BAC Information

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BAC

Clone NameB6Ng01-012K19
Chromosome9 (Build37)
Map Location 35,320,050 - 35,351,001
singlet/doubletdoublet
Overlap geneDdx25
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon
Downstream genePus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K19.bB6Ng01-012K19.g
ACCDH847704DH847705
length1,1301,015
definitionDH847704|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K19, 5' end.DH847705|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,320,050 - 35,321,171)(35,349,801 - 35,351,001)
sequence
gaattctaactatttgaaattaagttttacctcttcttactttttaaaaa
aatgtggcaacaaaaattacatgtagctcgtattatatttttattggaca
tcactgcccccaaccaacctctctcattttatggattaaggggtaagggt
gggaaggctggtaaaatggttgtatgtaaaggagtttgccaccaagcctg
gaaagtgaatccatctctctcttgactcacctttgtagcctagcactgcc
cacctccagagcccctaatcctgattctgaaggacttcccctgcccaaac
cccagaaccatgactaggtcctgcttacccagccttagccggcagtggga
gccaggagccgtgagtgggtgggaaccctggcaggtgaactctctgcctg
ccagatcactctgagcctgcaggaggtgcacagcctgcgaagagcccagg
tcacccagggactgctgtctgtccagccagctcagcatcgcaggaggttc
gcctccaggccactcacagctcagcatgatgtactggtcacctactgtgg
ctgtggtccaacaggtaggactcccaggaggttcccctggaaagcaataa
gatcgatgtggcctgtagaaggggaagagcttggtagacccacctctccc
ctaggttacttctcccctcactctcagtccatagcatttatccagggctg
accatggggcagcacaggggggtggggtggggccaaacacaaagcagcta
ctctataagttggtgaatgttagataatagggtagaaaaacagacaatct
gggctcttttgaagacagaaccacagtggagctcttgtcttggggcatgg
gtgtacagagggaagagacagtggcagaagagaacactggcaagagagct
cttgaagctcatttctagattaacatgtaataggcagaagcagaatggtg
agtttgagggatgccacaggccagggttccagggcagaaacggaaagagt
ccaagttatgtgataaacaggaagctaaaactaaatgtatcaataatctc
cttgttctctgaatttcccggagtcgagcttaattcagaactccagtgtc
cttctagagtgtccctgtttgtaaccccac
gaattcacagaagctcattctgctgtctgtagaattttacgctatagagt
gagtggtaccacaaagtaggatttattgtgtcccaacttcctcttttgtt
caccctctcagacaggacaggcctgacttgtgagctctgcaacccctttc
cagccccacacctaaagaagcaggctcagctagtttggggccccaaactg
gcagaatccacacgtgggaaccttaagattttcaccacccaaaaactctg
cctcctcccctgtgcatactttcaaaagccaagtgtaatggcacatgctt
taagtaagggcactcaagaggcggaggcaggaggatctctgtgagttcaa
agacaggcagagctacatagtgagactctgcattgaaagaaaacagaaca
aaaagttaccccaagcccaagagagcacagatgtaggcggggagcatggc
aaagaggcatcagcaccatcttcttggatggaactctgttggaaccagtg
gatatgctccccaggaagggaactcacagaacatttggatcggaatttgt
aaaggtttcaggctgactgctgcatattccgctgacccttcaaagagttg
cctaggctccccatcttaagccacctgggtggtgggatgagaagcaccca
tgagggccactgctgctgtgccaagctcttcagaataagaacagtgagca
ggcttggtcctccgctgctgtgcgaagctcttgggaagtaagtacagtga
acaggcttggtcctccgcagcttttctcactgagcccgtcttttgcacaa
ggtgtttaggtatgtgcatgctggacccagtccacttgatgctgtttgca
tgtgtgtggtcagctatttggcaagaatcccttacttatcttggctttct
atacaaattctcaggagctctctctctctctctctctctctctctctctt
tttcctagatggtttctctgtgtagccagctgtctgacgcgctctgtgta
gacagagatccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35320050_35321171
seq2: B6Ng01-012K19.b_46_1175

seq1  GAATTCTAACTATTTGAAATTAAGTTTTACCTCTTCTTACTTTTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTATTTGAAATTAAGTTTTACCTCTTCTTACTTTTTAAAAA  50

seq1  AATGTGGCAACAAAAATTACATGTAGCTCGTATTATATTTTTATTGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCAACAAAAATTACATGTAGCTCGTATTATATTTTTATTGGACA  100

seq1  TCACTGCCCCCAACCAACCTCTCTCATTTTATGGATTAAGGGGTAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCCCCAACCAACCTCTCTCATTTTATGGATTAAGGGGTAAGGGT  150

seq1  GGGAAGGCTGGTAAAATGGTTGTATGTAAAGGAGTTTGCCACCAAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTGGTAAAATGGTTGTATGTAAAGGAGTTTGCCACCAAGCCTG  200

