BAC Information

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BAC

Clone NameB6Ng01-009L03
Chromosome9 (Build37)
Map Location 43,531,843 - 43,687,504
singlet/doubletdoublet
Overlap genePvrl1, LOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L03.bB6Ng01-009L03.g
ACCDH845569DH845570
length1,1511,136
definitionDH845569|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L03, 5' end.DH845570|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,686,339 - 43,687,504)(43,531,843 - 43,532,996)
sequence
gaattcacacaagggcccttccttaaggaagtggccccaggaacccagcc
caacaggctccaccttcaagaaccagctcccacaggcactggggatgtat
agccccgtggtgaagtgcttgcccagcctgcaccaagccctggagagagg
gaaagaaccagctgccaagaacacggcagcattcttcagaaaggattcct
gggaggacaggagggtgggactctaaattcctttttttgacaaccatttg
ggcaagtgtcttgaaccccgaaggttcaactatcacgtgccctctcctat
tcagactcccagaaagtcgcaccggagaaggagccaagggtggtactcag
ctagggagggctcagaggctccattttctccgcagtagaatggcgttgct
tccctgttcttcacggtccctggagctgctcggaacccactcggtggagt
agtgaggtggctatttgggatgaagaggccctggagagctgaccccggct
acatcggagtggagctgggcctgagttctccaaacaggcttcgaaggagt
ggctcctgatagtggtacatttggaagccacctccatcctgaagccagcc
tgcagggtctctcagagccagggcaggaggacttacaggcctcccagagc
tgggacctctcaagttgtctttctgagactgcccacgattccctttccct
gaagacagatgaaatgggcgcacttaggatctgagtgcacatggacggtc
tccactgatggagatgtacggcatgtatgacattcccctgcatcaagcaa
tggagaactgctcccatagttaaaagggcattcataaaaacaaaacaaaa
acaaaaacaaaagctagagagcccttaggatccaatctatctccaacaca
tatcctctggtaccagtgccctctctatatacatatatgacattcatggg
tggacatttcaatttttacctcacagggacgaatcgtagaacaaagctgg
tgaacaattggaaagaagcagtaggatcaagagttaatgcgaccatggga
tttgaggctagcttggcttatcatgtcaactgttgtctggcttgtttagc
tctccatcattagctggggggtgctctagtgacaaagctcaaggtgggca
g
gaattccagggctcttctgttgctggtgatgaggaagaatcagctgaaga
tctgctcagaggcctctgaaagatggtagcgaacactgaaactccctctt
accagcctgcttgggtttatctcttcagaagacaacctcaatccagcact
aggggcttgacccagaacccagaacctaggacagagatagcatagtgccc
cgtacacagagaatgtggccaatacccagctcaactttatcccacaggct
ctgtagaggactctggaaccaggaggattaacttggattttgttgattgg
cctctggcactgtcttgccacaggtgcccaaatgcaaagggtccccaccc
ctcctttctcctgggaaaataaaagcagacaaccagtttgtcccagagtc
agacccacagggaagtaaaaagagctctctagctggtgtggggatgagca
cacagggaggcagaagcagagataagcccgactgagcctcaaggcgattg
acaggctcacaccttccccccaccccccactcctcggtcctcaggctcaa
ccctccagaggtctatgcaaaggacagagcgggtatggagagaaagaagc
ctgtagcaagaggctaagaggaagctccatagaatgaaggctgatattag
aggttcctgtgaatattcaaaagagacagcaagtggaaactggatcctgt
tgaaaggatacccactcctgtctcacacagagcatctgaatgtggccttg
tgctgagctggcatgtttctgcctcccagttggaccacaaaatgggaggg
agcgtccataaagcttcggagttgcctctgtggccctaagctccaccatg
gactgctgcttcacccctttaattggccataattctgtgatttgcaggtc
tcaagcttgctcaaggctcattttctgtcatgatggatggtcagagcagt
agtcatcctcattagcctagagctgactcagcctggccacttgagctgat
agaagcagttctcctgggaatcaagacactcagctcttgctctttttgat
cagagtcttactagatcctggagtctgaaacaggtttattcagagatctg
tatcgatctatcctagcagactgtaagaagaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43686339_43687504
seq2: B6Ng01-009L03.b_46_1196 (reverse)

