BAC Information

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BAC

Clone NameB6Ng01-010A14
Chromosome9 (Build37)
Map Location 31,983,439 - 32,108,164
singlet/doubletdoublet
Overlap geneGrit
Upstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010A14.bB6Ng01-010A14.g
ACCDH845821DH845822
length1,0321,044
definitionDH845821|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A14, 5' end.DH845822|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,983,439 - 31,984,436)(32,107,110 - 32,108,164)
sequence
gaattccagaaagtctttaatttctttatttctgctttgactctgaagta
gttcagaaggtagttcagtttccatgagtctgtaggctttctgttgtttc
tcttatggctatccagctttaagccatgtgctctgataggatataggagg
ttatttcaactttttttgtacgtgttgagacttgcttttttgaacaaata
tgtggtcaggttttgagaatgttttgtgaggtgcttatttctgtgtatgc
atgtgtgctgacatgaatttatgtgcataacatgcccacaggtgcacaca
gaggtcagaatgggatttcctgaaaggggagttacaagcagttcacacct
gccatgtgggtgctgggaatcaaattccagttgtggggagtaagcacttt
gaactgctgagcctcctctccatccccaggcattaataagccttttaaaa
aggtacttgggggctggagagctggctcagcggttaagagcactgattgc
tcttctagaggtcctgagttcaattcccagcaaccacatggtggctcaca
accatctgtaatcggatctgatgccctcttctggtgtgtctgaggacagc
aacagtatactcatataaataaaataaataaatctaaaaaaatattttaa
aaaagagcatttactgcttaaaaagatactaagtgaaagatgctatattt
tcactgaagctaaaattcattcagatttattattttatcttttctgaaga
ttaaatgtaagtattacagtaatctcagggttcttttgtgtcatagtcac
agaggagacagctggttacaagggaatgcctccctgtctcaaatacctcc
tgaactctgttcccatgcttggcattccaacacagacattcgttaaatct
ctccgctcagctcagtccatttagcagacactgtcactaccacagtggat
tgagtttcacatttggagagcatctggtgtgagcagactgcatggtcaat
gcagcctcagctgaaacttgtacaggttccat
gaattccaatgtagtcaatattcttgactcttggcactgtcacaggtcaa
gccaagactcctagtactttacttctgtcaccaacaagtaagtgcccagc
cccacagcattgctcggcatgtctggcagcggccatcatgtccccaaggc
tacaaaggccagtgaagaaacaagtgtgtcctggagccagatgacctatc
accatgtatatctccatcaaactaaacatgagatttccttccatggtagc
agtagtgccaaaaaatgacgttagctcccagcctccaggtgtagatatca
tcagaccaagtcagcttgttttgcagacagcaccagccagtgactggaca
tggtgggtgcctctgtaagctatcttggattagagcccttcacttcctca
ctgagagttttctgagctctctactatctgagaatcttcctgtctggttt
ttcttcctcctccctccccttccataggcagcagacttcgacagtgatgg
gaataaacctccatccacccacttctgcttagcttgccctttcattcaca
cgcattctcctctgcacatgtccactatgtgcatgtgtgtttgagtgtat
tctttctggaggatccaacgaatgagccatcctgggctttttgcttctag
ccttacctatcaaggtctttgtggcacagtctgggggcctggagtagctt
tattttctttgctagctaaagaatgaaaaggctggaaataactacagtcc
aacaggtcacagtgaagacacctcaagtgctgcaaacaggatcaacagtt
gaggacaggtgcttactgggggtgaggaagctcacagatggagtagacac
agagaaaaagttcctctgcaaagtagaatgggggaggggggactctgact
gaaattcctttctcttcctcttgttgtgtgttgcttgctttcctttcatc
tctggagaatggcctctcctaattaccgttgatcagttgcagaaaaatag
acgatggctggcactcttgtgtacataccctgatgagatcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31983439_31984436
seq2: B6Ng01-010A14.b_40_1034

seq1  GAATTCCAGAAAGTCTTTAATTTCTTTATTTCTGCTTTGACTCTGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGTCTTTAATTTCTTTATTTCTGCTTTGACTCTGAAGTA  50

seq1  GTTCAGAAGGTAGTTCAGTTTCCATGAGTCTGTAGGCTTTCTGTTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGGTAGTTCAGTTTCCATGAGTCTGTAGGCTTTCTGTTGTTTC  100