seq1  GAAAGTGAATCCATCTCTCTCTTGACTCACCTTTGTAGCCTAGCACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAATCCATCTCTCTCTTGACTCACCTTTGTAGCCTAGCACTGCC  250

seq1  CACCTCCAGAGCCCCTAATCCTGATTCTGAAGGACTTCCCCTGCCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGAGCCCCTAATCCTGATTCTGAAGGACTTCCCCTGCCCAAAC  300

seq1  CCCAGAACCATGACTAGGTCCTGCTTACCCAGCCTTAGCCGGCAGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACCATGACTAGGTCCTGCTTACCCAGCCTTAGCCGGCAGTGGGA  350

seq1  GCCAGGAGCCGTGAGTGGGTGGGAACCCTGGCAGGTGAACTCTCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGCCGTGAGTGGGTGGGAACCCTGGCAGGTGAACTCTCTGCCTG  400

seq1  CCAGATCACTCTGAGCCTGCAGGAGGTGCACAGCCTGCGAAGAGCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCACTCTGAGCCTGCAGGAGGTGCACAGCCTGCGAAGAGCCCAGG  450

seq1  TCACCCAGGGACTGCTGTCTGTCCAGCCAGCTCAGCATCGCAGGAGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGGGACTGCTGTCTGTCCAGCCAGCTCAGCATCGCAGGAGGTTC  500

seq1  GCCTCCAGGCCACTCACAGCTCAGCATGATGTACTGGTCACCTACTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGGCCACTCACAGCTCAGCATGATGTACTGGTCACCTACTGTGG  550

seq1  CTGTGGTCCAACAGGTAGGACTCCCAGGAGGTTCCCCTGGAAAGCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCCAACAGGTAGGACTCCCAGGAGGTTCCCCTGGAAAGCAATAA  600

seq1  GATCGATGTGGCCTGTAGAAGGGGAAGAGCTTGGTAGACCCACCTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGATGTGGCCTGTAGAAGGGGAAGAGCTTGGTAGACCCACCTCTCCC  650

seq1  CTAGGTTACTTCTCCCCTCACTCTCAGTCCATAGCATTTATCCAGGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTACTTCTCCCCTCACTCTCAGTCCATAGCATTTATCCAGGGCTG  700

seq1  ACCATGGGGCAGCACAGGGGGGTGGGGTGGGGCCAAACACAAAGCAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGGCAGCACAGGGGGGTGGGGTGGGGCCAAACACAAAGCAGCTA  750

seq1  CTCTATAAGTTGGTGAATGTTAGATAATA-GGTAGAAAAACAGACAATCT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCTATAAGTTGGTGAATGTTAGATAATAGGGTAGAAAAACAGACAATCT  800

seq1  GGGC-CCTTTGAAGACAGAACCACAGTGGAGCTC-TGTCTT-GGGCATGG  846
      |||| | ||||||||||||||||||||||||||| |||||| ||||||||
seq2  GGGCTCTTTTGAAGACAGAACCACAGTGGAGCTCTTGTCTTGGGGCATGG  850

seq1  GTGTACAGA-GGAAGAGACAGTGGCAGAAGAGAACACTGGCAAGAGAGCT  895
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGAGGGAAGAGACAGTGGCAGAAGAGAACACTGGCAAGAGAGCT  900

seq1  C-TGAAGCTCATTTCTAGATTAACATGTAATAGGCAGAAGCAGAAT-GTG  943
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGAAGCTCATTTCTAGATTAACATGTAATAGGCAGAAGCAGAATGGTG  950

seq1  AGTTTGA-GGATGCCACAGGCCAGGGTTCCAGGGCAGAAACGGAAAAGAG  992
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTTGAGGGATGCCACAGGCCAGGGTTCCAGGGCAGAAACGG-AAAGAG  999

seq1  -CCAAG-TATGTGATAGACAGGAAGCTGAGAACTAAATGTTACCATAATC  1040
       ||||| ||||||||| |||||||||| | ||||||||||  | ||||||
seq2  TCCAAGTTATGTGATAAACAGGAAGCT-AAAACTAAATGTATCAATAATC  1048

seq1  TCCTTGTTCTCTGAAATTTCCCGGAGTCAGAGCTTAATTCCAGACCCCAG  1090
      ||||||||||||| |||||||||||||| |||||||||||   || ||||
seq2  TCCTTGTTCTCTG-AATTTCCCGGAGTC-GAGCTTAATTCAGAACTCCAG  1096

seq1  -GTCCTTCTAGA-TGTCCCCTGGTTTGTA--CCCAC  1122
       ||||||||||| ||||||   |||||||  |||||
seq2  TGTCCTTCTAGAGTGTCCC--TGTTTGTAACCCCAC  1130

seq1: chr9_35349801_35351001
seq2: B6Ng01-012K19.g_67_1081 (reverse)

seq1  AGGTGGATCTCTGTGAGTTTCTCAGAGGTGTGATCTCTGTGAGTTTCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGTGTGATCTCTGTGAGTTTCTCAGAGGTGTGATCTCTGTGAGTTTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGTGTGATCTCTGTGAGTTTCTCAGAGGTGTGATCTCTGTGAGTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGAGGTGTGATCTCTGGTCTACACAGAGCGCGTTCCAGGACAGCCTG  200
           ||||| ||||||| |||||||||||||||||  || ||||||   
seq2  -----AGGTG-GATCTCT-GTCTACACAGAGCGCGT--CA-GACAGC--T  38

seq1  GGCTACACAGAGAAACCCCATCTAAGAGAAAAAAAAGAAGAAGAAGAAGA  250
      |||||||||||||||  ||||||| |     |||||||            
seq2  GGCTACACAGAGAAA--CCATCTAGG-----AAAAAGA------------  69

