MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-011D21
Chromosome	9 (Build37)
Map Location	34,540,625 - 34,541,135
singlet/doublet	singlet
Overlap gene	Kirrel3
Upstream gene	none
Downstream gene	St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846
Link	Open Mouse BAC browser

Click to get alignment info.

name	Kirrel3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67703 MGI:1914953
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	St3gal4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20443 MGI:1316743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dcps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69305 MGI:1916555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tirap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:117149 MGI:2152213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxred1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235169 MGI:2446262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Srpr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67398 MGI:1914648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030004A17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109229 MGI:1924483
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rpusd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71989 MGI:1919239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434394 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434394 MGI:3644422
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 230 ESTs, 9 Proteins

name	Cdon (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57810 MGI:1926387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30959 MGI:1353582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pus3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67049 MGI:1914299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627480 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627480 MGI:3643568
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100042442 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042442
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Svs7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56872 MGI:1930790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm846 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330921 MGI:2685692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kirrel3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892291 GeneID:67703 MGI:1914953
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kin of IRRE like 3 (Drosophila) transcript_id : NM_026324.2

name	St3gal4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361976 GeneID:20443 MGI:1316743
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST3 beta-galactoside alpha-2,3-sialyltransferase 4 transcript_id : NM_009178.3

name	Dcps (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352443 GeneID:69305 MGI:1916555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : decapping enzyme, scavenger transcript_id : NM_027030.2

name	Tirap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16905130 GeneID:117149 MGI:2152213
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-interleukin 1 receptor (TIR) domain-containing adaptor protein transcript_id : NM_054096.1

name	Foxred1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26986604 GeneID:235169 MGI:2446262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FAD-dependent oxidoreductase domain containing 1 transcript_id : NM_172291.1

name	Srpr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27229035 GeneID:67398 MGI:1914648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal recognition particle receptor ('docking protein') transcript_id : NM_026130.1

name	C030004A17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802761 GeneID:109229 MGI:1924483
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030004A17 gene transcript_id : NM_175411.3

name	C030004A17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34787416 GeneID:109229 MGI:1924483
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030004A17 gene transcript_id : NM_194257.1

name	Rpusd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386869 GeneID:71989 MGI:1919239
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA pseudouridylate synthase domain containing 4 transcript_id : NM_028040.2

name	EG434394 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259897 GeneID:434394 MGI:3644422
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 230 ESTs, 9 Proteins product : predicted gene, EG434394 transcript_id : XM_486208.4

name	Cdon (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946653 GeneID:57810 MGI:1926387
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule-related/down-regulated by oncogenes transcript_id : NM_021339.1

name	Ddx25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801077 GeneID:30959 MGI:1353582
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 transcript_id : NM_013932.3

name	Pus3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385846 GeneID:67049 MGI:1914299
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 3 transcript_id : NM_023292.3

name	EG627480 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82929843 GeneID:627480 MGI:3643568
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG627480 transcript_id : XM_892150.1

name	LOC100042442 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259899 GeneID:100042442
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : similar to high mobility group nucleosomal binding domain 2 transcript_id : XM_001478345.1

name	Svs7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922641 GeneID:56872 MGI:1930790
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seminal vesicle secretory protein 7 transcript_id : NM_020264.2

name	Gm846 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352358 GeneID:330921 MGI:2685692
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 846, (NCBI) transcript_id : NM_001033421.2

name	Kirrel3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29824425 GeneID:67703 MGI:1914953
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA] [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030165 - PDZ domain binding [Evidence NAS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030097 - hemopoiesis [Evidence IDA] codon_start : 1 note : X kin of IRRE like 3 product : membrane protein mKirre protein_id : NP_080600.1

name	St3gal4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543703 CCDS:CCDS22956.1 GeneID:20443 MGI:1316743
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : sialyltransferase 4c; ST3Gal IV; sialyltransferase 4C (beta-galactosidase alpha-2,3-sialytransferase); sialyltransferase 4C (beta-galactoside alpha-2,3-sialytransferase) product : ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein_id : NP_033204.2

name	Dcps (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312256 CCDS:CCDS22957.1 GeneID:69305 MGI:1916555
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0000184 - mRNA catabolism, nonsense-mediated decay [Evidence IEA] codon_start : 1 note : mRNA decapping enzyme product : histidine triad protein member 5 protein_id : NP_081306.1

