BAC Information

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BAC

Clone NameB6Ng01-012K04
Chromosome9 (Build37)
Map Location 83,513,597 - 83,622,126
singlet/doubletdoublet
Overlap geneLOC100039222
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2
Downstream geneElovl4, Ttk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K04.bB6Ng01-012K04.g
ACCDH847675DH847676
length1,0071,202
definitionDH847675|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K04, 5' end.DH847676|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,513,597 - 83,514,602)(83,620,870 - 83,622,126)
sequence
gaattccacacccctaagccccttaccccataaaaacccctagctttcga
gcctcgtggccgacatccattatctcctgtgtgggatgtatgtcagtccg
gagctctgtcattagactacctcgtgtaattacgtcaaggccttttcgtg
attctttgggtgcacgctggattgggaattgagtgggggtttccccacta
agttctatcaaaacaaagaaacaaaaatccaacaatttccccctagggaa
acccccactgaatgtatcttctctggccatttaatgcctcacatccccta
ggttggctagcaggaaatgattcatgtgttgctctctcatttgggattag
aaagtgggctctcatcacatgaatttttattcttccttttccccacatta
ttccagtgttgaatttatgctgtttgagaaagtactagaatgactattca
caactaattagtattcactgaaataactgacctgaacttcatggttttaa
aaataacctcattaagcactttgacatttgagtgtgtttaactttcctgg
gaaaggtgcagtttttcatggtagtaatttgcccttcctcataaagtttt
gttgctttcgttattttcagaagtgtgttctagaattttccataatctaa
ttttaatcacctaaagtatgacattcaaatgtaatagaaagagttgaccc
ccagaagttttgttttttaataggaaagcttatagatttactctctccaa
caaaccgactataatttattggttgcaaccatttttcctccctctgggct
gacaaaataaatctcgtgcttttaagtcactgacgccctttaattcttcc
taggatttacttcacttatgagacttcatccagcttaatcaaactggatt
cctaggacagtgtttcaatgtcagtgctcccgggatctgtccagtgtctt
ataaggtattgtggattgaatagcaaagacttggatggttgaacacttct
gaatata
gaattccaactgctaggatattccaatgtcaattcatttcgacattacct
attaattgaaagacaccttaccgatgacagatacgcatctccacccttct
cgaacttgatagctgcattcatttctcttttgttttcccagttctggaga
tcaaacccaggacctaatgcaaatcaggagactgctctaacacctggcat
aatttactatccatcttctttttatttcaaggtaggttctcaaaccaaag
gcgaacagactagccttcaactgtggcctcctaccttaggcccgcccctg
aataaaattcatcttgataaatcatctcgagccagctggaggaagggctt
gggtttttccctcagcatgaaatgccagtgtttaccagttttcactggtg
agatggagcagtctgtggagaagcatttatttttatgtgtgtgtgggtgt
gcacatcctccggcagggggcaattggatcacttagaactggattagcag
tacatctgagaccccagacaggggtgctgggaactgaactcgggccctct
aggtgcatggtcttaactgctgagccatctcttcagctcctgtccagtgc
atttttaactgatgcaatagaaactacatctctgctttgtggacagcacc
actttcttctgcaaagaagagacatacatttacacggctctgacctcagc
aagtcttatattcaatacttctccctttccccgcctgggaaaatgtccag
gggaaggtggtaaataaaatttaccaggtctggaagccctgttggtggcc
acgagagggctcggtgaagatatccttggcggccactagagggagacgag
agctcaagtcaagtggctgctcagtcgcgtggagcgtcccagcccctggc
tcagcaatcttggagaatatccatttggaatgctctcgaaaacaacagca
tgaaacacagaaaataaaaaaagccgatcagataaatacgagacattaag
tgaatttcagaaaacaacaaaccaactaggtagttatttgttctctcgac
ccccaccccggctgaaactaattaatagattcacgtcagatgctgcattg
gcaatctggaatcataattccgtcagctactgaagagataatccgtagtc
ggcgtatgcaacattacgtacgtcgattcggtagctgaacagatgtttgc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83513597_83514602
seq2: B6Ng01-012K04.b_46_1052

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50

seq1  GCCTCGTGGCCGACATCCATTATCTCCTGTGTGGGATGTATGTCAGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGGCCGACATCCATTATCTCCTGTGTGGGATGTATGTCAGTCCG  100

seq1  GAGCTCTGTCATTAGACTACCTCGTGTAATTACGTCAAGGCCTTTTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGTCATTAGACTACCTCGTGTAATTACGTCAAGGCCTTTTCGTG  150

seq1  ATTCTTTGGGTGCACGCTGGATTGGGAATTGAGTGGGGGTTTCCCCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGGTGCACGCTGGATTGGGAATTGAGTGGGGGTTTCCCCACTA  200

seq1  AGTTCTATCAAAACAAAGAAACAAAAATCCAACAATTTCCCCCTAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATCAAAACAAAGAAACAAAAATCCAACAATTTCCCCCTAGGGAA  250