seq1  TCTTATGGCTATCCAGCTTTAAGCCATGTGCTCTGATAGGATATAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGCTATCCAGCTTTAAGCCATGTGCTCTGATAGGATATAGGAGG  150

seq1  TTATTTCAACTTTTTTTGTACGTGTTGAGACTTGCTTTTTTGAACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAACTTTTTTTGTACGTGTTGAGACTTGCTTTTTTGAACAAATA  200

seq1  TGTGGTCAGGTTTTGAGAATGTTTTGTGAGGTGCTTATTTCTGTGTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAGGTTTTGAGAATGTTTTGTGAGGTGCTTATTTCTGTGTATGC  250

seq1  ATGTGTGCTGACATGAATTTATGTGCATAACATGCCCACAGGTGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGACATGAATTTATGTGCATAACATGCCCACAGGTGCACACA  300

seq1  GAGGTCAGAATGGGATTTCCTGAAAGGGGAGTTACAAGCAGTTCACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAATGGGATTTCCTGAAAGGGGAGTTACAAGCAGTTCACACCT  350

seq1  GCCATGTGGGTGCTGGGAATCAAATTCCAGTTGTGGGGAGTAAGCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGGTGCTGGGAATCAAATTCCAGTTGTGGGGAGTAAGCACTTT  400

seq1  GAACTGCTGAGCCTCCTCTCCATCCCCAGGCATTAATAAGCCTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTGAGCCTCCTCTCCATCCCCAGGCATTAATAAGCCTTTTAAAA  450

seq1  AGGTACTTGGGGGCTGGAGAGCTGGCTCAGCGGTTAAGAGCACTGATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTGGGGGCTGGAGAGCTGGCTCAGCGGTTAAGAGCACTGATTGC  500

seq1  TCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  550

seq1  ACCATCTGTAATCGGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTAATCGGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGC  600

seq1  AACAGTATACTCATATAAATAAAATAAATAAATCTAAAAAAATATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATACTCATATAAATAAAATAAATAAATCTAAAAAAATATTTTAA  650

seq1  AAAAGAGCATTTACTGCTTAAAAAGATACTAAGTGAAAGATGCTATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCATTTACTGCTTAAAAAGATACTAAGTGAAAGATGCTATATTT  700

seq1  TCACTGAAGCTAAAATTCATTCAGATTTATTATTTTATCTTTTCTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGCTAAAATTCATTCAGATTTATTATTTTATCTTTTCTGAAGA  750

seq1  TTAAATGTAAGTATTACAGTAATCTCAGGGTTCTTTTGTGTCATAGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTAAGTATTACAGTAATCTCAGGGTTCTTTTGTGTCATAGTCAC  800

seq1  AGAGGAGACAGCTGGTTACAAGGGAATGCCTCCCTGTCTCAAAATACCTC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGGAGACAGCTGGTTACAAGGGAATGCCTCCCTGTCTC-AAATACCTC  849

seq1  CTGAACTCTGTTCCCATGCTTGGCATTCCAACACAGACATTCGTTAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTGTTCCCATGCTTGGCATTCCAACACAGACATTCGTTAAATC  899

seq1  TCTCCGCTCAGCTCAGTCCATTTAGCAGACACTGTCACTACCACAGTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGCTCAGCTCAGTCCATTTAGCAGACACTGTCACTACCACAGTGGA  949

seq1  TTGAGTATTCACATTTGGAGAGCATCTGGGTGTGAGCAGACTGCATGG  998
      |||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TTGAGT-TTCACATTTGGAGAGCATCT-GGTGTGAGCAGACTGCATGG  995

seq1: chr9_32107110_32108164
seq2: B6Ng01-010A14.g_69_1112 (reverse)

seq1  TCAAGGTCTCATCAGGGTATGTTACACAAGAGTTGCCAGCCAATCGTCCT  50
      ||||| ||||||||||||||| |||||||||| |||||||| ||||| ||
seq2  TCAAGATCTCATCAGGGTATG-TACACAAGAG-TGCCAGCC-ATCGT-CT  46

seq1  ATCTTTCTGCAAACTGATCAACCGTAAATTAGGAGAGGACAATTCTCCAG  100
      || ||||||| ||||||||||| || |||||||||||| | |||||||||
seq2  ATTTTTCTGC-AACTGATCAACGGT-AATTAGGAGAGG-CCATTCTCCAG  93

