BAC Information

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BAC

Clone NameB6Ng01-009K10
Chromosome6 (Build37)9 (Build37)
Map Location 30,518,037 - 30,519,0445,944,390 - 5,944,586
singlet/doubletsingletsinglet
Overlap geneCpa4
Upstream geneTnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2
Downstream geneCpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K10.bB6Ng01-009K10.g
ACCDH845535DH845536
length1,002740
definitionDH845535|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K10, 5' end.DH845536|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,518,037 - 30,519,044)(5,944,390 - 5,944,586)
sequence
gaattccaaccagcagtgtggggatatttcccttttctcaaacacacaca
cacacacacacacacacacacacacacacaccccacacacaaaatcacca
ctgagatgccaagtgatgaacaatgaggcatcctgggtaagacattccca
gcctgcggagcaagttcctgccttgcaaatggaaaggctgggccttcatc
actggaaaggaatggaggaggccctggctggtgctgccttgtcagagctg
gaagggtgctgaagaaccacattagcatttctgagaacatgaatctgcct
cgggttccttataaatactgcttgactcagtcagtatgtgactggcgccc
ttgagacatgaagtggctactgttctttggggccctgattggggcaggca
tctgcggccgagataaattctttgggtgagttctttttgaactttattag
catttagttatttcaccaacttgggagccaaatgaattatactttaggtg
gtagggctgggcttatatctcctctgtcccactgtcctggaccagccact
tctctctgaaacctgacttctcctgtgaaatcaaagctggtggtctccac
agatcctccccagctccttaacctccagctaattttgtatcttcttcctt
ctttctaaggccaatcctctatctcacctcttcctacaccatttaatttc
ggaagaatggtcagaaaggctttggcagtttctgccccggtttaaaaggg
gaatagctgggttctcagctttggggacagatagtctctatcattggtga
aacctgtgtatagctgggcattccacagcttctggaacaaggagatccaa
taggtcatgtctatctgtagctacagaattgttactcgggtactctgtgt
gtctgtgcgtgcataggtcacatgctccatgcagacattgtggagttgtg
aggacaggaagcagagagtagggtgatatcaggatgctctgtacctcgta
ga
gaattcttttactaagatgagtttttcttaattcttgtacctaattaatg
ctgacctaaaaacgtggcttggggagtgatctttcttcatcctctggaag
ctttggtgtggaacaagtgttattcctcccttaaatatttggtagaatta
tcaatgaagacattttggcctgaggggctgttttgaagtgtttgagttgg
ttggtggaaaagaggttttagtctttacattagattcctttaatagatac
atgacagttcttggcacctgtttctatcttgaatggggctgagtagaata
ttttgttgggaatttttcacatactttctattcacaaatattaatgtcct
tttgatatctgcaggatccagagtgaaacccatctctcattccttacata
aggaacttgtctcttctctcttttcttcttgacaaaatggctgcagactt
atccactttattgataaacccaaataaccaggttttaaacctcttaaaag
ggaggagctctttaaacgtttctgggacgtggggctgttaaccttctatc
acaagaagagtgtggtccagtatgtaaaaagactcactgagccacacaca
gtcagttgggaggctgaggcagaaaattgcctcaaatttatggtcagcct
gatggggaggagaggtccttggtcttgtgaagattctatgccccagtata
ggggaatgccagggccaggaaagcaagaatggggtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30518037_30519044
seq2: B6Ng01-009K10.b_46_1047

seq1  GAATTCCAACCAGCAGTGTGGGGATATTTCCCTTTTCTCAAACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCAGCAGTGTGGGGATATTTCCCTTTTCTCAAACACACACA  50

seq1  CACACACACACACACACACACACACACACACCCCACACACAAAATCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCCCACACACAAAATCACCA  100

seq1  CTGAGATGCCAAGTGATGAACAATGAGGCATCCTGGGTAAGACATTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCCAAGTGATGAACAATGAGGCATCCTGGGTAAGACATTCCCA  150

seq1  GCCTGCGGAGCAAGTTCCTGCCTTGCAAATGGAAAGGCTGGGCCTTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGGAGCAAGTTCCTGCCTTGCAAATGGAAAGGCTGGGCCTTCATC  200

seq1  ACTGGAAAGGAATGGAGGAGGCCCTGGCTGGTGCTGCCTTGTCAGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAGGAATGGAGGAGGCCCTGGCTGGTGCTGCCTTGTCAGAGCTG  250

seq1  GAAGGGTGCTGAAGAACCACATTAGCATTTCTGAGAACATGAATCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGCTGAAGAACCACATTAGCATTTCTGAGAACATGAATCTGCCT  300

seq1  CGGGTTCCTTATAAATACTGCTTGACTCAGTCAGTATGTGACTGGCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCCTTATAAATACTGCTTGACTCAGTCAGTATGTGACTGGCGCCC  350

seq1  TTGAGACATGAAGTGGCTACTGTTCTTTGGGGCCCTGATTGGGGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATGAAGTGGCTACTGTTCTTTGGGGCCCTGATTGGGGCAGGCA  400

