BAC Information

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BAC

Clone NameB6Ng01-012D15
Chromosome9 (Build37)
Map Location 89,211,695 - 89,362,357
singlet/doubletdoublet
Overlap genenone
Upstream geneNt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D15.bB6Ng01-012D15.g
ACCDH847376DH847377
length1,229970
definitionDH847376|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D15, 5' end.DH847377|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,361,099 - 89,362,357)(89,211,695 - 89,212,671)
sequence
gaattcagagaggcaggcagaggacacatgagctcataatgtcccatttc
agttctcttggcctggtgggatgtgctcacccatgggcccaggcctcagc
gctctgcttgcactcactcggtcatgcctggggttgattctgcagggagc
actttacaatctcttttctagatcccacaatacagcattgttgcattgtt
ttcagagggatgcttcccttagtgtctgccagctgttgcccaccagcttc
tgtttcacaagcttttatggagactccatattgtagccgcctgcggccaa
actaactgggttcctgagtgggaggccagagctgtatggaaggaaacggc
aaaataatggaggccaagacatgtttctgttcaaggccccaaagtttact
aagagtctgcttatacagtggggaggcccattccctgccaatccattctt
gatgcctgctgccagcctgtaggtgatctgccagatgctatctcctgaat
atctcaagggcctctcagcaggtagcagtgtcttggagaagagcagcagc
aggtgacagaacaatagagccatctaaggctccaccccaggtggtctcat
tctcagtggcagcaaggtcaaagccagcctacttaaggctgggggaagct
acaccatatcccacccttactctccttcaccagccaaaatgtgttggctt
aagggtctgttggcatagcagggtagggagatgacctcctgcttccctga
gaaatggccgaatgtcctcctctgattgcagcagagagtaaattggcttt
cacatatcccagtgcagtacctgtattccagacaacttctgctgactaga
attctaatgagacttctatcctgagagtcatttcctgacagtgtggctac
agtgactttgacactactgtttctagtacctaccacttttagaggctgct
gaatttcccaggaactgttcatcctaagataccaattctcataggatgga
tgcagtggacagccaggaaacagcattagctcttgcataattaagcagtt
tctgtgtgattcaccaagccattcatttgttcctagtcaagggacaagga
attaaaatattgacacctcagatcttcctgtcgatcttcttgaaacatgc
ctgcagccaagttacaggaggccactgatgctgatgctaccaattctaac
ctgcattggaagagttcctggatgagatt
gaattcatttttttttcagctctgtgattcagtgaacgcagaatttatgc
actgcagaaccagtttcatgctgtgtcagacctgttgttgtctgaaccag
tttgaccatttcatttctctcaatacctatgttatacttctaggctccac
ataaaagggcccctttcagccctcagtcctggcacccctagaggcccggt
accttctgttactctgtcctgtttggagttcagtggtggatttttttttt
tttttttttttttttgtagattgaacttcttcttcctggatgctctattt
tctttttcttttcttttcttttcttttcttttttttttttctcttttggt
ttttcgagacagggtttctctgtgtagccctggctgtcctggaactcgct
ctgtaaaccaggctggccttgaactcaaaaatccacctgcctctgccgcc
taagtgctagaattaaaggcatgcgccaccacatccggctctattttcta
tttgatacattttgactacattcagagatgccttgacccctgtgctcttt
gagctccaaatgacatactctggagttgggtaagtaagctctttcccttt
ctgtcatcaccctctttcccaggaatactgtcccttgctagaagtctaga
ccacctcctttcctggcctggaggcacccagacaaccctgcaaaaaaaca
aacaaacaaaaaagcacagtattaagtaggcctgctggtggcagctggca
ggaattcatgtggaaactgtagtgacacaaaatctgttgtgttcgtctaa
aagaaatggactgactaaattctgtagaggcccctccagtagagtcatgt
cttttcctggagcatccctcacttgagagtggatgtagtgcctagtttca
agaccaggaggttctggcaagctactggcagaaatcaggacatgtcttgg
gtggggggctggtggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89361099_89362357
seq2: B6Ng01-012D15.b_45_1273 (reverse)

seq1  AATCT-ATCCAGGAACTCTTCCAAGTGCACAGATTATAGAAATGAGGTAA  49
      ||||| |||||||||||||||||| ||  ||| |  ||||| |  |||| 
seq2  AATCTCATCCAGGAACTCTTCCAA-TG--CAGGT--TAGAATT--GGTA-  42

seq1  GGGCAAACAAGCCCACCCAGGTGGCCTCCTGTAAACCTTGGGCTGCAGGG  99
        || | ||    ||     ||||||||||||||  ||| ||||||| ||
seq2  --GC-ATCAGCATCA-----GTGGCCTCCTGTAA--CTT-GGCTGCA-GG  80

