BAC Information

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BAC

Clone NameB6Ng01-013K03
Chromosome9 (Build37)
Map Location 24,121,415 - 24,272,512
singlet/doubletdoublet
Overlap geneDpy19l1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K03.bB6Ng01-013K03.g
ACCDH848400DH848401
length1,109842
definitionDH848400|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K03, 5' end.DH848401|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,271,397 - 24,272,512)(24,121,415 - 24,122,263)
sequence
gaattctgtagtggcctctttcatatatatgtcttgattttggagaatca
tattctcttgtagtttggaaacaagaaaacctaaagatcatttaaaaata
aatgtatcttgcagatttgaatcaatctgccccctccctctctctttctt
tgtttctttgttttttcttttattagatattttctttatattcatttcaa
atgctatcctgaaagccccctttacttctgaaacgaagcatcatgatagt
gcctccatgatctggctccagggactgattatctttcctttgaggctctg
tggtagaatgaaatgctttttattatcagtgtcttagttctccactgatt
cctacctgttaactttctcatgagaatatattttatacctgtcttgcttc
tacagttttgtgtgatattttctaattcttaccatatcttagtgtaggca
ttcactgctgacccacacaggatttggtaagctgtatcttaaataggctg
tgttgcacctatggaacttggccaattacatacttttctgaatgttctag
taacttggcttgctgtcacgtctttagtccaacccatgtggtttaacagt
tgtatatgaatatttaaagataagtatttctctttggtatgcataaagtg
atgaatgttgttgttagaaaatactagcatcttttctccaagttctttcc
cttgtatgacttcactgtcttagcaaatgacgcctctttcacagtgatgc
ccgtgcctgctcctgggagctgcctgcggccttcctctgctcttggctct
aatctgggtgtatcagaacatctcaagtccatgcattttcctctccatca
ctgtctttctaaacacgaagcctcagacactggctgtccagctatgcgtc
agccttgccctcgcacactgttctacatacactgtagttcatgtggccat
tttacttgagaactgactgagaatggcagacaatgagacttttgaacatg
tgctgatgtttggatgacaatgagatattggaatggtgggccagtgttgg
gaggtggctgtgccagctcattttaagagctttgtggacattaactgcct
gagacacac
gaattcattatccacaacagggctagaccagttaacattttaaacatgca
attccaacctcatagaatgtttaaatgagtgggagtctgctcagatactc
ccaggaaagatcccggaagtgagggggttggggtagctcagagttgccaa
cataactgcatacacatcaaaaggtgattaaatgtaatggaagtatttga
agttcattcaattacattaaatgaacatagaatgcagattagaattagac
attgatatatccagaatgtacataaagctttcaggataattgttaaaaga
atagaaacaatatgcaattttcagattaaaaaagggtaatgctggatgtg
gtggcaactgcaaacccagcacgtgagagacagagacagggagaccagaa
ttcaaagccatctcatctacatagatctggagactagccttgtctgaaag
agagaaagcaggaggaagagaaagtggagggagaccacctccctgtcttc
tctctctctgttccccacctcaccactttgggcttacagaccacaatttt
cttttccaagtgaggtcccaagtgtctttatgttcctggcttgtttcact
taacataataggttttagctttccccatgttattgataataacaggattt
catccttttttttttttttttttttttttattttttttgtggactaaagt
gcagagaaactataacttctttttcatctacacatcaatgaggacatcca
tttgattccacaagcttggctacataaatatagaaatcagattatcactt
ctaaactttgccatttgttggttattatcgtagtgatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24271397_24272512
seq2: B6Ng01-013K03.b_47_1155 (reverse)

seq1  GTGTGCCTCAGGCAGCTAATGTCCACAAAGCTCTTTATAAATGAGCT-GC  49
      ||||| ||||||||| |||||||||||||||||||   ||||||||| ||
seq2  GTGTGTCTCAGGCAGTTAATGTCCACAAAGCTCTT--AAAATGAGCTGGC  48

seq1  ACAAGCCACCTCCCAACACTTGGCCACCATTCC-ATATCTCATTGTCAAT  98
      || ||||||||||||||||| | |||||||||| ||||||||||||| ||
seq2  AC-AGCCACCTCCCAACACTGGCCCACCATTCCAATATCTCATTGTC-AT  96

