BAC Information

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BAC

Clone NameB6Ng01-009K15
Chromosome9 (Build37)
Map Location 62,871,083 - 63,036,507
singlet/doubletdoublet
Overlap geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5
Upstream genePaqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
Downstream gene2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K15.bB6Ng01-009K15.g
ACCDH845545DH845546
length6391,117
definitionDH845545|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K15, 5' end.DH845546|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,871,083 - 62,871,720)(63,035,382 - 63,036,507)
sequence
gaattcaggttatcaagcttgcagggcagacacttacccagtgaactctt
tccgcagccgaagagattttttacatgccatgccatgtatgcatacataa
aatcaagcaattgataaatgtgaaaaatgaagattagtttggtagtttgt
ttttgttttgtttttggttttttgtttttgtttttttcgagacagggttt
ctctgtatagccctggctgtcctggaactcactctgtagaccaggctggc
ctcgaactcagaaatccacctgcctctgcctcccaagtgctgggattaaa
ggtgtgcgccaccaccaccgcccggctgaagattagttttaaaaatatgt
attgttagtgtgatgtatatggtgcacatatatgggtggggtactacagg
tcttccttaggctaaggactaaggcaagtgggaagtgctgtctctagttg
catatgtaacagaggatggcctaggtggccatcaatgggagcagaggccc
cagtacaggggaatgccagggccaagaagcaggagtgggtgggttaggga
gcagggttggggactttcgggatatcatttgaaatgtaaatgaagaaaat
atctaataaaaattttataataaaaaaaagtgggaagtg
gaattctagaccctcaaaggtggaggtcacatgggcagtggatcaccagc
tgggtagtcactagaagaatttctcttctacagcagggactccagggttg
ctctaaaagtgttacctctccatcaaagcagcactaagccctgtgtgtag
acctctgtccttgagaagatggctcttgaaatgtacttcctgctcaactg
tagggaagtcacttgtgctgagagccatcagatttcttcaggcatcagga
gcctaaaccagaaatcaggagtcagctttaagcctcaggaagtaaagcca
gccatgcaggcagccgtgagccctcagcatgctgccgtgccaggcaatca
gacacggccccaggtctctctgctcctgcaatcttgatcccacgactgaa
gaaccacatgatgcaccctgacctctgtagccaggaaacctcaacaaaac
gtttccaggcagtagacactgtggaggtgcaagacagacccttcagcagg
cttcagacagccacagtcagcttctgccagccaaaacgatggtggaattt
gaaagggggacacactacaaaggcagtggagaaatgtttccatcatgtca
aagatcagattagaaaagacaaaatattacattggatccttaaactcgag
tacagaaaagcaacgtgagatgggtgttctggtcttattttgctatctaa
attgtcggtttaagtgtttcagaagcaaggatgcagagcggtgctgtgta
aacagcttgtatctgcaaaccacagacattgcatgggagacactgtctcc
cactaggttctgtggtagcccaaggtcagcctgggattaacaaggacctg
agccacagcccttcctgtatcacccaaagaaacgacctgccctttgcact
tcgatattttcacatgtaaagtccggaaatgtgccatcttcaggggctct
tgacagggaattctgtgagagtccaaaattacatgcaggattctgtgtgg
catggtgcagattgcatttttttttttcatgtgaaggagaattcatagtt
gtctcagttttttcaaagggccatgactcaaggaatgtcagctccaggct
acttgggaatctgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_62871083_62871720
seq2: B6Ng01-009K15.b_45_683

seq1  GAATTCAGGTTATCAAGCTTGCAGGGCAGACACTTACCCAGTGAACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTATCAAGCTTGCAGGGCAGACACTTACCCAGTGAACTCTT  50

seq1  TCCGCAGCCGAAGAGATTTTTTACATGCCATGCCATGTATGCATACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGCCGAAGAGATTTTTTACATGCCATGCCATGTATGCATACATAA  100

