BAC Information

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BAC

Clone NameB6Ng01-012F07
Chromosome9 (Build37)
Map Location 69,332,726 - 69,459,262
singlet/doubletdoublet
Overlap geneAnxa2
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913
Downstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012F07.bB6Ng01-012F07.g
ACCDH847454DH847455
length1,1211,051
definitionDH847454|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F07, 5' end.DH847455|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,332,726 - 69,333,867)(69,458,217 - 69,459,262)
sequence
gaattcagtaagatgctcactcaggctagcgtacccagggttggctaaca
atggtgagacagagcttacccacttccttccctgaccatctctttcttcg
ttggccttgtctagattaacatgtgaaatgctgtattcatttgggaatga
ggttatggctcacccggggtggagaggaaactgatggtccttgttttttt
gttttttgttttccctgcctccagttttagaatgcaccaagagctaggtc
tgatggtccttcttgtttttcccctacagggcagacgagcagaggatggc
tcagttattgactacgagctgattgaccaggatgcccgggtatgtgccaa
gcttcatggcgtgtgtatttggaggggttgtatctcacacaactatttct
ttatgtacaatgaataacctcaaactaacatttgttatctctcagatcct
ctgggtcagggatggagactgggttgatcagataattctggctcaaggtc
tctcatatggttgtagacaagacaagttggttaggactgtaattactgag
agcatggccaggtcaaagggttctttcccacgtggctcatgtgtgactta
ctgttggcaagagatgttagcactcctccacgtaggcctccacgggctgc
ttgaatgtccctgatgacattgccgctgccctccctagagcgagtgatcc
aagagggatccagaagccctcatgctcttatgactccgtctcaggtgtca
cacattcttgtcatattctgatcattagaagtgtgtccatgaatccagcc
cacagccgtgggaggggtaaaactaagtgatgtcccttctaagggaggaa
tgggccttttaaagcctcagcccatctgagaatatgaggtttgtttccag
gaaccgtagttgtaatgccaggtcagttaccagctctgtacccacttccc
gttggctcatcagctctgatcacagacgtgctagttctgacactagctgg
tagagccgagcagaatgagtagcccaccagctagagctccctgctcactc
agtgagaaaggggcccgttgccttctcataagctataagaccgctgcaaa
ctaggattgcctcacccagag
gaattcacactgttcctttaccacaagcaaaactgtaaggcaggactcca
tcaagccctgaatggaaagttaaagaaaattatcattatcatttattctt
tcagagacctcatttaaacatagtccaggaaaggaaaagaaaggatacat
tattgcacgtgctcaatttgccatgaatcaagtgaaaaaaacaatttcaa
gttctcaggcagaagagatttcaaggtgagtttccttttaaacagaccgc
gacattcacgttctttcataagctgggcctcaccttagtattgctaactg
acccccagtcttcacataggaaggttagcaaagaggaatgagtttctaaa
cagtcacacctctctccccatgaggaaattttattctattttatatttgt
gtgtgggtgggaatgggtagagacaagagatagctcatcacctgactaaa
atcccaccctcagagctcagtcatcactctgaaagactttaaagaaccga
atggttttcttccttctttcagcctcccttccctcctgccctccccctct
tccttccttttctttttaaaattctttcaatttttgaatttttgagacag
ggtcttgttatgcagttcaagctggccttcaacttccttcatggtccagg
gatgactttgacctcccatcactctgtctctgtcacagggaaagctgagg
tggtggacacacaccaccacacatggctctgataaatctcctaaggcgtg
ctattccactttctgacccctggccccacattttgccatccaactgccac
ccatgttccttttcctatgagtacccaaatgagtctccattgcagttgga
gagcttcttcttctctccttttcaaaaccggcactcagcaacattctcac
gatttgctattggcagaactaaaaagacacaggcaaagtgcatagaaaag
ctgcctatgggatgtccagcctcaaatggacacttctacaacccacccct
actctcaggacttccggaacatcgagaagaaatggtgtggaattcttgta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69332726_69333867
seq2: B6Ng01-012F07.b_47_1167

seq1  GAATTCAGTAAGATGCTCACTCAGGCTAGCGTACCCAGGGTTGGCTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGATGCTCACTCAGGCTAGCGTACCCAGGGTTGGCTAACA  50

seq1  ATGGTGAGACAGAGCTTACCCACTTCCTTCCCTGACCATCTCTTTCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGACAGAGCTTACCCACTTCCTTCCCTGACCATCTCTTTCTTCG  100

seq1  TTGGCCTTGTCTAGATTAACATGTGAAATGCTGTATTCATTTGGGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGTCTAGATTAACATGTGAAATGCTGTATTCATTTGGGAATGA  150

seq1  GGTTATGGCTCACCCGGGGTGGAGAGGAAACTGATGGTCCTTGTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGCTCACCCGGGGTGGAGAGGAAACTGATGGTCCTTGTTTTTTT  200

seq1  GTTTTTTGTTTTCCCTGCCTCCAGTTTTAGAATGCACCAAGAGCTAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTCCCTGCCTCCAGTTTTAGAATGCACCAAGAGCTAGGTC  250