seq1  CATTGTTTCAGGAGAATCTGAGCAGGAGAATCTGAGGTGGTTCATA-TTT  148
      || ||||||| ||  ||| || |||||  ||||||||| ||  ||| |||
seq2  CA-TGTTTCAAGAAGATC-GA-CAGGAAGATCTGAGGT-GTCAATATTTT  126

seq1  AATTCCTTTGTCCCTTGACCTAGGGACCAAATGAATGGCTT-GTGAATCA  197
      |||||| ||||||||||| ||| ||| |||||||||||||| ||||||||
seq2  AATTCC-TTGTCCCTTGA-CTA-GGAACAAATGAATGGCTTGGTGAATCA  173

seq1  CACAGAAACTGCCTTATATATGCAAGAGCCTAATTGCTGTTTTCTTGGCC  247
      ||||||||||| ||||  |||||||||| |||| |||||||| ||  | |
seq2  CACAGAAACTG-CTTAATTATGCAAGAG-CTAA-TGCTGTTTCCT--GGC  218

seq1  TGTCCACTGCATCCATCCTATTGAGAATTGGTATCTTAGGATGAACAGTT  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCCACTGCATCCATCCTA-TGAGAATTGGTATCTTAGGATGAACAGTT  267

seq1  CCTGGGAAATTCAGCAGCCTCTAAAAGTGGTAGGTACTAGAAACAGTAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAATTCAGCAGCCTCTAAAAGTGGTAGGTACTAGAAACAGTAGT  317

seq1  GTCAAAGTCACTGTAGCCACACTGTCAGGAAATGACTCTCAGGATAGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTCACTGTAGCCACACTGTCAGGAAATGACTCTCAGGATAGAAG  367

seq1  TCTCATTAGAATTCTAGTCAGCAGAAGTTGTCTGGAATACAGGTACTGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAGAATTCTAGTCAGCAGAAGTTGTCTGGAATACAGGTACTGCA  417

seq1  CTGGGATATGTGAAAGCCAATTTACTCTCTGCTGCAATCAGAGGAGGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATATGTGAAAGCCAATTTACTCTCTGCTGCAATCAGAGGAGGACA  467

seq1  TTCGGCCATTTCTCAGGGAAGCAGGAGGTCATCTCCCTACCCTGCTATGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCCATTTCTCAGGGAAGCAGGAGGTCATCTCCCTACCCTGCTATGC  517

seq1  CAACAGACCCTTAAGCCAACACATTTTGGCTGGTGAAGGAGAGTAAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACCCTTAAGCCAACACATTTTGGCTGGTGAAGGAGAGTAAGGGT  567

seq1  GGGATATGGTGTAGCTTCCCCCAGCCTTAAGTAGGCTGGCTTTGACCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGGTGTAGCTTCCCCCAGCCTTAAGTAGGCTGGCTTTGACCTTG  617

seq1  CTGCCACTGAGAATGAGACCACCTGGGGTGGAGCCTTAGATGGCTCTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGAGAATGAGACCACCTGGGGTGGAGCCTTAGATGGCTCTATT  667

seq1  GTTCTGTCACCTGCTGCTGCTCTTCTCCAAGACACTGCTACCTGCTGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCACCTGCTGCTGCTCTTCTCCAAGACACTGCTACCTGCTGAGA  717

seq1  GGCCCTTGAGATATTCAGGAGATAGCATCTGGCAGATCACCTACAGGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGAGATATTCAGGAGATAGCATCTGGCAGATCACCTACAGGCTG  767

seq1  GCAGCAGGCATCAAGAATGGATTGGCAGGGAATGGGCCTCCCCACTGTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGCATCAAGAATGGATTGGCAGGGAATGGGCCTCCCCACTGTAT  817

seq1  AAGCAGACTCTTAGTAAACTTTGGGGCCTTGAACAGAAACATGTCTTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACTCTTAGTAAACTTTGGGGCCTTGAACAGAAACATGTCTTGGC  867

seq1  CTCCATTATTTTGCCGTTTCCTTCCATACAGCTCTGGCCTCCCACTCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTATTTTGCCGTTTCCTTCCATACAGCTCTGGCCTCCCACTCAGG  917

seq1  AACCCAGTTAGTTTGGCCGCAGGCGGCTACAATATGGAGTCTCCATAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTTAGTTTGGCCGCAGGCGGCTACAATATGGAGTCTCCATAAAA  967

seq1  GCTTGTGAAACAGAAGCTGGTGGGCAACAGCTGGCAGACACTAAGGGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAAACAGAAGCTGGTGGGCAACAGCTGGCAGACACTAAGGGAAG  1017

seq1  CATCCCTCTGAAAACAATGCAACAATGCTGTATTGTGGGATCTAGAAAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTGAAAACAATGCAACAATGCTGTATTGTGGGATCTAGAAAAG  1067