seq1  ACCCCCACTGAATGTATCTTCTCTGGCCATTTAATGCCTCACATCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACTGAATGTATCTTCTCTGGCCATTTAATGCCTCACATCCCCTA  300

seq1  GGTTGGCTAGCAGGAAATGATTCATGTGTTGCTCTCTCATTTGGGATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTAGCAGGAAATGATTCATGTGTTGCTCTCTCATTTGGGATTAG  350

seq1  AAAGTGGGCTCTCATCACATGAATTTTTATTCTTCCTTTTCCCCACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGCTCTCATCACATGAATTTTTATTCTTCCTTTTCCCCACATTA  400

seq1  TTCCAGTGTTGAATTTATGCTGTTTGAGAAAGTACTAGAATGACTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGTTGAATTTATGCTGTTTGAGAAAGTACTAGAATGACTATTCA  450

seq1  CAACTAATTAGTATTCACTGAAATAACTGACCTGAACTTCATGGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATTAGTATTCACTGAAATAACTGACCTGAACTTCATGGTTTTAA  500

seq1  AAATAACCTCATTAAGCACTTTGACATTTGAGTGTGTTTAACTTTCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCTCATTAAGCACTTTGACATTTGAGTGTGTTTAACTTTCCTGG  550

seq1  GAAAGGTGCAGTTTTTCATGGTAGTAATTTGCCCTTCCTCATAAAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGCAGTTTTTCATGGTAGTAATTTGCCCTTCCTCATAAAGTTTT  600

seq1  GTTGCTTTCGTTATTTTCAGAAGTGTGTTCTAGAATTTTCCATAATCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTCGTTATTTTCAGAAGTGTGTTCTAGAATTTTCCATAATCTAA  650

seq1  TTTTAATCACCTAAAGTATGACATTCAAATGTAATAGAAAGAGTTGA-CC  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTAATCACCTAAAGTATGACATTCAAATGTAATAGAAAGAGTTGACCC  700

seq1  CCAGAAGTTTTGTTTTTTAATAGGAAAGCTTATAGATTTACTCTCTCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTTTGTTTTTTAATAGGAAAGCTTATAGATTTACTCTCTCCAA  750

seq1  CAAACCGACTATAATTTATTGGTTGCAACCATTTTTCTTCCCTCTGGGCT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAACCGACTATAATTTATTGGTTGCAACCATTTTTCCTCCCTCTGGGCT  800

seq1  GACAAAATAAATCTCGTGCTTTTAGGTCACTGACGCC--TTTATTCTTCC  847
      |||||||||||||||||||||||| ||||||||||||  || ||||||||
seq2  GACAAAATAAATCTCGTGCTTTTAAGTCACTGACGCCCTTTAATTCTTCC  850

seq1  TAGGATTTACTTCACTTATGAGAC-TCATCCGAGCTT-ATCAAACT-GAT  894
      |||||||||||||||||||||||| |||||| ||||| |||||||| |||
seq2  TAGGATTTACTTCACTTATGAGACTTCATCC-AGCTTAATCAAACTGGAT  899

seq1  T-CTAGGACAGTGTTTCAATGTCAGTGCTCCCGGGATCTGTCCAGTGTAC  943
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTAGGACAGTGTTTCAATGTCAGTGCTCCCGGGATCTGTCCAGTGT-C  948

seq1  TTAATAAGGTATTTGTGGATTG-ATAGCAAAAGACTTGGATGTTTGAGCA  992
      || |||||||| |||||||||| ||||| ||||||||||||| |||| ||
seq2  TT-ATAAGGTA-TTGTGGATTGAATAGC-AAAGACTTGGATGGTTGAACA  995

seq1  CCTTCTGAAATATA  1006
       |||||| ||||||
seq2  -CTTCTG-AATATA  1007

seq1: chr9_83620870_83622126
seq2: B6Ng01-012K04.g_67_1268 (reverse)

seq1  ATGCAAACATTTTGTTCTAGTTTCACCGAATAGGGGAACAGGTAAGGTAA  50
      ||||||||| | ||||| || |  ||||||| |  | ||       ||||
seq2  ATGCAAACA-TCTGTTC-AGCT--ACCGAATCGACGTAC-------GTAA  39

seq1  TGCTGCCTTTCAGCCGCGACCCTAACAGTGATTTTATTCTTTCAGGTAGC  100
      || ||| |     |  ||||    || |     ||||   |||| |||||
seq2  TGTTGCAT----ACGCCGAC---TACGG----ATTATCTCTTCA-GTAGC  77

seq1  TTGACCGGTGATTATGATCTCCAGATTTGCCCCAAAAGTGCAGCACTCTG  150
       ||||  |  |||||||| |||||| |||||     | ||||||| ||||
seq2  -TGAC--GGAATTATGAT-TCCAGA-TTGCC-----AATGCAGCA-TCTG  116

seq1  ACGTGAATCTTATTTAAATATAGGTTTCAGGCGGGGGTGGGGGTCGGGAG  200
      ||||||||||   |||| ||   |||||| || ||||||||||||| |||
seq2  ACGTGAATCT--ATTAATTA---GTTTCA-GCCGGGGTGGGGGTCGAGAG  160

