BAC Information

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BAC

Clone NameB6Ng01-012D02
Chromosome9 (Build37)
Map Location 39,196,800 - 39,197,772
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1
Downstream geneOlfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D02.bB6Ng01-012D02.g
ACCDH847350DH847351
length1,236971
definitionDH847350|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D02, 5' end.DH847351|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattttcccaccctggaaaagtgtcttagtgctttcctatagtcc
tcctgtggggtgggtaaatgaaggcaaactccatgcattctgactcccca
agaggtcatgcccagtggctgagcaggcactgactgacaccctctatagg
atgtagggttggtaaatttttttttaaccaatctttaggttggcattttg
ttctgttgacagtgtcctttgcttacagaagtttttcagtttcatgaagt
ctcatttgtcaattgatcttagagcctgaaccagtttaaccagcgccatt
taaaatgtcttttttccaatgggtagttttggattctttgtcaaagatca
tgtgaccataagagtgtgggctcatttctaggtcttcaattctattccat
tgatctacctgtttgtctctgtacaaatattatgagattttcaatcactg
ttgctctgtagtttgagaaggtgattctcccagaatttcttttgttgttg
agatttgttttcactatcctggattttttcttattaccgataaaactgag
aattgttctttctatccctataaagaattgagctggaattttgatgggaa
ttgtattgagtctgtagattccttttggtacgagggccatttttacaatg
ttaatcctactgatgcatgggcatgggagatctttccatcttctgaggtc
ttcaatttctttcttcagagacttgaagttcttgtcatatgaatctttca
cttgcttggttagagttacaccaagatattttatattatttgtgactata
atgaagggtgacatgtccataatttcattctcagtccttttatcctttgt
gtagaggaacactactgctttgtttgagttaatttttatatccagatacc
ttgctaaagttgcttatcagctatagaaatcctctggtataatttttggg
gttgcttatatatactattatatcatctgcaaatagtgataccttgactt
ctctttctgatttgtgtccctatgatgcccttttgttgctatgctcgact
tcaagtactaatattaaaataaaatagggaggaatgacagctgattcatc
ctgaatttagtgctttctccaatcccttccttgatttggaggtagggatt
gggttggctgaactctggctttattgtaagtcgtgtgcgtgaagtctgga
cctttccaaggcctgtttagtagacaggaagttgtg
gaattctttaaagcagagaagattttacaattgttgtaatgctgcagtga
cctaaggtcattgtaatttcctgtgtaatatagcaatatttagagagagg
tggtgattaagagattgagagagatctagatggaaggaaatagtgacagg
ggaagaatgtgacagaaaatgtctttgaagcatgatattagaattatttt
acacaatctaatggctcccaaatgcatacctatttttattttttcataat
tttatagtttcttccttaatttttacgtagtatagacttccacatactac
cagaagatatttctatttatgaaattttgcatattgttaaaaactctata
ttaaataagttttgagaggtaaataaataattttaatattttagtgttta
tataagctactcatctatctacagtaaaatgtaaattccaaagacagtaa
tgagtaagaaggtatggccaccagcttcatgtaactgaggttagaatgtg
gaagtttgatatactattagaattcagtgagcttagaaagagagtaggat
ctacttatttacagctgtggaggaaagcttgagaagagcgaagagctaca
gattcaaaaggagctgtttggtacaaattcagtactttcttggtgataag
gttaagactaaacaaaaaatgcaaaacatttattcttcatgaatacgttt
acatatttgccaatttacaaaacttttattaattttgtaaatattttatg
tgatctaagaatgacaatatgaagaaataaattaatacgtacttcatatt
aatgtgtgctttacatctcagggaaaagcaactacaaaggtcactgtctt
ataaattaaagcactatttgttcatcagtggaagtagacgcccttggtcc
tgagaggttacatgccctagtacagggaatgccatgtccaggaagcagga
gtggttgggttggtgagcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39196800_39197772
seq2: B6Ng01-012D02.g_65_1035

seq1  GAATTCTTTAAAGCAGAGAAGATTTTACAATTGTTGTAATGCTGCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGCAGAGAAGATTTTACAATTGTTGTAATGCTGCAGTGA  50