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCTCCTGAGAATTTTGTATA  300
         |||   |||   |||   |||   |||||||||||||| ||||||||
seq2  --GAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCCTGAGAA-TTTGTATA  116

seq1  GAAAGCCAAAGATAAGTAAGGGATTCTTGCCAAATAGCTGACCCACACAC  350
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAAGCC-AAGATAAGTAAGGGATTCTTGCCAAATAGCTGA-CCACACAC  164

seq1  ATGCAAACAGCATCAAGTGGACTGGGTCCAGCATGCACATACCTAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACAGCATCAAGTGGACTGGGTCCAGCATGCACATACCTAAACAC  214

seq1  CTTGTGCAAAAGACGGGCTCAGTGAGAAAAGCTGCGGAGGACCAAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAAAAGACGGGCTCAGTGAGAAAAGCTGCGGAGGACCAAGCCTG  264

seq1  TTCACTGTACTTACTTCCCAAGAGCTTCGCACAGCAGCGGAGGACCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTACTTACTTCCCAAGAGCTTCGCACAGCAGCGGAGGACCAAGC  314

seq1  CTGCTCACTGTTCTTATTCTGAAGAGCTTGGCACAGCAGCAGTGGCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTGTTCTTATTCTGAAGAGCTTGGCACAGCAGCAGTGGCCCTC  364

seq1  ATGGGTGCTTCTCATCCCACCACCCAGGTGGCTTAAGATGGGGAGCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGCTTCTCATCCCACCACCCAGGTGGCTTAAGATGGGGAGCCTAG  414

seq1  GCAACTCTTTGAAGGGTCAGCGGAATATGCAGCAGTCAGCCTGAAACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTTGAAGGGTCAGCGGAATATGCAGCAGTCAGCCTGAAACCTT  464

seq1  TACAAATTCCGATCCAAATGTTCTGTGAGTTCCCTTCCTGGGGAGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCCGATCCAAATGTTCTGTGAGTTCCCTTCCTGGGGAGCATAT  514

seq1  CCACTGGTTCCAACAGAGTTCCATCCAAGAAGATGGTGCTGATGCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTTCCAACAGAGTTCCATCCAAGAAGATGGTGCTGATGCCTCTT  564

seq1  TGCCATGCTCCCCGCCTACATCTGTGCTCTCTTGGGCTTGGGGTAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCTCCCCGCCTACATCTGTGCTCTCTTGGGCTTGGGGTAACTTT  614

seq1  TTGTTCTGTTTTCTTTCAATGCAGAGTCTCACTATGTAGCTCTGCCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTTTCTTTCAATGCAGAGTCTCACTATGTAGCTCTGCCTGTC  664

seq1  TTTGAACTCACAGAGATCCTCCTGCCTCCGCCTCTTGAGTGCCCTTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCACAGAGATCCTCCTGCCTCCGCCTCTTGAGTGCCCTTACTT  714

seq1  AAAGCATGTGCCATTACACTTGGCTTTTGAAAGTATGCACAGGGGAGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTGCCATTACACTTGGCTTTTGAAAGTATGCACAGGGGAGGAG  764

seq1  GCAGAGTTTTTGGGTGGTGAAAATCTTAAGGTTCCCACGTGTGGATTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTTTTGGGTGGTGAAAATCTTAAGGTTCCCACGTGTGGATTCTG  814

seq1  CCAGTTTGGGGCCCCAAACTAGCTGAGCCTGCTTCTTTAGGTGTGGGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGGGGCCCCAAACTAGCTGAGCCTGCTTCTTTAGGTGTGGGGCT  864

seq1  GGAAAGGGGTTGCAGAGCTCACAAGTCAGGCCTGTCCTGTCTGAGAGGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGTTGCAGAGCTCACAAGTCAGGCCTGTCCTGTCTGAGAGGGT  914

seq1  GAACAAAAGAGGAAGTTGGGACACAATAAATCCTACTTTGTGGTACCACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAGAGGAAGTTGGGACACAATAAATCCTACTTTGTGGTACCACT  964

seq1  CACTCTATAGCGTAAAATTCTACAGACAGCAGAATGAGCTTCTGTGAATT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATAGCGTAAAATTCTACAGACAGCAGAATGAGCTTCTGTGAATT  1014

seq1  C  1201
      |
seq2  C  1015