BAC Information

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BAC

Clone NameB6Ng01-012E20
Chromosome9 (Build37)18 (Build37)
Map Location 78,173,517 - 78,174,00241,479,312 - 41,480,408
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383
Downstream geneOmt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E20.bB6Ng01-012E20.g
ACCDH847434DH847435
length1,1131,080
definitionDH847434|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E20, 5' end.DH847435|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,173,517 - 78,174,002)(41,479,312 - 41,480,408)
sequence
gaattcatgaaggtggcatttgagttggaccttaaaggatgcaaggccat
ttatggtctaaatataaatactcccatttccagagagtagtctcagtcag
atgaactttcatgaatggaaatatgaaacacagtagttctctgctgtgtc
ctgtgctcacaggacaagagttcttggtaaaagaggaagcagttctacat
tatttactaccatgtgttaaaggaataaaaaatgcataagttgaaaaaaa
ttgatggctaagatttctccctaccgatgttgaattggtttcccaactag
atcctatcagacagggtggtcactttgcattttccatcctacatggttgc
caggcaactatctcctatgatggaagatgccattagagcagcctttccaa
atgccttttctgctgagcattagtgccttgaagaaaaaaggaatctacag
acagagaaaggaggacagtgacagagcctagactcccagactccaagact
ccaaaactgtttgttaccaatgcctgcttgtcttctaaaagaatttgcaa
attcctttagaaaatgcacacacacacacacacacacaaacacacacaca
attttcttttttttatatatatatatatttttccattttttattaggtat
ttaactcatttacatttccaatgctataccaaaagtcccccatatccacc
cacccccactcccctgcccacccactccccctttttggccctggtgttcc
cctatactggggcatataaagtttgcaagtccaatgggcctctctttcca
gtgatggccgactaggccatcttttgatatatatgcagctagagtcaaga
gctccgggggtactggttagttcataatgttgttccacctatagggttgc
agatccctttagctccttgggctactttctctagctcctccattggggag
ccctatgatccatccattagctgactgggagcatcgacttctgtgtttgc
taggccccggcatagtctcacaagagacagctacatctgggtctttcata
aatcatgctaggtgtatgcatgggtgtcagcgttggatgctgattatggg
gtgggatcctgga
gaattcaggcaaggcagcccagctaggggaaattagtccagaggcagaca
acagagtcagagtcagcctctgctccagttgttggggtacccacatgaag
accaagctgcacatctgcaacaaatgtataagggagctaggtccagtcca
ttcatgctttttggttggtggttcagtctctgtgaacccctacaggcctg
ggtgaccatagattctttctctcattactgtcattgaggaagagttctga
gaggcacctagctaccaaccacaacgtgtaaacactgtgctgctccagaa
gatgcagggaactgaatcctctgtgagttgcaataatgtttcctgttttt
ctctatgaggatgacagagtagtaaccatgccatggcttttgccaccatg
caaaccttgccctaaaagggttcaatttctcaccacattggcactgctct
cactcatgagatgtataatttgctccttatgatgcacgtggtcttttgga
gccacaacagagccatcattgctctctgtcaacctacttgctctgtccta
aggatgccatgtctcaactcagatctgatactctagcctcaactcctggg
tatagagctggagacatgttgaatggggcctcggcagatgttcaagggca
tgagatgcaggtgagaaatgaatgtacgtctttcgagttccagtccagcc
acataaggggaaacaagataaaacaaaacataaacctttgagtgcaatga
ctgtgcatgcctagggcaatgctttcatccgtgcatcaattcctatgatt
ttgaagtagctctctgaagggccatgacaaaaatgtttgtgtagccatca
ccagaatcaacagggaaaagtgacataattaattagtaatgactgtcatg
ggcattaacgtgagggagagtgacacaatgacatgcttgctggttacagc
catttttccaccttaccaggatcacaaagagagaaacgctgagtttctat
ccatttcctttactgcactctctaaattctctttctcgaagaacttcata
tccttgtctttttctctacatgacaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78173517_78174002
seq2: B6Ng01-012E20.b_673_1158 (reverse)

seq1  TCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATA  50
      ||||||   |||||||||||||||||||| ||||||||||||  ||||||
seq2  TCCAGGATCCCACCCCATAATCAGCATCC-AACGCTGACACCCATGCATA  49

seq1  CA-CTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGA  99
      || |||||| |||||   ||||| ||||||||||||||||||||||||||
seq2  CACCTAGCATGATTT--ATGAAA-GACCCAGATGTAGCTGTCTCTTGTGA  96

seq1  GACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTA  149
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GACTATGCCGGGGCCTAGCAAACACAGAAGTCGATGCTCCCAGTCAGCTA  146

seq1  ATGGATGGATCATAGGGCT-CCCAATGGAGGAGCTAGAGAAAGTAG-CCA  197
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  ATGGATGGATCATAGGGCTCCCCAATGGAGGAGCTAGAGAAAGTAGCCCA  196

seq1  AGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTA  246

seq1  ACCAGTA-CCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATG  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATG  296

seq1  GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTT  346

seq1  ATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGG  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCCAGTATAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGG  396

seq1  GCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGG  446

seq1  AAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAA  486
      ||||||||||||| ||||||||||||||||||||||||||
seq2  AAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAA  486