seq1  CCTAAGGTCATTGTAATTTCCTGTGTAATATAGCAATATTTAGAGAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTCATTGTAATTTCCTGTGTAATATAGCAATATTTAGAGAGAGG  100

seq1  TGGTGATTAAGAGATTGAGAGAGATCTAGATGGAAGGAAATAGTGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTAAGAGATTGAGAGAGATCTAGATGGAAGGAAATAGTGACAGG  150

seq1  GGAAGAATGTGACAGAAAATGTCTTTGAAGCATGATATTAGAATTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGTGACAGAAAATGTCTTTGAAGCATGATATTAGAATTATTTT  200

seq1  ACACAATCTAATGGCTCCCAAATGCATACCTATTTTTATTTTTTCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCTAATGGCTCCCAAATGCATACCTATTTTTATTTTTTCATAAT  250

seq1  TTTATAGTTTCTTCCTTAATTTTTACGTAGTATAGACTTCCACATACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTTCTTCCTTAATTTTTACGTAGTATAGACTTCCACATACTAC  300

seq1  CAGAAGATATTTCTATTTATGAAATTTTGCATATTGTTAAAAACTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATATTTCTATTTATGAAATTTTGCATATTGTTAAAAACTCTATA  350

seq1  TTAAATAAGTTTTGAGAGGTAAATAAATAATTTTAATATTTTAGTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGTTTTGAGAGGTAAATAAATAATTTTAATATTTTAGTGTTTA  400

seq1  TATAAGCTACTCATCTATCTACAGTAAAATGTAAATTCCAAAGACAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTACTCATCTATCTACAGTAAAATGTAAATTCCAAAGACAGTAA  450

seq1  TGAGTAAGAAGGTATGGCCACCAGCTTCATGTAACTGAGGTTAGAATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGAAGGTATGGCCACCAGCTTCATGTAACTGAGGTTAGAATGTG  500

seq1  GAAGTTTGATATACTATTAGAATTCAGTGAGCTTAGAAAGAGAGTAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGATATACTATTAGAATTCAGTGAGCTTAGAAAGAGAGTAGGAT  550

seq1  CTACTTATTTACAGCTGTGGAGGAAAGCTTGAGAAGAGCGAAGAGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTTACAGCTGTGGAGGAAAGCTTGAGAAGAGCGAAGAGCTACA  600

seq1  GATTCAAAAGGAGCTGTTTGGTACAAATTCAGTACTTTCTTGGTGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAAGGAGCTGTTTGGTACAAATTCAGTACTTTCTTGGTGATAAG  650

seq1  GTTAAGACTAAACAAAAAATGCAAAACATTTATTCTTCATGAATACGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACTAAACAAAAAATGCAAAACATTTATTCTTCATGAATACGTTT  700

seq1  ACATATTTGCCAATTTACAAAACTTTTATTAATTTTGTAAATATTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGCCAATTTACAAAACTTTTATTAATTTTGTAAATATTTTATG  750

seq1  TGATCTAAGAATGACAATATGAAGAAATAAATTAATACGTACTTCATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAAGAATGACAATATGAAGAAATAAATTAATACGTACTTCATATT  800

seq1  AATGTGTGCTTTACATCTCAGGGAAAAGCAACTACAAAGGTCACTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCTTTACATCTCAGGGAAAAGCAACTACAAAGGTCACTGTCTT  850

seq1  ATAAATTAAAGCACTATTTGTTCATCAGTGGAAGTAGACGCCCTTGGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAGCACTATTTGTTCATCAGTGGAAGTAGACGCCCTTGGTCC  900

seq1  TGAGAAGGTTACATGCCCTAGTACAGGGGAATGCCATGGCCAGGAAGCAG  950
      |||| |||||||||||||||||||| |||||||||||| |||||||||||
seq2  TGAG-AGGTTACATGCCCTAGTACA-GGGAATGCCATGTCCAGGAAGCAG  948

seq1  GAGTGGTTGGGTTGGTGAGCAGG  973
      |||||||||||||||||||||||
seq2  GAGTGGTTGGGTTGGTGAGCAGG  971