BAC Information

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BAC

Clone NameB6Ng01-013O12
Chromosome9 (Build37)
Map Location 116,082,084 - 116,083,212
singlet/doubletsinglet
Overlap geneTgfbr2
Upstream geneOsbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829
Downstream geneLOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013O12.bB6Ng01-013O12.g
ACCDH848603DH848604
length1,1121,090
definitionDH848603|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O12, 5' end.DH848604|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctaaagaaatg
ttcagcacccttaatcatcagggaaacgaaaatcaaaacaaccctgagat
tccacctcacaccagtcagagtggctaagatcaaaaactcaggtgacagc
agatgctggcaaggatgtggagaaagaagaacactcctccattgctggtg
ggattacaagctggtacaaccactctggaaatcagattgacagttcctca
gaaaattggacacagtactaccagagaacccagtaataccactcccgggc
atatacccagaagatgctccaacatgtaataaggacacatgctccactat
gttcatagaagccttatttataactgccagaagctggaaagaacccagat
gtccctcaacgaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacagtgaatttatgaaattcttaggcaaa
tgggtggatctggaggatatcatcctgagtgaggtaacccagtcaacaaa
agttgtaagtggatattagtccagaagctcagaatacccaagatacaatt
cacaaaacacatgaaactcaagaagaaggaagaccaacatgtggatactt
cattcttagaagggcaaacaaaatacccatggaaggagttacagagacaa
agtgtggagcagagactgaagaaattaccacctggtgattcatcccatct
acaaccatcaaacccagacactattgtggatgccagtgcctgacaaatac
aaaaagtggatgctctcagccaaccattggactgagtacagggtccccaa
tggaggaactagagaaactacccaaggagcagaaaggggtttgctgcccc
ataggaggaacaacaatatgaactacccagtacccccagaactccctggg
actaaatcaccaaccaaagaagacacataatgggactcatgggtctagct
gcatatgtagcagagatgcctgtcgtcatcatgggaggaaagccttgtct
atgaagttctatgccaaatgtagggaatgccaggccaagaagcaggagtt
gggggttgaata
gaattccaagtgtccttccacgcgccctttccctaggagctgtcttccca
cttaaaaccatctttaaaaactttgaccacataggtacaactcaaaacga
actgtccaaacatcctggaatggcaattccataaaatgttaaaaaaaaaa
aaaaaaagccctctccgtcttataaaactatttaaagcccaaattaaaaa
gatccaccaagtcagtcagctaattgtttaaaactgtgcataaatatgac
tcacaagctacaaagcctggaattcgaaaatcacaaatcttaatcttgta
aacaaaactcaaactggggcctctggacttcggttcttctcgagctaaag
caaacgttttatgtacacaaagggaaggatattctttctgatggtcttca
gcaaaacccagcagggttttttttttcttttaatttttttttcttgtgtg
tgtctatatgtgcttggggtagggtttgtgagcacaggaaggggcagagg
aggagaccaggggtcctctgtcactctccatgagtctctatcactctctt
tgagtctctctccgaacctagagctaacctggcatcgagcaatttccaaa
gggtttccagtcttctctcactagtgctgggctggcaaagaaccacaccc
aactttgcatatgggccctcggggatttgaactcacgtcctcaagcttgc
acagcaaacactcttagccactgagctaaatctcccaagccagctttaag
ggcctgggttaacatgagagacagttgacctttctggaactgcacttcaa
tggaaaccaacgacacgaacgcggactttatgaagcaacaggactaaaac
ctgttaggatttttgctgtttccctttgggtggctcttcccttctgaaat
ggtccactgctgttgcacacgatcaaacttttaaatcactcactacggag
gctgcacgagctctctgaccttactcgggctcccgaacaacacaccacta
catcacatcaaccgacgagagggcaccgaatcctgaattcaccctatcga
ctggcattccttagtcaggaagtcatggaggcagtgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116082084_116083212
seq2: B6Ng01-013O12.g_66_1155

seq1  GAATTCCAAGTGTCCTTCCACGCGCCCTTTCCCTAGGAGCTGTCTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGTCCTTCCACGCGCCCTTTCCCTAGGAGCTGTCTTCCCA  50

seq1  CTTAAAACCATCTTTAAAAACTTTGACCACATAGGTACAACTCAAAACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACCATCTTTAAAAACTTTGACCACATAGGTACAACTCAAAACGA  100

seq1  ACTGTCCAAACATCCTGGAATGGCAATTCCATAAAATGTTAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAAACATCCTGGAATGGCAATTCCATAAAATGTTAAAAAAAAAA  150

