BAC Information

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BAC

Clone NameB6Ng01-012I15
Chromosome9 (Build37)
Map Location 122,804,941 - 122,931,019
singlet/doubletdoublet
Overlap geneZfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42
Upstream geneCcbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874
Downstream geneTgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I15.bB6Ng01-012I15.g
ACCDH847605DH847606
length989280
definitionDH847605|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I15, 5' end.DH847606|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,804,941 - 122,805,926)(122,930,771 - 122,931,019)
sequence
gaattcacactggtgaaaaaccttatggatgtaatgagtgtgggaaggtc
tttagttatagttctagccttatggttcatcagagaacccatactggtga
aaagccctataaatgtaaagattgcatgaaagcctttggtgacagttcac
agcttattgtgcaccagagggttcacactggtgagaagccttatgaatgt
gctgaatgtgggaaagcctttagtcagcggtccacctttaatcaccacca
gcgaattcacaatgtcgcgaagccctcaagtcggcttcaggcagtatctt
aaggcatggtttcctgagacaaaataaagaattctgagttaatttgttta
gaagaaggaagtcgggcagtgatcccagcatttgagaggcagaggcaggt
atatctctgagtttgaggccagtctagtgcacagagtgagttctgggaca
gccaagggtacacagagaaaccttgtcttgaaaagccccccccccatagg
atatttatcttattctctttcaaatgagtgctttctatctggtattcgat
cacaaaggcaggataataagaaccatatattttatttacttctagctttt
tcttttttaaaactatcttaaaatatatctcattaaaaatatatctcatt
tttaaactttgtgttccacaatttgtgattttcaagcacagagataatac
ctcctctacttcattctagcctatgcatttcctcgtttatttaaagactg
actgtaagactctcatcacttttacttcttgcctacagctctctgcattt
actttgtccctgatacttttttatgtggatagatgtttttgcctacgtga
atggacgaggaccacttaggtgccttgtatctacagaagaaggtcatcag
actacagctgtcagccaccctgttgatggtcgacatcctgagtcttctgg
caagcaccaatgctctgaactactgagccatctctctaa
tctgatgcagaagctccgcaggcgctcagtccgaactcttgccaaggaca
ggaagagatgggcaaccggttatctcaccttaggtgtcacgtgctaaaaa
agctatggcaaggggacttaaactgagaggtgggcttcgaggtcctcccc
caggaggcagtgcctaaaaccaggtggtccaacatgggcgcaggcgggaa
cccaggttaagccgccctcctccccgccccgccccgccctccctcgctcc
gtccctcccttccttccttcctcccttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122804941_122805926
seq2: B6Ng01-012I15.b_43_1031

seq1  GAATTCACACTGGTGAAAAACCTTATGGATGTAATGAGTGTGGGAAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGTGAAAAACCTTATGGATGTAATGAGTGTGGGAAGGTC  50

seq1  TTTAGTTATAGTTCTAGCCTTATGGTTCATCAGAGAACCCATACTGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATAGTTCTAGCCTTATGGTTCATCAGAGAACCCATACTGGTGA  100

seq1  AAAGCCCTATAAATGTAAAGATTGCATGAAAGCCTTTGGTGACAGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTATAAATGTAAAGATTGCATGAAAGCCTTTGGTGACAGTTCAC  150

seq1  AGCTTATTGTGCACCAGAGGGTTCACACTGGTGAGAAGCCTTATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTGTGCACCAGAGGGTTCACACTGGTGAGAAGCCTTATGAATGT  200

seq1  GCTGAATGTGGGAAAGCCTTTAGTCAGCGGTCCACCTTTAATCACCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGTGGGAAAGCCTTTAGTCAGCGGTCCACCTTTAATCACCACCA  250

seq1  GCGAATTCACAATGTCGCGAAGCCCTCAAGTCGGCTTCAGGCAGTATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTCACAATGTCGCGAAGCCCTCAAGTCGGCTTCAGGCAGTATCTT  300

seq1  AAGGCATGGTTTCCTGAGACAAAATAAAGAATTCTGAGTTAATTTGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGGTTTCCTGAGACAAAATAAAGAATTCTGAGTTAATTTGTTTA  350