seq1  CTGCCACACC-TGAGCTTTGTC-CCACAGGCACCCCCAGCTTATAGATGG  48
      ||||| |||| ||||||||||| | | ||   ||||||||| || |||||
seq2  CTGCC-CACCTTGAGCTTTGTCACTAGAGCACCCCCCAGCTAAT-GATGG  48

seq1  AG-GCTAAACAAAGCCAGACAACAGTTGACATGATAGCCCATGCTAGCCT  97
      || ||||||| |||||||||||||||||||||||||  ||| ||||||||
seq2  AGAGCTAAAC-AAGCCAGACAACAGTTGACATGATAAGCCAAGCTAGCCT  97

seq1  CAAAATCACCATGGTCGCATTAAACTCTTGATCCTACTGCCTCTACTTTC  147
      | ||||| ||||||||||||| |||||||||||||||||   || |||||
seq2  C-AAATC-CCATGGTCGCATT-AACTCTTGATCCTACTG---CTTCTTTC  141

seq1  CAATTGTGTCACCCAGCTTCTGTTCTACGATTCTGTCCCTGTGTGGTTAA  197
      ||||||| ||| ||||||| ||||||||||||| ||||||||| || |||
seq2  CAATTGT-TCA-CCAGCTT-TGTTCTACGATTC-GTCCCTGTGAGG-TAA  186

seq1  AAATTGAAATGTCCACCCATTGAATGTCATATATGTATATTGGGGGGGCA  247
      ||||||||||||||||||| |||||||||||||||||||| | | |||||
seq2  AAATTGAAATGTCCACCCA-TGAATGTCATATATGTATATAGAGAGGGCA  235

seq1  CTTGGTTACCAGGGGATGTGTGTTGGGGGATGGGATTGGATCCTGAGGGC  297
      ||  | |||||| |||| |||||| || |||  ||||||||||| |||||
seq2  CT--GGTACCAGAGGATATGTGTT-GGAGAT-AGATTGGATCCTAAGGGC  281

seq1  TCTCTAGCTTTTGTTTTTGTTTTTGTTTTTGTTTTTATG-ATGCCCTTTT  346
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCTCTAGCTTTTGTTTTTGTTTTTG-TTTTGTTTTTATGAATGCCCTTTT  330

seq1  AACTATGGG-GCAGTTCTCCATTGCTTGATGCAGGGGAATGTCATACATG  395
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGGAGCAGTTCTCCATTGCTTGATGCAGGGGAATGTCATACATG  380

seq1  CCGTACATCTCCATCAGTGGAGACCGTCCATGTGCACTCAGATCCTAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACATCTCCATCAGTGGAGACCGTCCATGTGCACTCAGATCCTAAGT  430

seq1  GCGCCCATTTCATCTGTCTTCAGGGAAAGGGAATCGTGGGCAGTCTCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCATTTCATCTGTCTTCAGGGAAAGGGAATCGTGGGCAGTCTCAGA  480

seq1  AAGACAACTTGAGAGGTCCCAGCTCTGGGAGGCCTGTAAGTCCTCCTGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTTGAGAGGTCCCAGCTCTGGGAGGCCTGTAAGTCCTCCTGCC  530

seq1  CTGGCTCTGAGAGACCCTGCAGGCTGGCTTCAGGATGGAGGTGGCTTCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGAGAGACCCTGCAGGCTGGCTTCAGGATGGAGGTGGCTTCCA  580

seq1  AATGTACCACTATCAGGAGCCACTCCTTCGAAGCCTGTTTGGAGAACTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCACTATCAGGAGCCACTCCTTCGAAGCCTGTTTGGAGAACTCA  630

seq1  GGCCCAGCTCCACTCCGATGTAGCCGGGGTCAGCTCTCCAGGGCCTCTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTCCACTCCGATGTAGCCGGGGTCAGCTCTCCAGGGCCTCTTC  680