seq1  AATCAAGCAATTGATAAATGTGAAAAATGAAGATTAGTTTGGTAGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCAATTGATAAATGTGAAAAATGAAGATTAGTTTGGTAGTTTGT  150

seq1  TTTTGTTTTGTTTTTGGTTTTTTGTTTTTGTTTTTTTCGAGACAGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTGGTTTTTTGTTTTTGTTTTTTTCGAGACAGGGTTT  200

seq1  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  250

seq1  CTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  300

seq1  GGTGTGCGCCACCACCACCGCCCGGCTGAAGATTAGTTTTAAAAATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCGCCACCACCACCGCCCGGCTGAAGATTAGTTTTAAAAATATGT  350

seq1  ATTGTTAGTGTGATGTATATGGTGCACATATATGGGTGGGGTACTACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTGTGATGTATATGGTGCACATATATGGGTGGGGTACTACAGG  400

seq1  TCTTCCTTAGGCTAAGGACTAAGGCAAGTGGGAAGTGCTGTCTCTAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTAGGCTAAGGACTAAGGCAAGTGGGAAGTGCTGTCTCTAGTTG  450

seq1  CATATGTAACAGAGGATGGCCTAGGTGGCCATCAATGGGAGCAGAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAACAGAGGATGGCCTAGGTGGCCATCAATGGGAGCAGAGGCCC  500

seq1  CAGTACAGGGGAATGCCAGGGCCAAGAAGCAGGAGTGGGTGGGTTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGAATGCCAGGGCCAAGAAGCAGGAGTGGGTGGGTTAGGGA  550

seq1  GCAGGGTTGGGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAAT  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCAGGGTTGGGGACTTTCGGGATATCATTTGAAATGTAAATGAAGAAAAT  600

seq1  ATCTAATAAAAATTATATAA-CAAAAAAAGTGGGAAGTG  638
      |||||||||||||| |||||  |||||||||||||||||
seq2  ATCTAATAAAAATTTTATAATAAAAAAAAGTGGGAAGTG  639

seq1: chr9_63035382_63036507
seq2: B6Ng01-009K15.g_67_1183 (reverse)

seq1  AGAGCAGAATGCCAAGGTAGCCTGGGAGCTGAACAATCACTGAGGGTCAT  50
      |||||||| | |||| ||||||| ||||||| ||| ||  |||  |||||
seq2  AGAGCAGATTCCCAA-GTAGCCT-GGAGCTG-ACATTCCTTGA--GTCAT  45

seq1  GGTCCCTTTGAAAAACTGGTGACAACTATGAATTCCTCCTT-TCATGGAA  99
      || ||||||||||||   | |||||||||||||| ||||||  ||| |||
seq2  GG-CCCTTTGAAAAAACTGAGACAACTATGAATT-CTCCTTCACAT-GAA  92

seq1  AGAAAAAAATGCAAATCTGCA-CATGCCACACAGGATTCTGCATGTAATT  148
      | |||||||||| |||||||| |||||||||||| || ||||||||||||
seq2  AAAAAAAAATGC-AATCTGCACCATGCCACACAGAATCCTGCATGTAATT  141

seq1  TTGGACTCTTCACAGATTTCCCTGGTCAAGGGCCCCTG-AGGTGGCACAT  197
      |||||||| ||||||| |||||| |||||| ||||||| || ||||||||
seq2  TTGGACTC-TCACAGAATTCCCT-GTCAAGAGCCCCTGAAGATGGCACAT  189

seq1  CTCCGGACTTTACATGTGAAAATATCGAAGTGCAAAGGGCAGGTCGTTTC  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGACTTTACATGTGAAAATATCGAAGTGCAAAGGGCAGGTCGTTTC  239

seq1  TTTGGGGTGATACAGGGAAGGGCTGTGGCTCAGGTCCTTGTTAATCCCAG  297
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTT-GGGTGATACA-GGAAGGGCTGTGGCTCAGGTCCTTGTTAATCCCAG  287