name	Tirap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16905131 GeneID:117149 MGI:2152213
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007257 - activation of JNK activity [Evidence ISS]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS] [Evidence IPI]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence ISS] [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0030099 - myeloid cell differentiation [Evidence IMP]; GO:0009617 - response to bacterium [Evidence ISS] codon_start : 1 note : Toll-like receptor 4 adaptor protein; TIR domain-containing adapter protein; MyD88-adapter-like product : Toll-interleukin 1 receptor domain-containing adaptor protein protein_id : NP_473437.1

name	Foxred1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986605 CCDS:CCDS22958.1 GeneID:235169 MGI:2446262
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : FAD-dependent oxidoreductase domain containing 1 protein_id : NP_758495.1

name	Srpr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229036 CCDS:CCDS22959.1 GeneID:67398 MGI:1914648
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005785 - signal recognition particle receptor complex [Evidence IEA] GO_function : GO:0003924 - GTPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA] codon_start : 1 product : signal recognition particle receptor ('docking protein') protein_id : NP_080406.1

name	C030004A17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425122 CCDS:CCDS22960.1 GeneID:109229 MGI:1924483
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC109229 isoform 2 protein_id : NP_780620.1

name	C030004A17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34787417 CCDS:CCDS22961.1 GeneID:109229 MGI:1924483
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC109229 isoform 1 protein_id : NP_919233.1

name	Rpusd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037279 CCDS:CCDS22962.1 GeneID:71989 MGI:1919239
definition	GO_function : GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : RNA pseudouridylate synthase domain containing 4 protein_id : NP_082316.1

name	EG434394 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51827816 GeneID:434394 MGI:3644422
definition	codon_start : 1 product : hypothetical protein protein_id : XP_486208.1

name	Cdon (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946654 CCDS:CCDS22964.1 GeneID:57810 MGI:1926387
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001708 - cell fate specification [Evidence IGI]; GO:0010172 - embryonic body morphogenesis [Evidence IGI] [Evidence IMP]; GO:0007520 - myoblast fusion [Evidence IMP]; GO:0016202 - regulation of striated muscle development [Evidence ISS]; GO:0007224 - smoothened signaling pathway [Evidence ISS] [Evidence IGI] codon_start : 1 exception : mismatches in translation note : immunoglobulin superfamily member CDO; CAM-related/down-regulated by oncogenes; oncogene-regulated cell adhesion molecule product : cell adhesion molecule-related/down-regulated by oncogenes protein_id : NP_067314.1

name	Ddx25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304995 GeneID:30959 MGI:1353582
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 25; gonadotropin-regulated testicular RNA helicase; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 25 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 protein_id : NP_038960.1

name	Pus3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981121 CCDS:CCDS22965.1 GeneID:67049 MGI:1914299
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IDA] GO_process : GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 exception : mismatches in translation product : pseudouridine synthase 3 protein_id : NP_075781.2

name	EG627480 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82929844 GeneID:627480 MGI:3643568
definition	codon_start : 1 product : similar to small cell adhesion glycoprotein protein_id : XP_897243.1

name	LOC100042442 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259900 GeneID:100042442
definition	codon_start : 1 product : similar to high mobility group nucleosomal binding domain 2 protein_id : XP_001478395.1

name	Svs7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9931973 CCDS:CCDS22967.1 GeneID:56872 MGI:1930790
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : seminal vesicle protein, secretion 7; SVS VII product : caltrin protein_id : NP_064660.1

name	Gm846 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701929 GeneID:330921 MGI:2685692
definition	codon_start : 1 product : hypothetical protein LOC330921 protein_id : NP_001028593.1