seq1  CCAAACATCAGCACATGTTCAAAAGTCTGCATTTGTCTGCCATGTCTCAG  148
      |||||||||||||||||||||||||||| || ||||||||||| ||||||
seq2  CCAAACATCAGCACATGTTCAAAAGTCT-CA-TTGTCTGCCAT-TCTCAG  143

seq1  TCAG-TCTCAAGTAAAATGGCCACATGAACTACAGTGTATGTAGAACAGT  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTCAAGTAAAATGGCCACATGAACTACAGTGTATGTAGAACAGT  193

seq1  GTGGCGAGGGCAAGGCTGACGCATTAGCTGGACAGCCAGTGTCCTGAGGC  247
      || |||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GT-GCGAGGGCAAGGCTGACGCA-TAGCTGGACAGCCAGTGT-CTGAGGC  240

seq1  TTCGTGTTTAGAAAGACAGTGATGGAGAGGAAAATGCATGGACTTGAGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTTTAGAAAGACAGTGATGGAGAGGAAAATGCATGGACTTGAGAT  290

seq1  GTTCTGATACACCCAGATTAGAGCCAAGAGCAGAGGAAGGCCGCAGGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATACACCCAGATTAGAGCCAAGAGCAGAGGAAGGCCGCAGGCAG  340

seq1  CTCCCAGGAGCAGGCACGGGCATCACTGTGAAAGAGGCGTCATTTGCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAGCAGGCACGGGCATCACTGTGAAAGAGGCGTCATTTGCTAA  390

seq1  GACAGTGAAGTCATACAAGGGAAAGAACTTGGAGAAAAGATGCTAGTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAAGTCATACAAGGGAAAGAACTTGGAGAAAAGATGCTAGTATT  440

seq1  TTCTAACAACAACATTCATCACTTTATGCATACCAAAGAGAAATACTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAACAACATTCATCACTTTATGCATACCAAAGAGAAATACTTAT  490

seq1  CTTTAAATATTCATATACAACTGTTAAACCACATGGGTTGGACTAAAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATTCATATACAACTGTTAAACCACATGGGTTGGACTAAAGAC  540

seq1  GTGACAGCAAGCCAAGTTACTAGAACATTCAGAAAAGTATGTAATTGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAAGCCAAGTTACTAGAACATTCAGAAAAGTATGTAATTGGCC  590

seq1  AAGTTCCATAGGTGCAACACAGCCTATTTAAGATACAGCTTACCAAATCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATAGGTGCAACACAGCCTATTTAAGATACAGCTTACCAAATCC  640

seq1  TGTGTGGGTCAGCAGTGAATGCCTACACTAAGATATGGTAAGAATTAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGTCAGCAGTGAATGCCTACACTAAGATATGGTAAGAATTAGAA  690

seq1  AATATCACACAAAACTGTAGAAGCAAGACAGGTATAAAATATATTCTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACACAAAACTGTAGAAGCAAGACAGGTATAAAATATATTCTCAT  740

seq1  GAGAAAGTTAACAGGTAGGAATCAGTGGAGAACTAAGACACTGATAATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTAACAGGTAGGAATCAGTGGAGAACTAAGACACTGATAATAA  790

seq1  AAAGCATTTCATTCTACCACAGAGCCTCAAAGGAAAGATAATCAGTCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTCATTCTACCACAGAGCCTCAAAGGAAAGATAATCAGTCCCT  840

seq1  GGAGCCAGATCATGGAGGCACTATCATGATGCTTCGTTTCAGAAGTAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGATCATGGAGGCACTATCATGATGCTTCGTTTCAGAAGTAAAG  890

seq1  GGGGCTTTCAGGATAGCATTTGAAATGAATATAAAGAAAATATCTAATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTCAGGATAGCATTTGAAATGAATATAAAGAAAATATCTAATAA  940

seq1  AAGAAAAAACAAAGAAACAAAGAAAGAGAGAGGGAGGGGGCAGATTGATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAACAAAGAAACAAAGAAAGAGAGAGGGAGGGGGCAGATTGATT  990

seq1  CAAATCTGCAAGATACATTTATTTTTAAATGATCTTTAGGTTTTCTTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGCAAGATACATTTATTTTTAAATGATCTTTAGGTTTTCTTGTT  1040