seq1  GCTGACCTT-GGCTACCACAGAACCTAGTGGGAGACAGTGTCTCCCATGC  346
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTGGGCTACCACAGAACCTAGTGGGAGACAGTGTCTCCCATGC  337

seq1  AATGTCTGTGGTTTGCAGATACAAGCTGTTTACACAGCACCGCTCTGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTGGTTTGCAGATACAAGCTGTTTACACAGCACCGCTCTGCAT  387

seq1  CCTTGCTTCTGAAACACTTAAACCGACAATTTAGATAGCAAAATAAGACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCTGAAACACTTAAACCGACAATTTAGATAGCAAAATAAGACC  437

seq1  AGAACACCCATCTCACGTTGCTTTTCTGTACTCGAGTTTAAGGATCCAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCCATCTCACGTTGCTTTTCTGTACTCGAGTTTAAGGATCCAAT  487

seq1  GTAATATTTTGTCTTTTCTAATCTGATCTTTGACATGATGGAAACATTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTTGTCTTTTCTAATCTGATCTTTGACATGATGGAAACATTTC  537

seq1  TCCACTGCCTTTGTAGTGTGTCCCCCTTTCAAATTCCACCATCGTTTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCCTTTGTAGTGTGTCCCCCTTTCAAATTCCACCATCGTTTTGG  587

seq1  CTGGCAGAAGCTGACTGTGGCTGTCTGAAGCCTGCTGAAGGGTCTGTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAGCTGACTGTGGCTGTCTGAAGCCTGCTGAAGGGTCTGTCTT  637

seq1  GCACCTCCACAGTGTCTACTGCCTGGAAACGTTTTGTTGAGGTTTCCTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCACAGTGTCTACTGCCTGGAAACGTTTTGTTGAGGTTTCCTGG  687

seq1  CTACAGAGGTCAGGGTGCATCATGTGGTTCTTCAGTCGTGGGATCAAGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGGTCAGGGTGCATCATGTGGTTCTTCAGTCGTGGGATCAAGAT  737

seq1  TGCAGGAGCAGAGAGACCTGGGGCCGTGTCTGATTGCCTGGCACGGCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGCAGAGAGACCTGGGGCCGTGTCTGATTGCCTGGCACGGCAGC  787

seq1  ATGCTGAGGGCTCACGGCTGCCTGCATGGCTGGCTTTACTTCCTGAGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGGGCTCACGGCTGCCTGCATGGCTGGCTTTACTTCCTGAGGCT  837

seq1  TAAAGCTGACTCCTGATTTCTGGTTTAGGCTCCTGATGCCTGAAGAAATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGACTCCTGATTTCTGGTTTAGGCTCCTGATGCCTGAAGAAATC  887

seq1  TGATGGCTCTCAGCACAAGTGACTTCCCTACAGTTGAGCAGGAAGTACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTCTCAGCACAAGTGACTTCCCTACAGTTGAGCAGGAAGTACAT  937

seq1  TTCAAGAGCCATCTTCTCAAGGACAGAGGTCTACACACAGGGCTTAGTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGCCATCTTCTCAAGGACAGAGGTCTACACACAGGGCTTAGTGC  987

seq1  TGCTTTGATGGAGAGGTAACACTTTTAGAGCAACCCTGGAGTCCCTGCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGATGGAGAGGTAACACTTTTAGAGCAACCCTGGAGTCCCTGCTG  1037

seq1  TAGAAGAGAAATTCTTCTAGTGACTACCCAGCTGGTGATCCACTGCCCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAAATTCTTCTAGTGACTACCCAGCTGGTGATCCACTGCCCAT  1087

seq1  GTGACCTCCACCTTTGAGGGTCTAGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  GTGACCTCCACCTTTGAGGGTCTAGAATTC  1117