clone name	MSMg01-542H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354F09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-433L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148P03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-148P05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-323P09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-215C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-135G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242J20
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name		B6Ng01-011D21.g
ACC		DH846680
length		505
definition		DH846680\|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D21, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence		tgcgttggaacctacctctcgtgaactctcttgtctctctctgttctgca gatgtctatccatgtgaccttgaacaaatgactttgtctttgccaaacct ggcttcttcatttgaacgatgatgatgcctttcttttttccaattgttac catctttaaaaaaatcaaatgaaatacatgtgatatgtgtaatacgaaca catacatactctggaacataatatgtactcaagaaacaatatctttgtca tcgagggtgtcctgtttgcaatactgtctagaaaaaaaaaggaaagtata gagagcctgggagaagttttcaggctgacacagatctggcctgagagtgc agtgagagtctgcttcatttggattttcataatcccccttctttgtttgt ttttagctttctgttcctaaaacttgctagagttgaaacagtacagtgca tttcttggaagaatgatggagacaaaggaactatttgggggggtgtggtg tggtg
quality values		Open. Hide. 43 16 19 13 22 22 13 9 14 16 19 13 11 12 18 15 13 13 13 16 13 13 28 16 14 19 31 16 10 19 31 29 27 19 19 12 14 19 17 19 13 13 18 19 19 13 12 15 12 23 12 24 23 13 13 13 10 27 19 15 12 18 18 26 18 24 15 29 18 20 11 18 18 13 19 16 13 24 19 33 23 10 18 13 13 19 13 18 13 13 13 13 13 11 13 12 12 11 13 13 20 13 12 12 12 11 12 14 17 19 20 19 15 34 19 28 19 13 27 27 27 19 15 19 32 16 18 13 13 13 12 14 12 12 23 19 18 19 19 19 19 11 30 18 36 34 18 13 13 19 19 13 13 12 12 8 11 10 36 27 21 17 23 18 13 11 18 18 17 13 23 19 13 12 23 15 14 14 15 30 12 15 32 17 18 13 18 13 18 13 13 13 13 32 12 11 13 12 13 12 13 13 13 16 13 12 13 13 16 19 19 25 36 27 36 18 13 12 15 10 13 27 30 12 36 13 13 27 18 19 11 17 28 27 36 13 15 13 12 10 13 9 11 23 19 23 29 22 23 13 28 24 23 23 22 38 38 24 36 23 23 23 23 35 18 18 18 23 19 13 18 24 19 19 23 36 13 23 24 23 13 30 31 23 27 23 43 43 36 36 29 52 52 59 59 43 59 61 61 61 61 61 61 61 55 55 55 55 55 61 61 61 55 61 61 55 61 61 61 61 61 61 55 55 61 61 61 55 61 61 61 61 52 61 61 61 55 55 55 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 55 61 61 55 55 55 61 55 61 61 61 55 55 55 55 55 61 61 61 61 61 61 61 50 50 61 61 61 61 61 61 47 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 53 53 61 52 53 50 50 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 37 30 57 53 53 57 57 57 47 47 57 53 57 57 53 57 57 47 57 57 57 57 57 47 57 57 47 42 47 57 57 57 57 57 46 34 47 57 57 47 10 7 7

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_34540625_34541135
seq2: B6Ng01-011D21.g_66_576

seq1  GAATTCTGCTTTGGAACCAACCTCACGTGAACTCGTTTGTCTCTCTCTGT  50
      ||||||||| |||||||| ||||| |||||||||  ||||||||||||||
seq2  GAATTCTGCGTTGGAACCTACCTCTCGTGAACTCTCTTGTCTCTCTCTGT  50

seq1  TCTGCAGATTTCTATCTATGTGACCTTGAACAAATGACTTTGTCTTTGCC  100
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  TCTGCAGATGTCTATCCATGTGACCTTGAACAAATGACTTTGTCTTTGCC  100

seq1  AAACCTGGCTTCTTCATTTGAACAATGATGATGCCTTTCTTTTTTCCAAT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACCTGGCTTCTTCATTTGAACGATGATGATGCCTTTCTTTTTTCCAAT  150

seq1  TGTTACCATCTTTAAAAGAATCAAATGAAATACATGTGATATGTGTAATA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTACCATCTTTAAAAAAATCAAATGAAATACATGTGATATGTGTAATA  200

seq1  CACACACATACATACTCTGGAACATAATAGGTACTCAGGAAACAATAGCT  250
      |  |||||||||||||||||||||||||| ||||||| ||||||||| ||
seq2  CGAACACATACATACTCTGGAACATAATATGTACTCAAGAAACAATATCT  250

seq1  TTGTCATCGAGGGTGTCCTGTTTGCAATACTGTCTAGAAAAAAAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCGAGGGTGTCCTGTTTGCAATACTGTCTAGAAAAAAAAAGGAA  300

seq1  AGTATAGAGAGCCTGGGAGAAGTTTTCAGGCTGACACAGATCTGGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGAGAGCCTGGGAGAAGTTTTCAGGCTGACACAGATCTGGCCTGA  350

seq1  GAGTGCAGTGAGAGTCTGCTTCATTTGGATTTTCATAATCCCCCTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGTGAGAGTCTGCTTCATTTGGATTTTCATAATCCCCCTTCTTT  400

seq1  GTTTGTTTTTAGCTTTCTGTTCCTAAAACTTGCTAGAGTTGAAACAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTAGCTTTCTGTTCCTAAAACTTGCTAGAGTTGAAACAGTAC  450

seq1  AGTGCATTTCTTGGAAGAATGATGGAGACAAAGGAACTATTTGGGGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTTCTTGGAAGAATGATGGAGACAAAGGAACTATTTGGGGGGGT  500

seq1  GTGGTGTGGTG  511
      |||||||||||
seq2  GTGGTGTGGTG  511

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information