAGTCTAATGCCATGATGCCAGCTTTGGCTACAGAAGACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGAGTCTAATGCCATGATGCCAGCTTTGGCTACAGAAGACCCTG  484

seq1  TCTCAAAAAGAAAGAAAGGGAAAAAAAAGGGCTCTGTACCTAATATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAGAAAGAAAGGGAAAAAAAAGGGCTCTGTACCTAATATTTCT  534

seq1  CATGCTACAAATGATAATACAGCAAAGTCTGGTTGAGACAGAAGGAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACAAATGATAATACAGCAAAGTCTGGTTGAGACAGAAGGAGTAA  584

seq1  CCAGAAAAGATAATCAATTACCAATAATCACATACTTTGTTCCAGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGATAATCAATTACCAATAATCACATACTTTGTTCCAGCTTTC  634

seq1  AAATCATACAGAATGGCAGAGTGAATATTTCTCATGATCAAGGTAACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATACAGAATGGCAGAGTGAATATTTCTCATGATCAAGGTAACATG  684

seq1  TCTACTGAGATTTATAAACAAGAATGAGAAAAAAATGAAGCCACTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAGATTTATAAACAAGAATGAGAAAAAAATGAAGCCACTGAGAT  734

seq1  GGCTCAATGGGAAAGACATTGCCAAAAAACCTGGGGATTTAACTTCAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATGGGAAAGACATTGCCAAAAAACCTGGGGATTTAACTTCAATC  784

seq1  CCCAGAAACCATGTTGTAGAAGAAAAAATTAATAAACATACAAACAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACCATGTTGTAGAAGAAAAAATTAATAAACATACAAACAAAAC  834

seq1  TAATTATGAAGAAAAATATGTGTTTTTTCTTAATAAAAGTACCAAGGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGAAGAAAAATATGTGTTTTTTCTTAATAAAAGTACCAAGGTAT  884

seq1  GCTGTTTGATTCCCCCACTCTGTTTGATTTTAAATTGTCTCTAAAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGATTCCCCCACTCTGTTTGATTTTAAATTGTCTCTAAAATAAG  934

seq1  ATATTAAGTTCCTAGCCGCAGAGATTGCTCAATGGGTAGAGTGATCACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGTTCCTAGCCGCAGAGATTGCTCAATGGGTAGAGTGATCACTG  984

seq1  CCCAAGTTGCCCAGAATCCATGAAAAGCCAGGCCCAGCAGAGGCAGCTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTGCCCAGAATCCATGAAAAGCCAGGCCCAGCAGAGGCAGCTGC  1034

seq1  AATCCCAGCACTCCTAGTCTGAGATGGGAGGGACAGAAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCCTAGTCTGAGATGGGAGGGACAGAAGAATTC  1078

seq1: chr9_45635999_45636099
seq2: B6Ng01-009E17.g_76_176

seq1  TCAGCGTAGAGTGGGCTAAGTGACTGAGGAAGTTCTCCATTGAGACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTAGAGTGGGCTAAGTGACTGAGGAAGTTCTCCATTGAGACAAGA  50

seq1  AACATGGGAGACATTGATAGAAGGTCCGGGGGGGGGGGCGGCGGGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGAGACATTGATAGAAGGTCCGGGGGGGGGGGCGGCGGGGGGGG  100

seq1  G  101
      |
seq2  G  101