seq1  ATCCCAAATAGCCACCTCACTACTCCACCGAGTGGGTTCCGAGCAGCTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAATAGCCACCTCACTACTCCACCGAGTGGGTTCCGAGCAGCTCC  730

seq1  AGGGACCGTGAAGAACAGGGAAGCAACGCCATTCTACTGCGGAGAAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCGTGAAGAACAGGGAAGCAACGCCATTCTACTGCGGAGAAAATG  780

seq1  GAGCCTCTGAGCCCTCCCTAGCTGAGTACCACCCTTGGCTCCTTCTCCGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTGAGCCCTCCCTAGCTGAGTACCACCCTTGGCTCCTTCTCCGG  830

seq1  TGCGACTTTCTGGGAGTCTGAATAGGAGAGGGCACGTGATAGTTGAACCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTTTCTGGGAGTCTGAATAGGAGAGGGCACGTGATAGTTGAACCT  880

seq1  TCGGGGTTCAAGACACTTGCCCAAATGGTTGTCAAAAAAAGGAATTTAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTTCAAGACACTTGCCCAAATGGTTGTCAAAAAAAGGAATTTAGA  930

seq1  GTCCCACCCTCCTGTCCTCCCAGGAATCCTTTCTGAAGAATGCTGCCGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCCTCCTGTCCTCCCAGGAATCCTTTCTGAAGAATGCTGCCGTG  980

seq1  TTCTTGGCAGCTGGTTCTTTCCCTCTCTCCAGGGCTTGGTGCAGGCTGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCAGCTGGTTCTTTCCCTCTCTCCAGGGCTTGGTGCAGGCTGGG  1030

seq1  CAAGCACTTCACCACGGGGCTATACATCCCCAGTGCCTGTGGGAGCTGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTTCACCACGGGGCTATACATCCCCAGTGCCTGTGGGAGCTGGT  1080

seq1  TCTTGAAGGTGGAGCCTGTTGGGCTGGGTTCCTGGGGCCACTTCCTTAAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGTGGAGCCTGTTGGGCTGGGTTCCTGGGGCCACTTCCTTAAG  1130

seq1  GAAGGGCCCTTGTGTGAATTC  1166
      |||||||||||||||||||||
seq2  GAAGGGCCCTTGTGTGAATTC  1151

seq1: chr9_43531843_43532996
seq2: B6Ng01-009L03.g_68_1203

seq1  GAATTCCAGGGCTCTTCTGTTGCTGGTGATGAGGAAGAATCAGCTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTCTTCTGTTGCTGGTGATGAGGAAGAATCAGCTGAAGA  50

seq1  TCTGCTCAGAGGCCTCTGAAAGATGGTAGCGAACACTGAAACTCCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCAGAGGCCTCTGAAAGATGGTAGCGAACACTGAAACTCCCTCTT  100

seq1  ACCAGCCTGCTTGGGTTTATCTCTTCAGAAGACAACCTCAATCCAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTGCTTGGGTTTATCTCTTCAGAAGACAACCTCAATCCAGCACT  150

seq1  AGGGGCTTGACCCAGAACCCAGAACCTAGGACAGAGATAGCATAGTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTGACCCAGAACCCAGAACCTAGGACAGAGATAGCATAGTGCCC  200

seq1  CGTACACAGAGAATGTGGCCAATACCCAGCTCAACTTTATCCCACAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACAGAGAATGTGGCCAATACCCAGCTCAACTTTATCCCACAGGCT  250

seq1  CTGTAGAGGACTCTGGAACCAGGAGGATTAACTTGGATTTTGTTGATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGACTCTGGAACCAGGAGGATTAACTTGGATTTTGTTGATTGG  300

seq1  CCTCTGGCACTGTCTTGCCACAGGTGCCCAAATGCAAAGGGTCCCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCACTGTCTTGCCACAGGTGCCCAAATGCAAAGGGTCCCCACCC  350

seq1  CTCCTTTCTCCTGGGAAAATAAAAGCAGACAACCAGTTTGTCCCAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTCCTGGGAAAATAAAAGCAGACAACCAGTTTGTCCCAGAGTC  400