seq1  AGATTGTAAAGTGCTCCCTGCAGAATCAACCCCAGGCATGACCGAGTGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAAAGTGCTCCCTGCAGAATCAACCCCAGGCATGACCGAGTGAG  1117

seq1  TGCAAGCAGAGCGCTGAGGCCTGGGCCCATGGGTGAGCACATCCCACCAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAGAGCGCTGAGGCCTGGGCCCATGGGTGAGCACATCCCACCAG  1167

seq1  GCCAAGAGAACTGAAATGGGACATTATGAGCTCATGTGTCCTCTGCCTGC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGAACTGAAATGGGACATTATGAGCTCATGTGTCCTCTGCCTGC  1217

seq1  CTCTCTGAATTC  1259
      ||||||||||||
seq2  CTCTCTGAATTC  1229

seq1: chr9_89211695_89212671
seq2: B6Ng01-012D15.g_64_1033

seq1  GAATTCATTTTTTTTTCAGCTCTGTGATTCAGTGAACGCAGAATTTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTTTCAGCTCTGTGATTCAGTGAACGCAGAATTTATGC  50

seq1  ACTGCAGAACCAGTTTCATGCTGTGTCAGACCTGTTGTTGTCTGAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAACCAGTTTCATGCTGTGTCAGACCTGTTGTTGTCTGAACCAG  100

seq1  TTTGACCATTTCATTTCTCTCAATACCTATGTTATACTTCTAGGCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATTTCATTTCTCTCAATACCTATGTTATACTTCTAGGCTCCAC  150

seq1  ATAAAAGGGCCCCTTTCAGCCCTCAGTCCTGGCACCCCTAGAGGCCCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGCCCCTTTCAGCCCTCAGTCCTGGCACCCCTAGAGGCCCGGT  200

seq1  ACCTTCTGTTACTCTGTCCTGTTTGGAGTTCAGTGGTGGATTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTTACTCTGTCCTGTTTGGAGTTCAGTGGTGGATTTTTTTTTT  250

seq1  TTTTTTTTTTTTTTTGTAGATTGAACTTCTTCTTCCTGGATGCTCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGTAGATTGAACTTCTTCTTCCTGGATGCTCTATTT  300

seq1  TCTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTCTCTTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTCTCTTTTGGT  350

seq1  TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCT  400

seq1  CTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCGCC  450
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTAAACCAGGCTGGCCTTGAACTCAAAAATCCACCTGCCTCTGCCGCC  450

seq1  TAAGTGCTAGAATTAAAGGCATGCGCCACCACATCCGGCTCTATTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTAGAATTAAAGGCATGCGCCACCACATCCGGCTCTATTTTCTA  500

seq1  TTTGATACATTTTGACTACATTCAGAGATGCCTTGACCCCTGTGCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATACATTTTGACTACATTCAGAGATGCCTTGACCCCTGTGCTCTTT  550

seq1  GAGCTCCAAATGACATACTCTGGAGTTGGGTAAGTAAGCTCTTTCCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAAATGACATACTCTGGAGTTGGGTAAGTAAGCTCTTTCCCTTT  600

seq1  CTGTCATCACCCTCTTTCCCAGGAATACTGTCCCTTGCTAGAAGTCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCACCCTCTTTCCCAGGAATACTGTCCCTTGCTAGAAGTCTAGA  650

seq1  CCACCTCCTTTCCTGGCCTGGAGGCACCCAGACAACCCTGCAAAAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTTTCCTGGCCTGGAGGCACCCAGACAACCCTGCAAAAAAACA  700

seq1  AACAAACAAAAAAGCACAGTATTAAGTAGGCCTGCTGGTGGCAGCTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAGCACAGTATTAAGTAGGCCTGCTGGTGGCAGCTGGCA  750

seq1  GGAATTCATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAA  800

seq1  AAGAAATGGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGT  850

seq1  CTTTTCCTGGAGCATCCCTCAACTTGAGAGTGGATGTAGTGCCTAGTTTC  900
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  CTTTTCCTGGAGCATCCCTC-ACTTGAGAGTGGATGTAGTGCCTAGTTT-  898

seq1  CAAGACCAAGGAGGTTTCTGGCAAGCTACTGGCAAGAAAAATCAGGACAT  950
      ||||||| |||||| ||||||||||||||||||   | ||||||||||||
seq2  CAAGACC-AGGAGG-TTCTGGCAAGCTACTGGC---AGAAATCAGGACAT  943

seq1  GTCTTGGGTGGGGGGCTGGTGGGGAGG  977
      |||||||||||||||||||||||||||
seq2  GTCTTGGGTGGGGGGCTGGTGGGGAGG  970