seq1  AGACAAATAACTACCTTAGTTTTGGTTTTGTTGTTTTTCTGAAATTCACC  250
      | ||||||||||||| |||||   | ||||||| ||||||||||||||| 
seq2  A-ACAAATAACTACC-TAGTT---GGTTTGTTG-TTTTCTGAAATTCAC-  203

seq1  TTTAATTGGTCCTCCGTATTTTATCTGATCGGCTTTTTTTATTTTCTGTG  300
       |||||  |||   |||| |||||||||||||||||||||||||||||||
seq2  -TTAAT--GTC--TCGTA-TTTATCTGATCGGCTTTTTTTATTTTCTGTG  247

seq1  TTTCATGCTGTTTGTTTTCGAGAGCATTCCAAATGGATTATTCTCCAAGA  350
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATGCTG-TTGTTTTCGAGAGCATTCCAAATGGA-TATTCTCCAAGA  295

seq1  TTGCTGAGCCAGGGGCTGGGACGCTCCACGCGACTGAGCAGCCACTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCCAGGGGCTGGGACGCTCCACGCGACTGAGCAGCCACTTGAC  345

seq1  TTGAGCTCTCGTCTCCCTCTAGTGGCCGCCAAGGATATCTTCACCGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCTCGTCTCCCTCTAGTGGCCGCCAAGGATATCTTCACCGAGCC  395

seq1  CTCTCGTGGCCACCAACAGGGCTTCCAGACCTGGTAAATTTTATTTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGGCCACCAACAGGGCTTCCAGACCTGGTAAATTTTATTTACCA  445

seq1  CCTTCCCCTGGACATTTTCCCAGGCGGGGAAAGGGAGAAGTATTGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTGGACATTTTCCCAGGCGGGGAAAGGGAGAAGTATTGAATAT  495

seq1  AAGACTTGCTGAGGTCAGAGCCGTGTAAATGTATGTCTCTTCTTTGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGCTGAGGTCAGAGCCGTGTAAATGTATGTCTCTTCTTTGCAGA  545

seq1  AGAAAGTGGTGCTGTCCACAAAGCAGAGATGTAGTTTCTATTGCATCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGTGCTGTCCACAAAGCAGAGATGTAGTTTCTATTGCATCAGT  595

seq1  TAAAAATGCACTGGACAGGAGCTGAAGAGATGGCTCAGCAGTTAAGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCACTGGACAGGAGCTGAAGAGATGGCTCAGCAGTTAAGACCA  645

seq1  TGCACCTAGAGGGCCCGAGTTCAGTTCCCAGCACCCCTGTCTGGGGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTAGAGGGCCCGAGTTCAGTTCCCAGCACCCCTGTCTGGGGTCTC  695

seq1  AGATGTACTGCTAATCCAGTTCTAAGTGATCCAATTGCCCCCTGCCGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACTGCTAATCCAGTTCTAAGTGATCCAATTGCCCCCTGCCGGAG  745

seq1  GATGTGCACACCCACACACACATAAAAATAAATGCTTCTCCACAGACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCACACCCACACACACATAAAAATAAATGCTTCTCCACAGACTGC  795

seq1  TCCATCTCACCAGTGAAAACTGGTAAACACTGGCATTTCATGCTGAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCACCAGTGAAAACTGGTAAACACTGGCATTTCATGCTGAGGGA  845

seq1  AAAACCCAAGCCCTTCCTCCAGCTGGCTCGAGATGATTTATCAAGATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAGCCCTTCCTCCAGCTGGCTCGAGATGATTTATCAAGATGAA  895

seq1  TTTTATTCAGGGGCGGGCCTAAGGTAGGAGGCCACAGTTGAAGGCTAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAGGGGCGGGCCTAAGGTAGGAGGCCACAGTTGAAGGCTAGTC  945

seq1  TGTTCGCCTTTGGTTTGAGAACCTACCTTGAAATAAAAAGAAGATGGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGCCTTTGGTTTGAGAACCTACCTTGAAATAAAAAGAAGATGGATA  995

seq1  GTAAATTATGCCAGGTGTTAGAGCAGTCTCCTGATTTGCATTAGGTCCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTATGCCAGGTGTTAGAGCAGTCTCCTGATTTGCATTAGGTCCTG  1045

seq1  GGTTTGATCTCCAGAACTGGGAAAACAAAAGAGAAATGAATGCAGCTATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCTCCAGAACTGGGAAAACAAAAGAGAAATGAATGCAGCTATC  1095

seq1  AAGTTCGAGAAGGGTGGAGATGCGTATCTGTCATCGGTAAGGTGTCTTTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGAGAAGGGTGGAGATGCGTATCTGTCATCGGTAAGGTGTCTTTC  1145

seq1  AATTAATAGGTAATGTCGAAATGAATTGACATTGGAATATCCTAGCAGTT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAGGTAATGTCGAAATGAATTGACATTGGAATATCCTAGCAGTT  1195

seq1  GGAATTC  1257
      |||||||
seq2  GGAATTC  1202