seq1  AGACCCACAGGGAAGTAAAAAGAGCTCTCTAGCTGGTGTGGGGATGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACAGGGAAGTAAAAAGAGCTCTCTAGCTGGTGTGGGGATGAGCA  450

seq1  CACAGGGAGGCAGAAGCAGAGATAAGCCCGACTGAGCCTCAAGGCGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGGCAGAAGCAGAGATAAGCCCGACTGAGCCTCAAGGCGATTG  500

seq1  ACAGGCTCACACCTTCCCCCCACCCCCCACTCCTCGGTCCTCAGGCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCACACCTTCCCCCCACCCCCCACTCCTCGGTCCTCAGGCTCAA  550

seq1  CCCTCCAGAGGTCTATGCAAAGGACAGAGCGGGTATGGAGAGAAAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGAGGTCTATGCAAAGGACAGAGCGGGTATGGAGAGAAAGAAGC  600

seq1  CTGTAGCAAGAGGCTAAGAGGAAGCTCCATAGAATGAAGGCTGATATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAAGAGGCTAAGAGGAAGCTCCATAGAATGAAGGCTGATATTAG  650

seq1  AGGTTCCTGTGAATATTCAAAAGAGACAGCAAGTGGAAACTGGATCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGTGAATATTCAAAAGAGACAGCAAGTGGAAACTGGATCCTGT  700

seq1  TGAAAGGATACCCACCCCTGTCTCACACAGAGCATCTGAATGTGGCCTTG  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAAAGGATACCCACTCCTGTCTCACACAGAGCATCTGAATGTGGCCTTG  750

seq1  TGCTGAGCTGGCATGTTTCTGCCTCCCAGTTGGACCACAAAATGGGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTGGCATGTTTCTGCCTCCCAGTTGGACCACAAAATGGGAGGG  800

seq1  AGCGTCCATAAAGCTCCGGAGTTGCCTCTGTGGCCCTAAGCTCCACCATG  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCGTCCATAAAGCTTCGGAGTTGCCTCTGTGGCCCTAAGCTCCACCATG  850

seq1  GACTGCTGCTTCACCCCTTTAATTGGCCATAATTTCTGTGATTTGCAGGT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACTGCTGCTTCACCCCTTTAATTGGCCATAA-TTCTGTGATTTGCAGGT  899

seq1  CCCAAGCTTGCCCAAGGCCCATTTTCTGTCATGATGGATGGCCAGAAGCA  950
      | ||||||||| |||||| |||||||||||||||||||||| ||| ||||
seq2  CTCAAGCTTGCTCAAGGCTCATTTTCTGTCATGATGGATGGTCAG-AGCA  948

seq1  GTAAGCCATCCCCATTAGCCCAGAGCTGACCCAGCCTGGCCACTTGGAGC  1000
      || || ||||| |||||||| ||||||||| |||||||||||||| ||||
seq2  GT-AGTCATCCTCATTAGCCTAGAGCTGACTCAGCCTGGCCACTT-GAGC  996

seq1  TGATAG-AGCAGGGTCCCCTGGGAAACAAGACACCCAGCTCTTGCCTCTT  1049
      |||||| |||| | || |||||||| |||||||| ||||||||||   ||
seq2  TGATAGAAGCA-GTTCTCCTGGGAATCAAGACACTCAGCTCTTGCTCTTT  1045

seq1  TTGATCAGAGCCTAACCTAGACCCTGGAGCCCAGAAACAGGTTTTATCCA  1099
      |||||||||| || | ||||| |||||||  | |||||||||||  ||  
seq2  TTGATCAGAGTCTTA-CTAGATCCTGGAG-TCTGAAACAGGTTTATTC--  1091

seq1  AGAGGATCTTGTATCAGATTTCTAACCCTGGGCAGGACTGTAAGAGAAGA  1149
      ||| |||| |||||| ||  |||| ||    ||| |||||||  ||||||
seq2  AGA-GATC-TGTATC-GA--TCTATCC--TAGCA-GACTGTA--AGAAGA  1131

seq1  ACTGG  1154
      |||||
seq2  ACTGG  1136