seq1  AGACTGAAAGGAAAGCAAGCAAACACACAAACAAGAAGAAGAGAAAGGAA  150
      ||| |||||||||||||||| ||||||| ||||||| |||||||||||||
seq2  AGA-TGAAAGGAAAGCAAGC-AACACAC-AACAAGAGGAAGAGAAAGGAA  140

seq1  TTTTCAGTCAGAGTCCCCCCTCCCCCATTCTACTTTGCAGAGGAACTTTT  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCAGTCAGAGTCCCCCCTCCCCCATTCTACTTTGCAGAGGAACTTTT  189

seq1  TCTCTGTGTCTACTCCATCTGTGAGCTTCCTCACCCCCAGTAAGCACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCTACTCCATCTGTGAGCTTCCTCACCCCCAGTAAGCACCTG  239

seq1  TCCTCAACTGTTGATCCTGTTTGCAGCACTTGAGGTGTCTTCACTGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACTGTTGATCCTGTTTGCAGCACTTGAGGTGTCTTCACTGTGAC  289

seq1  CTGTTGGACTGTAGTTATTTCCAGCCTTTTCATTCTTTAGCTAGCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGACTGTAGTTATTTCCAGCCTTTTCATTCTTTAGCTAGCAAAGA  339

seq1  AAATAAAGCTACTCCAGGCCCCCAGACTGTGCCACAAAGACCTTGATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCTACTCCAGGCCCCCAGACTGTGCCACAAAGACCTTGATAGG  389

seq1  TAAGGCTAGAAGCAAAAAGCCCAGGATGGCTCATTCGTTGGATCCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAGAAGCAAAAAGCCCAGGATGGCTCATTCGTTGGATCCTCCAG  439

seq1  AAAGAATACACTCAAACACACATGCACATAGTGGACATGTGCAGAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACACTCAAACACACATGCACATAGTGGACATGTGCAGAGGAGA  489

seq1  ATGCGTGTGAATGAAAGGGCAAGCTAAGCAGAAGTGGGTGGATGGAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTGAATGAAAGGGCAAGCTAAGCAGAAGTGGGTGGATGGAGGTT  539

seq1  TATTCCCATCACTGTCGAAGTCTGCTGCCTATGGAAGGGGAGGGAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCATCACTGTCGAAGTCTGCTGCCTATGGAAGGGGAGGGAGGAGG  589

seq1  AAGAAAAACCAGACAGGAAGATTCTCAGATAGTAGAGAGCTCAGAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACCAGACAGGAAGATTCTCAGATAGTAGAGAGCTCAGAAAACT  639

seq1  CTCAGTGAGGAAGTGAAGGGCTCTAATCCAAGATAGCTTACAGAGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGGAAGTGAAGGGCTCTAATCCAAGATAGCTTACAGAGGCACC  689

seq1  CACCATGTCCAGTCACTGGCTGGTGCTGTCTGCAAAACAAGCTGACTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTCCAGTCACTGGCTGGTGCTGTCTGCAAAACAAGCTGACTTGG  739

seq1  TCTGATGATATCTACACCTGGAGGCTGGGAGCTAACGTCATTTTTTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATATCTACACCTGGAGGCTGGGAGCTAACGTCATTTTTTGGCA  789

seq1  CTACTGCTACCATGGAAGGAAATCTCATGTTTAGTTTGATGGAGATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTACCATGGAAGGAAATCTCATGTTTAGTTTGATGGAGATATAC  839

seq1  ATGGTGATAGGTCATCTGGCTCCAGGACACACTTGTTTCTTCACTGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATAGGTCATCTGGCTCCAGGACACACTTGTTTCTTCACTGGCCT  889

seq1  TTGTAGCCTTGGGGACATGATGGCCGCTGCCAGACATGCCGAGCAATGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTTGGGGACATGATGGCCGCTGCCAGACATGCCGAGCAATGCT  939

seq1  GTGGGGCTGGGCACTTACTTGTTGGTGACAGAAGTAAAGTACTAGGAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGGGCACTTACTTGTTGGTGACAGAAGTAAAGTACTAGGAGTC  989

seq1  TTGGCTTGACCTGTGACAGTGCCAAGAGTCAAGAATATTGACTACATTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGACCTGTGACAGTGCCAAGAGTCAAGAATATTGACTACATTGG  1039

seq1  AATTC  1055
      |||||
seq2  AATTC  1044