seq1  TGATGGTCCTTCTTGTTTTTCCCCTACAGGGCAGACGAGCAGAGGATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCCTTCTTGTTTTTCCCCTACAGGGCAGACGAGCAGAGGATGGC  300

seq1  TCAGTTATTGACTACGAGCTGATTGACCAGGATGCCCGGGTATGTGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTGACTACGAGCTGATTGACCAGGATGCCCGGGTATGTGCCAA  350

seq1  GCTTCATGGCGTGTGTATTTGGAGGGGTTGTATCTCACACAACTATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGGCGTGTGTATTTGGAGGGGTTGTATCTCACACAACTATTTCT  400

seq1  TTATGTACAATGAATAACCTCAAACTAACATTTGTTATCTCTCAGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAATGAATAACCTCAAACTAACATTTGTTATCTCTCAGATCCT  450

seq1  CTGGGTCAGGGATGGAGACTGGGTTGATCAGATAATTCTGGCTCAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCAGGGATGGAGACTGGGTTGATCAGATAATTCTGGCTCAAGGTC  500

seq1  TCTCATATGGTTGTAGACAAGACAAGTTGGTTAGGACTGTAATTACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATGGTTGTAGACAAGACAAGTTGGTTAGGACTGTAATTACTGAG  550

seq1  AGCATGGCCAGGTCAAAGGGTTCTTTCCCACGTGGCTCATGTGTGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCCAGGTCAAAGGGTTCTTTCCCACGTGGCTCATGTGTGACTTA  600

seq1  CTGTTGGCAAGAGATGTTAGCACTCCTCCACGTAGGCCTCCACGGGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCAAGAGATGTTAGCACTCCTCCACGTAGGCCTCCACGGGCTGC  650

seq1  TTGAATGTCCCTGATGACATTGCCGCTGCCCTCCCTAGAGCGAGTGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTCCCTGATGACATTGCCGCTGCCCTCCCTAGAGCGAGTGATCC  700

seq1  AAGAGGGATCCAGAAGCCCTCATGCTCTTATGACTCCGTCTCAGGTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGATCCAGAAGCCCTCATGCTCTTATGACTCCGTCTCAGGTGTCA  750

seq1  CACATTCTTGTCATATTCTGATCATTAGAAGTGTGTCCATGAATCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTGTCATATTCTGATCATTAGAAGTGTGTCCATGAATCCAGCC  800

seq1  CACAGCCGTGGGAGGGGTAAAACTAAGTGATGTCCCTTCTAAGGGAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCGTGGGAGGGGTAAAACTAAGTGATGTCCCTTCTAAGGGAGGAA  850

seq1  TGGGCCTTTTAAAGCCTCAGCCCATCTGAGAATATGAGGTTTGTTTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTTTAAAGCCTCAGCCCATCTGAGAATATGAGGTTTGTTTCCAG  900

seq1  GAACCGTAGTTGTAATGCCAGGGTCAGTTACCAGCTCTGTACCCACTTCC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACCGTAGTTGTAATGCCA-GGTCAGTTACCAGCTCTGTACCCACTTCC  949

seq1  CGTTGGCTCATTCAGGCTCTGATTCCACAGACGTGCTAGGTCCTGACACT  1000
      |||||||||| ||| ||||||||  ||||||||||||| || ||||||||
seq2  CGTTGGCTCA-TCA-GCTCTGAT--CACAGACGTGCTA-GTTCTGACACT  994

seq1  AAGCTGGTAGGGAAGCCGGAGCAG-ATGAGGTAGGCACACCAGGCTAGGA  1049
       |||||||||   |||| |||||| |||| ||| || ||||| |||||  
seq2  -AGCTGGTAG---AGCC-GAGCAGAATGA-GTA-GCCCACCA-GCTAG--  1034

seq1  AGGCTCCCTGCTCCACTCAGTGGGGACAGGGGCCCGTGGCTTCCTCATAA  1099
        |||||||||| |||||||| | || |||||||||| || | ||||| |
seq2  -AGCTCCCTGCT-CACTCAGT-GAGAAAGGGGCCCGTTGCCTTCTCAT-A  1080

seq1  AGCTAATTTAGACAGCTGCAAACTAGGTATGCCTCACCCAGAG  1142
      |||||  | |||| |||||||||||||  ||||||||||||||
seq2  AGCTA--TAAGACCGCTGCAAACTAGGATTGCCTCACCCAGAG  1121

seq1: chr9_69458217_69459262
seq2: B6Ng01-012F07.g_65_1115 (reverse)

seq1  TTACAAG-ATTCC-CACCCTGTCTTCTCTGATGTTCCGGGAGTCCTGAGT  48
      ||||||| ||||| |||| | ||||||| |||||||||| ||||||||| 
seq2  TTACAAGAATTCCACACCATTTCTTCTC-GATGTTCCGGAAGTCCTGAGA  49