seq1  GAAGAAGGAAGTCGGGCAGTGATCCCAGCATTTGAGAGGCAGAGGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGTCGGGCAGTGATCCCAGCATTTGAGAGGCAGAGGCAGGT  400

seq1  ATATCTCTGAGTTTGAGGCCAGTCTAGTGCACAGAGTGAGTTCTGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGAGTTTGAGGCCAGTCTAGTGCACAGAGTGAGTTCTGGGACA  450

seq1  GCCAAGGGTACACAGAGAAACCTTGTCTTGAAAAGCCCCCCCCCCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGTACACAGAGAAACCTTGTCTTGAAAAGCCCCCCCCCCATAGG  500

seq1  ATATTTATCTTATTCTCTTTCAAATGAGTGCTTTCTATCTGGTATTCGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCTTATTCTCTTTCAAATGAGTGCTTTCTATCTGGTATTCGAT  550

seq1  CACAAAGGCAGGATAATAAGAACCATATATTTTATTTACTTCTAGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCAGGATAATAAGAACCATATATTTTATTTACTTCTAGCTTTT  600

seq1  TCTTTTTTAAAACTATCTTAAAATATATCTCATTAAAAATATATCTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAACTATCTTAAAATATATCTCATTAAAAATATATCTCATT  650

seq1  TTTAAACTTTGTGTTCCACAATTTGTGATTTTCAAGCACAGAGATAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTTGTGTTCCACAATTTGTGATTTTCAAGCACAGAGATAATAC  700

seq1  CTCCTCTACTTCATTCTAGCCTATGCATTTCCTCGTTTATTTAAAGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACTTCATTCTAGCCTATGCATTTCCTCGTTTATTTAAAGACTG  750

seq1  ACTGTAAGACTCTCATCACTTTTACTTCTTGCCTACAGCTCTCTGCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGACTCTCATCACTTTTACTTCTTGCCTACAGCTCTCTGCATTT  800

seq1  ACTTTGTCCCTGATAC-TTTTTATGTGGATAGATG-TTTTGCCTACGTGT  848
      |||||||||||||||| |||||||||||||||||| ||||||||||||| 
seq2  ACTTTGTCCCTGATACTTTTTTATGTGGATAGATGTTTTTGCCTACGTGA  850

seq1  ATGGACGAGGACCACTTAGGTGCCTTGTATCTACAGAAG-AGGTCATCAG  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGACGAGGACCACTTAGGTGCCTTGTATCTACAGAAGAAGGTCATCAG  900

seq1  ACTACAGCTGTCAGCCACCCTG-TGATGGT-GACATCCTGAGTCCTCTGG  945
      |||||||||||||||||||||| ||||||| ||||||||||||| |||||
seq2  ACTACAGCTGTCAGCCACCCTGTTGATGGTCGACATCCTGAGTCTTCTGG  950

seq1  CAGAGCAGCCAGTGCTCTGAACTACTGAGCCATCTCTCTAA  986
      || |||| ||| |||||||||||||||||||||||||||||
seq2  CA-AGCA-CCAATGCTCTGAACTACTGAGCCATCTCTCTAA  989

seq1: chr9_122930771_122931019
seq2: B6Ng01-012I15.g_66_314 (reverse)

seq1  GGGAGGGCGGGGCGGGGCGGGGAGGAGGGCGGCTTAACCTGGGTTCCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCGGGGCGGGGCGGGGAGGAGGGCGGCTTAACCTGGGTTCCCGC  50

seq1  CTGCGCCCATGTTGGACCACCTGGTTTTAGGCACTGCCTCCTGGGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCCATGTTGGACCACCTGGTTTTAGGCACTGCCTCCTGGGGGAGG  100

seq1  ACCTCGAAGCCCACCTCTCAGTTTAAGTCCCCTTGCCATAGCTTTTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGAAGCCCACCTCTCAGTTTAAGTCCCCTTGCCATAGCTTTTTTAG  150

seq1  CACGTGACACCTAAGGTGAGATAACCGGTTGCCCATCTCTTCCTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGACACCTAAGGTGAGATAACCGGTTGCCCATCTCTTCCTGTCCTT  200

seq1  GGCAAGAGTTCGGACTGAGCGCCTGCGGAGCTTCTGCATCAGAGAATTC  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGTTCGGACTGAGCGCCTGCGGAGCTTCTGCATCAGAGAATTC  249