seq1  TCTGCGGCCGAGATAAATTCTTTGGGTGAGTTCTTTTTGAACTTTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGCCGAGATAAATTCTTTGGGTGAGTTCTTTTTGAACTTTATTAG  450

seq1  CATTTAGTTATTTCACCAACTTGGGAGCCAAATGAATTATACTTTAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTATTTCACCAACTTGGGAGCCAAATGAATTATACTTTAGGTG  500

seq1  GTAGGGCTGGGCTTATATCTCCTCTGTCCCACTGTCCTGGACCAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTGGGCTTATATCTCCTCTGTCCCACTGTCCTGGACCAGCCACT  550

seq1  TCTCTCTGAAACCTGACTTCTCCTGTGAAATCAAAGCTGGTGGTCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGAAACCTGACTTCTCCTGTGAAATCAAAGCTGGTGGTCTCCAC  600

seq1  AGATCCTCCCCAGCTCCTTAACCTCCAGCTAATTTTGTATCTTCTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCCCCAGCTCCTTAACCTCCAGCTAATTTTGTATCTTCTTCCTT  650

seq1  CTTTCTAAGGCCAATCCTCTATCTCACCTCTTCCTACACCATT--AATTC  698
      |||||||||||||||||||||||||||||||||||||||||||  | |||
seq2  CTTTCTAAGGCCAATCCTCTATCTCACCTCTTCCTACACCATTTAATTTC  700

seq1  GGAAGAATGGTCAGAAAGGCTTTGGCAGTTTCTG-CCCGGTTTAAA--GG  745
      |||||||||||||||||||||||||||||||||| |||||||||||  ||
seq2  GGAAGAATGGTCAGAAAGGCTTTGGCAGTTTCTGCCCCGGTTTAAAAGGG  750

seq1  GAATAGCTGGGTTCTCAGGCTTTGGGGACAGATAGTCTCTATCATTGGTG  795
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATAGCTGGGTTCTCA-GCTTTGGGGACAGATAGTCTCTATCATTGGTG  799

seq1  AAACCTGTGTATAGCTGGTGCATTCCACAGGCTTCTGGAACAAGGAGATC  845
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  AAACCTGTGTATAGCTGG-GCATTCCACA-GCTTCTGGAACAAGGAGATC  847

seq1  CAATAGGTCATGTCTAGCTGTAGCTACAGAACTG-TACCCCGGGACTCTG  894
      |||||||||||||||| |||||||||||||| || ||| | || ||||||
seq2  CAATAGGTCATGTCTATCTGTAGCTACAGAATTGTTACTCGGGTACTCTG  897

seq1  TGTGCCTGTGCGTGCATAGGCTCACATGCTCCATGCAGACACTGTGGAGT  944
      |||| ||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TGTGTCTGTGCGTGCATAGG-TCACATGCTCCATGCAGACATTGTGGAGT  946

seq1  TGGTGAGGGACAGGAAGTCAGAGAGGCAGGGGTGATGACAGGGATGCTCT  994
      | |||| |||||||||| |||||||    |||||||  || |||||||||
seq2  T-GTGA-GGACAGGAAG-CAGAGAG--TAGGGTGATATCA-GGATGCTCT  990

seq1  GGTACCACCGTAGA  1008
       |||||  ||||||
seq2  -GTACC-TCGTAGA  1002

seq1: chr9_5944390_5944586
seq2: B6Ng01-009K10.g_535_809 (reverse)

seq1  AACCCA-CCCACTCCCAC-TTCCTGGCCCTGACATTGCCCTATACTGGGG  48
      |||||| |||| ||   | |||||||||||| |||| |||||||||||||
seq2  AACCCACCCCATTCTTGCTTTCCTGGCCCTGGCATTCCCCTATACTGGGG  50

seq1  CATAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATT---GATGACC-  94
      ||||||| |||| ||||||||||| |||||||||||  |   | ||||| 
seq2  CATAGAATCTTCACAAGACCAAGGACCTCTCCTCCCCATCAGGCTGACCA  100

seq1  --AACT--AGGCCATCCTCTGCTACA-CCTAGAGTCCAAC----------  129
        || |  |||| ||  |||||  || |||     |||||          
seq2  TAAATTTGAGGCAATTTTCTGCCTCAGCCT----CCCAACTGACTGTGTG  146

seq1  -----CA-TGCATGTTCTT-------------CCTTCTTCTT-------A  153
           || ||  | || ||             |  |||||||       |
seq2  TGGCTCAGTGAGTCTTTTTACATACTGGACCACACTCTTCTTGTGATAGA  196

seq1  AGCTT--------CATGT------------------GGT-----CTGTGA  172
      || ||        || ||                  | |     || | |
seq2  AGGTTAACAGCCCCACGTCCCAGAAACGTTTAAAGAGCTCCTCCCTTTTA  246

seq1  A-----TTATACCTTGGTTATTTGGAGTTT  197
      |     ||| | | ||||||||||| ||||
seq2  AGAGGTTTAAAACCTGGTTATTTGG-GTTT  275