BAC Information

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BAC

Clone NameB6Ng01-009H11
Chromosome9 (Build37)
Map Location 27,853,419 - 27,982,509
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneNcapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H11.bB6Ng01-009H11.g
ACCDH845397DH845398
length9701,060
definitionDH845397|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H11, 5' end.DH845398|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,981,539 - 27,982,509)(27,853,419 - 27,854,469)
sequence
gaattcttaactgatgctccacatctgttttcctgctctgttctcagtcc
ctctgaccctaccaatctagttttctcatcctgacatcccagcagccaca
agaaggcatgtgttcccacaaggactaccttctcaattggctgactactc
ctctgccttgaggtgtcaggtttaccgccacagtctccaaggtgccttta
acctgtgtcctatgagccacatgtgtcccaagatatctatgaatgaagcg
tgcaaaattataaacttacttaaaacaggacatggttttgtgttttgttg
gtttgttttcagatgggttgtgccattctcagatgcaaacactgaggatg
acaatgtagtgatccagtgtcaaaggctgggtatactatagagaacaacg
ccttctttgtctctcagtctctagactttccagagccttcctcatgagac
aggtcaggtcacctctgtccacttaggcagtcagctcatgaacctggtaa
cttttaggggaagaaccttgcttctctgtcgcacaataggagataacaaa
atctttgttgagttgtttaaaaaaataaaaataaaagtggcatacaataa
tttaccctagaccaggcaggcgatagtggctcatgcctttaatcaaagct
gaggcaggtggatctctgagtttcaggctagcctagtctactgaatgagt
tccaggatggcctgggctgcacagagaaactctatctcaaaaagaacaac
acaaaacaaaagagtatttcttcctaaaccttataataatgaagaatctt
cagtgtttattgaaaaaatgccttttaaatgatataccttgagtaaataa
ctcttttaagttcccaaagcagaaaaggctacttctaagaattaaaaaga
aacctaaagaaactatgactttagatattatatatgtatatgtatatgta
tatataatgtatatgtataa
gaattctttttaatgctggtgtgctgagaattgaggagtggatggcacag
atgtggggctcttaagactttttgaaagataaatgaaggaaaacagattt
ggatttttttttctgtttctgttttctttataaagaaaagctcaccctta
atatctaatggactgaaatccggaagaggtaagctggcatgttgatcagt
ggtagagtatttacctacaatgtgtggaactctggttttacccacaaatc
aagtagaagactgaagattcccaattggttaaagctgccatctgtgagga
ccagagatgaaagggaggggggatacagaggcattagtaggactctgctc
tctatagggagtgggttagtttgaggaggaagcagagaatagagaaagga
atgcaaatggactgcagagactctgcagggacatcaccagaacagtggga
gaactcactgtgagtgctgagctgaggcctgaaagccagtgtgccctctt
tctcactgcctggtattttctggcttattcaccccttttatttccctacc
ctttcatttgaaagcatgttggagtagccaaggtcagaatgtctttgtct
cagtgtcgtacttctggatacagagagaatcaccagtcttctgttaataa
gtatgtttctaatcacattgagatatctgggtaaatcttttaaaatatcg
taaattgccagtcataaggtatttccctacaacagagaggcatgtttttt
ctaggcaccatgagtcttatattctagaaaccatttctgataatcagatt
cttatattgaatcttcagataaattttccttcaagctattattactgtat
ggtgatctgttcccttatttgttttcactcttgtcatcttttatagagga
cttgacctttctcatggaagaatgcactccctcaccttgaacacagaggg
gtgttcttatttatgttttccattgctgtggagagatctccatgaccaag
gcaactcttatgaatgaaacatttaattgagtcttggcttacagaggttt
cagttccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27981539_27982509
seq2: B6Ng01-009H11.b_46_1014 (reverse)

seq1  TATACATATACA-TATATATACATATACATATACATATATATATATCTTA  49
      |||||||||||| |||||||||||||||||||||||||||| ||||| ||
seq2  TATACATATACATTATATATACATATACATATACATATATA-ATATC-TA  48

seq1  AAGTCATAGTTTCTTTAGGTTTCTTTTTTAATTCTTAGAAGTAGCCTTTT  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGTCATAGTTTCTTTAGGTTTC-TTTTTAATTCTTAGAAGTAGCCTTTT  97

seq1  CTGCTTTGGGAACTTAAAAGAGTTATTTACTCAAGGTATATCATTTGAAA  149
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCTTTGGGAACTTAAAAGAGTTATTTACTCAAGGTATATCATTTAAAA  147

seq1  GGCATTTTTTCAATAAACACTGAAGATTCTTCATTATTATAAGGTTTAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTTCAATAAACACTGAAGATTCTTCATTATTATAAGGTTTAGG  197

seq1  AAGAAATACTCTTTTGTTTTGTGTTGTTCTTTTTGAGATAGAGTTTCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATACTCTTTTGTTTTGTGTTGTTCTTTTTGAGATAGAGTTTCTCT  247

seq1  GTGCAGCCCAGGCCATCCTGGAACTCATTCAGTAGACTAGGCTAGCCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCCAGGCCATCCTGGAACTCATTCAGTAGACTAGGCTAGCCTGA  297

seq1  AACTCAGAGATCCACCTGCCTCAGCTTTGATTAAAGGCATGAGCCACTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCCACCTGCCTCAGCTTTGATTAAAGGCATGAGCCACTAT  347