seq1  GTAGGGGTTGGGTTGTAGATGTGT-CATTTGAGGCTGGACATCCCATAGG  97
      ||||||| ||||||||||| |||| |||||||||||||||||||||||||
seq2  GTAGGGG-TGGGTTGTAGAAGTGTCCATTTGAGGCTGGACATCCCATAGG  98

seq1  CAGCTCTTCTCTGCACTTTGCCTGTGTCTTTCTTAGTTCTGCC-ATAGC-  145
      ||||| |||| |||||||||||||||||||| ||||||||||| ||||| 
seq2  CAGCTTTTCTATGCACTTTGCCTGTGTCTTT-TTAGTTCTGCCAATAGCA  147

seq1  AATCGTGAGAATGTTGCTG-GTGCCGGTTTTG-AAAGGAGAGAAGAGGAA  193
      ||||||||||||||||||| |||||||||||| ||||||||||||| |||
seq2  AATCGTGAGAATGTTGCTGAGTGCCGGTTTTGAAAAGGAGAGAAGAAGAA  197

seq1  GCTCTCCAACTGCATTGGAGGCTCATCTGGGTACTCATAGGAAAAGGAAC  243
      |||||||||||||| ||||| ||||| |||||||||||||||||||||||
seq2  GCTCTCCAACTGCAATGGAGACTCATTTGGGTACTCATAGGAAAAGGAAC  247

seq1  ATGGGTGGCAGTTGGATGGCAAAATGTGGGGCCAGGGGTCAGAAAGTGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGCAGTTGGATGGCAAAATGTGGGGCCAGGGGTCAGAAAGTGGA  297

seq1  ATAGCACGCCTTAGGAGATTTATCAGAGCCATGTGTGGTGGTGTGTGTCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACGCCTTAGGAGATTTATCAGAGCCATGTGTGGTGGTGTGTGTCC  347

seq1  ACCACCTCAGCTTTCCCTGTGACAGAGACAGAGTGATGGGAGGTCAAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCAGCTTTCCCTGTGACAGAGACAGAGTGATGGGAGGTCAAAGT  397

seq1  CAT-CCTGGACCATGAAGGAAGTTGAAGGCCAGCTTGAACTGCATAACAA  442
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGACCATGAAGGAAGTTGAAGGCCAGCTTGAACTGCATAACAA  447

seq1  GACCCTGTCTCAAAAATTCAAAAATTGAAAGAATTTTAAAAAGAAAAGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTCAAAAATTCAAAAATTGAAAGAATTTTAAAAAGAAAAGGA  497

seq1  AGGAAGAGGGGGAGGGCAGGAGGGAAGGGAGGCTGAAAGAAGGAAGAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGGGAGGGCAGGAGGGAAGGGAGGCTGAAAGAAGGAAGAAAA  547

seq1  CCATTCGGTTCTTTAAAGTCTTTCAGAGTGATGACTGAGCTCTGAGGGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGGTTCTTTAAAGTCTTTCAGAGTGATGACTGAGCTCTGAGGGTG  597

seq1  GGATTTTAGTCAGGTGATGAGCTATCTCTTGTCTCTACCCATTCCCACCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAGTCAGGTGATGAGCTATCTCTTGTCTCTACCCATTCCCACCC  647

seq1  ACACACAAATATAAAATAGAATAAAATTTCCTCATGGGGAGAGAGGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAATATAAAATAGAATAAAATTTCCTCATGGGGAGAGAGGTGTG  697

seq1  ACTGTTTAGAAACTCATTCCTCTTTGCTAACCTTCCTATGTGAAGACTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAGAAACTCATTCCTCTTTGCTAACCTTCCTATGTGAAGACTGG  747

seq1  GGGTCAGTTAGCAATACTAAGGTGAGGCCCAGCTTATGAAAGAACGTGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTTAGCAATACTAAGGTGAGGCCCAGCTTATGAAAGAACGTGAA  797

seq1  TGTCGCGGTCTGTTTAAAAGGAAACTCACCTTGAAATCTCTTCTGCCTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCGGTCTGTTTAAAAGGAAACTCACCTTGAAATCTCTTCTGCCTGA  847

seq1  GAACTTGAAATTGTTTTTTTCACTTGATTCATGGCAAATTGAGCACGTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAAATTGTTTTTTTCACTTGATTCATGGCAAATTGAGCACGTGC  897

seq1  AATAATGTATCCTTTCTTTTCCTTTCCTGGACTATGTTTAAATGAGGTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTATCCTTTCTTTTCCTTTCCTGGACTATGTTTAAATGAGGTCT  947

seq1  CTGAAAGAATAAATGATAATGATAATTTTCTTTAACTTTCCATTCAGGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAATAAATGATAATGATAATTTTCTTTAACTTTCCATTCAGGGC  997

seq1  TTGATGGAGTCCTGCCTTACAGTTTTGCTTGTGGTAAAGGAACAGTGTGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGTCCTGCCTTACAGTTTTGCTTGTGGTAAAGGAACAGTGTGA  1047

seq1  ATTC  1046
      ||||
seq2  ATTC  1051