seq1: chr18_41479312_41480408
seq2: B6Ng01-012E20.g_66_1145

seq1  GAATTCAGGCAAGGCAGCCCAGCTAGGGGAAATTAGTCCAGAGGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAAGGCAGCCCAGCTAGGGGAAATTAGTCCAGAGGCAGACA  50

seq1  ACAGAGTCAGAGTCAGCCTCTGCTCCAGTTGTTGGGGTACCCACATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCAGAGTCAGCCTCTGCTCCAGTTGTTGGGGTACCCACATGAAG  100

seq1  ACCAAGCTGCACATCTGCAACAAATGTATAAGGGAGCTAGGTCCAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGCACATCTGCAACAAATGTATAAGGGAGCTAGGTCCAGTCCA  150

seq1  TTCATGCTTTTTGGTTGGTGGTTCAGTCTCTGTGAACCCCTACAGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTTTTTGGTTGGTGGTTCAGTCTCTGTGAACCCCTACAGGCCTG  200

seq1  GGTGACCATAGATTCTTTCTCTCATTACTGTCATTGAGGAAGAGTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCATAGATTCTTTCTCTCATTACTGTCATTGAGGAAGAGTTCTGA  250

seq1  GAGGCACCTAGCTACCAACCACAACGTGTAAACACTGTGCTGCTCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCTAGCTACCAACCACAACGTGTAAACACTGTGCTGCTCCAGAA  300

seq1  GATGCAGGGAACTGAATCCTCTGTGAGTTGCAATAATGTTTCCTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGGAACTGAATCCTCTGTGAGTTGCAATAATGTTTCCTGTTTTT  350

seq1  CTCTATGAGGATGACAGAGTAGTAACCATGCCATGGCTTTTGCCACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAGGATGACAGAGTAGTAACCATGCCATGGCTTTTGCCACCATG  400

seq1  CAAACCTTGCCCTAAAAGGGTTCAATTTCTCACCACATTGGCACTGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTGCCCTAAAAGGGTTCAATTTCTCACCACATTGGCACTGCTCT  450

seq1  CACTCATGAGATGTATAATTTGCTCCTTATGATGCACGTGGTCTTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGAGATGTATAATTTGCTCCTTATGATGCACGTGGTCTTTTGGA  500

seq1  GCCACAACAGAGCCATCATTGCTCTCTGTCAACCTACTTGCTCTGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACAGAGCCATCATTGCTCTCTGTCAACCTACTTGCTCTGTCCTA  550

seq1  AGGATGCCATGTCTCAACTCAGATCTGATACTCTAGCCTCAACTCCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCCATGTCTCAACTCAGATCTGATACTCTAGCCTCAACTCCTGGG  600

seq1  TATAGAGCTGGAGACATGTTGAATGGGGCCTCGGCAGATGTTCAAGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCTGGAGACATGTTGAATGGGGCCTCGGCAGATGTTCAAGGGCA  650

seq1  TGAGATGCAGGTGAGAAATGAATGTACGTCTTTCGAGTTCCAGTCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCAGGTGAGAAATGAATGTACGTCTTTCGAGTTCCAGTCCAGCC  700

seq1  ACATAAGGGGAAACAAGATAAAACAAAACATAAACCTTTGAGTGCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGGGAAACAAGATAAAACAAAACATAAACCTTTGAGTGCAATGA  750

seq1  CTGTGCATGCCTAGGGCAATGCTTTCATCCGTGCATCAATTCCTATGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGCCTAGGGCAATGCTTTCATCCGTGCATCAATTCCTATGATT  800

seq1  TTGAAGTAGCTCTCTGAAGGGCCATGACAAAAATGTTTGTGTAGCCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAGCTCTCTGAAGGGCCATGACAAAAATGTTTGTGTAGCCATCA  850

seq1  CCAGAATCAACAGGGAAAAGTGACATAATTAATTAGTAATGACTGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCAACAGGGAAAAGTGACATAATTAATTAGTAATGACTGTCATG  900

seq1  GGCATTAACGTGAGGGAGAGTGACACAAATGACATGCTTGCTGGTTTACA  950
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GGCATTAACGTGAGGGAGAGTGACAC-AATGACATGCTTGCTGG-TTACA  948

seq1  GCCAATTTTTTCCACCTTACCAGGATCACAAAGAGAGAAACGCTGAGGTT  1000
      ||||  |||||||||||||||||||||||||||||||||||||||||  |
seq2  GCCA--TTTTTCCACCTTACCAGGATCACAAAGAGAGAAACGCTGAG--T  994

seq1  TTCTATCCATTTCCTTTACCTGCACTCTTCTAAAAATTCCTCTTTTCTCG  1050
      |||||||||||||||||| |||||||| ||||||   | ||| |||||||
seq2  TTCTATCCATTTCCTTTA-CTGCACTC-TCTAAA---TTCTC-TTTCTCG  1038

seq1  AAGAAACTTCATATCCCTTGTCTTTTTCTCCTACCAATGACAATGAC  1097
      ||| |||||||||| |||||||||||||| ||||  |||||||||||
seq2  AAG-AACTTCATAT-CCTTGTCTTTTTCT-CTAC--ATGACAATGAC  1080