seq1  CGCCTGCCTGGTCTAGGGTAAATTATTGTATGCCACTTTTATTTTTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTGGTCTAGGGTAAATTATTGTATGCCACTTTTATTTTTATTT  397

seq1  TTTTAAACAACTCAACAAAGATTTTGTTATCTCCTATTGTGCGACAGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAACTCAACAAAGATTTTGTTATCTCCTATTGTGCGACAGAGA  447

seq1  AGCAAGGTTCTTCCCCTAAAAGTTACCAGGTTCATGAGCTGACTGCCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTTCTTCCCCTAAAAGTTACCAGGTTCATGAGCTGACTGCCTAA  497

seq1  GTGGACAGAGGTGACCTGACCTGTCTCATGAGGAAGGCTCTGGAAAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGAGGTGACCTGACCTGTCTCATGAGGAAGGCTCTGGAAAGTCT  547

seq1  AGAGACTGAGAGACAAAGAAGGCGTTGTTCTCTATAGTATACCCAGCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGAGAGACAAAGAAGGCGTTGTTCTCTATAGTATACCCAGCCTT  597

seq1  TGACACTGGATCACTACATTGTCATCCTCAGTGTTTGCATCTGAGAATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGGATCACTACATTGTCATCCTCAGTGTTTGCATCTGAGAATGG  647

seq1  CACAACCCATCTGAAAACAAACCAACAAAACACAAAACCATGTCCTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCATCTGAAAACAAACCAACAAAACACAAAACCATGTCCTGTTT  697

seq1  TAAGTAAGTTTATAATTTTGCACGCTTCATTCATAGATATCTTGGGACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGTTTATAATTTTGCACGCTTCATTCATAGATATCTTGGGACAC  747

seq1  ATGTGGCTCATAGGACACAGGTTAAAGGCACCTTGGAGACTGTGGCGGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCATAGGACACAGGTTAAAGGCACCTTGGAGACTGTGGCGGTA  797

seq1  AACCTGACACCTCAAGGCAGAGGAGTAGTCAGCCAATTGAGAAGGTAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACACCTCAAGGCAGAGGAGTAGTCAGCCAATTGAGAAGGTAGTC  847

seq1  CTTGTGGGAACACATGCCTTCTTGTGGCTGCTGGGATGTCAGGATGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGAACACATGCCTTCTTGTGGCTGCTGGGATGTCAGGATGAGAA  897

seq1  AACTAGATTGGTAGGGTCAGAGGGACTGAGAACAGAGCAGGAAAACAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATTGGTAGGGTCAGAGGGACTGAGAACAGAGCAGGAAAACAGAT  947

seq1  GTGGAGCATCAGTTAAGAATTC  971
      ||||||||||||||||||||||
seq2  GTGGAGCATCAGTTAAGAATTC  969

seq1: chr9_27853419_27854469
seq2: B6Ng01-009H11.g_69_1128

seq1  GAATTCTTTCAAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50

seq1  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100

seq1  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150

seq1  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200

seq1  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250

seq1  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300

seq1  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350

seq1  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400

seq1  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450

seq1  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500

seq1  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550

seq1  CTTTCATTTGAAAGCATGTTGGAGTAGCCAAGGTCAGAATGTCTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGAAAGCATGTTGGAGTAGCCAAGGTCAGAATGTCTTTGTCT  600

seq1  CAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATAA  650

seq1  GTATGTTTCTAATCACATTGAGATATCTGGGTAAATCTTT--AAATATCG  698
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GTATGTTTCTAATCACATTGAGATATCTGGGTAAATCTTTTAAAATATCG  700

seq1  T-AATTGCCAGTCATAAGGTATTT-CCTACAACAGAGAGGCATG-TTTTT  745
      | |||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  TAAATTGCCAGTCATAAGGTATTTCCCTACAACAGAGAGGCATGTTTTTT  750

seq1  CTAGGCACCATGAGTCTTATATTCTAGAAACCATTTCTGATAATCAGATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACCATGAGTCTTATATTCTAGAAACCATTTCTGATAATCAGATT  800

seq1  CTTATATTGAATCTTCAGATAAATTTTCCTTCAAGCTATTATTACTGTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTGAATCTTCAGATAAATTTTCCTTCAAGCTATTATTACTGTAT  850

seq1  GGTGATCTG-TCCCTTATTTTGTTTTCACTCTTGTCATCTTTTATAGAGG  894
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GGTGATCTGTTCCCTTA-TTTGTTTTCACTCTTGTCATCTTTTATAGAGG  899

seq1  ACCTGACC-TTCTCATGGAAGAATGCACTCCC-CACCTTGAACAGCAAGA  942
      || ||||| ||||||||||||||||||||||| |||||||||||   |||
seq2  ACTTGACCTTTCTCATGGAAGAATGCACTCCCTCACCTTGAACA--CAGA  947

seq1  GGGGTG-TCTTAGTTAGGTTTTCCATTGCTGTGAAGAGA-CACCATGACC  990
      |||||| ||||| ||| |||||||||||||||| ||||| | ||||||||
seq2  GGGGTGTTCTTATTTATGTTTTCCATTGCTGTGGAGAGATCTCCATGACC  997

seq1  AAGGCAACTCTTATGAATGACAACATTTAATTGAGTC-TGGCTTACAGAG  1039
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AAGGCAACTCTTATGAATGA-AACATTTAATTGAGTCTTGGCTTACAGAG  1046

seq1  G-TTCAG-TCCATT  1051
      | ||||| ||||||
seq2  GTTTCAGTTCCATT  1060