seq1  TCCAAACTACAAGAGAATATGATTCTCCAAAATCAAGACATATATATGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTACAAGAGAATATGATTCTCCAAAATCAAGACATATATATGAA  1090

seq1  AGAGGCCACTACAGAATTC  1116
      |||||||||||||||||||
seq2  AGAGGCCACTACAGAATTC  1109

seq1: chr9_24121415_24122263
seq2: B6Ng01-013K03.g_65_906

seq1  GAATTCATTATCCACAACAGGGCTAGACCAGTTAACATTTTAAACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCCACAACAGGGCTAGACCAGTTAACATTTTAAACATGCA  50

seq1  ATTCCAACCTCATAGAATGTTTAAATGAGTGGGAGTCTGCTCAGATACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACCTCATAGAATGTTTAAATGAGTGGGAGTCTGCTCAGATACTC  100

seq1  CCAGGAAAGATCCCGGAAGTGAGGGGGTTGGGGTAGCTCAGAGTTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGATCCCGGAAGTGAGGGGGTTGGGGTAGCTCAGAGTTGCCAA  150

seq1  CATAACTGCATACACATCAAAAGGTGATTAAATGTAATGGAAGTATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGCATACACATCAAAAGGTGATTAAATGTAATGGAAGTATTTGA  200

seq1  AGTTCATTCAATTACATTAAATGAACATAGAATGCAGATTAGAATTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCAATTACATTAAATGAACATAGAATGCAGATTAGAATTAGAC  250

seq1  ATTGATATATCCAGAATGTACATAAAGCTTTCAGGATAATTGTTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATATCCAGAATGTACATAAAGCTTTCAGGATAATTGTTAAAAGA  300

seq1  ATAGAAACAATATGCAATTTTCAGATTAAAAAAGGGTAATGCTGGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACAATATGCAATTTTCAGATTAAAAAAGGGTAATGCTGGATGTG  350

seq1  GTGGCAACTGCAAACCCAGCACGTGAGAGACAGAGACAGGGAGACCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAACTGCAAACCCAGCACGTGAGAGACAGAGACAGGGAGACCAGAA  400

seq1  TTCAAAGCCATCTCATCTACATAGATCTGGAGACTAGCCTTGTCTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCATCTCATCTACATAGATCTGGAGACTAGCCTTGTCTGAAAG  450

seq1  AGAGAAAGCAGGAGGAAGAGAAAGTGGAGGGAGACCACCTCCCTGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCAGGAGGAAGAGAAAGTGGAGGGAGACCACCTCCCTGTCTTC  500

seq1  TCTCTCTCTGTTCCCCACCTCACCACTTTGGGCTTACAGACCACAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTTCCCCACCTCACCACTTTGGGCTTACAGACCACAATTTT  550

seq1  CTTTTCCAAGTGAGGTCCCAAGTGTCTTTATGTTCCTGGCTTGTTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAGTGAGGTCCCAAGTGTCTTTATGTTCCTGGCTTGTTTCACT  600

seq1  TAACATAATAGGTTTTAGCTTTCCCCATGTTATTGATAATAACAGGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAATAGGTTTTAGCTTTCCCCATGTTATTGATAATAACAGGATTT  650

seq1  CATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTAAG  700
      |||||  |||||||||||||||||||||||| |||||||| || ||||| 
seq2  CATCC--TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTGTGGACTAAA  698

seq1  GTGCAG-GGAACTAAAACTTCTTTATCCATCTACACATCAATGAGCACAT  749
      |||||| | ||||| ||||||||| | |||||||||||||||||| ||||
seq2  GTGCAGAGAAACTATAACTTCTTT-TTCATCTACACATCAATGAGGACAT  747

seq1  -CATTTGATTCCAC-AGCTTGGCTACAATAAATATAGGAAATCAGATTAT  797
       ||||||||||||| ||||||||||| ||||||||| |||||||||||||
seq2  CCATTTGATTCCACAAGCTTGGCTAC-ATAAATATA-GAAATCAGATTAT  795

seq1  CACTTCTAAAACTTTGCCATTTGTGTGGTTATTATCTGTTAGTTGATTTT  847
      ||||||| |||||||||||||||| |||||||||||   ||| |||||||
seq2  CACTTCT-AAACTTTGCCATTTGT-TGGTTATTATC--GTAG-TGATTTT  840

seq1  TT  849
      ||
seq2  TT  842