seq1  AAAAAAAGCCCTCTCCGTCTTATAAAACTATTTAAAGCCCAAATTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCCTCTCCGTCTTATAAAACTATTTAAAGCCCAAATTAAAAA  200

seq1  GATCCACCAAGTCAGTCAGCTAATTGTTTAAAACTGTGCATAAATATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCAAGTCAGTCAGCTAATTGTTTAAAACTGTGCATAAATATGAC  250

seq1  TCACAAGCTACAAAGCCTGGAATTCGAAAATCACAAATCTTAATCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCTACAAAGCCTGGAATTCGAAAATCACAAATCTTAATCTTGTA  300

seq1  AACAAAACTCAAACTGGGGCCTCTGGACTTCGGTTCTTCTCGAGCTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTCAAACTGGGGCCTCTGGACTTCGGTTCTTCTCGAGCTAAAG  350

seq1  CAAACGTTTTATGTACACAAAGGGAAGGATATTCTTTCTGATGGTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGTTTTATGTACACAAAGGGAAGGATATTCTTTCTGATGGTCTTCA  400

seq1  GCAAAACCCAGCAGGGTTTTTTTTTTCTTTTAATTTTTTTTTCTTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCCAGCAGGGTTTTTTTTTTCTTTTAATTTTTTTTTCTTGTGTG  450

seq1  TGTCTATATGTGCTTGGGGTAGGGTTTGTGAGCACAGGAAGGGGCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATGTGCTTGGGGTAGGGTTTGTGAGCACAGGAAGGGGCAGAGG  500

seq1  AGGAGACCAGGGGTCCTCTGTCACTCTCCATGAGTCTCTATCACTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCAGGGGTCCTCTGTCACTCTCCATGAGTCTCTATCACTCTCTT  550

seq1  TGAGTCTCTCTCCGAACCTAGAGCTAACCTGGCATCGAGCAATTTCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCTCTCCGAACCTAGAGCTAACCTGGCATCGAGCAATTTCCAAA  600

seq1  GGGTTTCCAGTCTTCTCTCACTAGTGCTGGGCTGGCAAAGAACCACACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCAGTCTTCTCTCACTAGTGCTGGGCTGGCAAAGAACCACACCC  650

seq1  AACTTTGCATATGGGCCCTC-GGGATTTGAACTCACGTCCTCAAGCTTGC  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACTTTGCATATGGGCCCTCGGGGATTTGAACTCACGTCCTCAAGCTTGC  700

seq1  ACAGCAAACACTCTTAGCCACTGAGCTAAATCTCCCAAGCCAGCTTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACACTCTTAGCCACTGAGCTAAATCTCCCAAGCCAGCTTTAAG  750

seq1  GGCCTGGGTTAACATGAGAGACAGTTGACCTTTCTGGAACTGCACTTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTTAACATGAGAGACAGTTGACCTTTCTGGAACTGCACTTCAA  800

seq1  TGGAAACCAACGACACGAACGCGGACTTTATGAAGCAACAGGACTAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAACGACACGAACGCGGACTTTATGAAGCAACAGGACTAAAAC  850

seq1  CTGTTAGGATTTTTGCTGTTTCCCTTTGTGTGGCTCTTCCCTTCTGAAAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGTTAGGATTTTTGCTGTTTCCCTTTGGGTGGCTCTTCCCTTCTGAAAT  900

seq1  GGTCCACTGCTGTTTGCAACACGATCCAAAACTCTTAAATCACCTCAACT  949
      |||||||||||| |||| ||||||||  ||||| |||||||| ||| |||
seq2  GGTCCACTGCTG-TTGC-ACACGATC--AAACTTTTAAATCA-CTC-ACT  944

seq1  ACCGATGTCTGCAACGAGCTCTCTTGCACCCTACTTCCGCGCTCCCCAAC  999
      || || | |||| |||||||||||   ||| ||||  || |||||| |||
seq2  ACGGA-GGCTGC-ACGAGCTCTCT--GACCTTACT--CGGGCTCCCGAAC  988

seq1  ACACACACACACACACACACACACACACACACACACACACACACGGCCAC  1049
      |         |||||| |||  |||  ||||   ||  ||    || |||
seq2  A---------ACACAC-CAC-TACA-TCACATCAACCGACGAGAGGGCAC  1026

seq1  CGCAATCTCTGCATTTCACCCCAAATCGACCCTGGCCATCCTCTTAGTTA  1099
      || |||| ||| | |||||||   |||||  |||||  ||  |||||| |
seq2  CG-AATC-CTG-AATTCACCC--TATCGA--CTGGCATTC--CTTAGTCA  1067

seq1  CTAGGGAAGGTCATGGAAAGCCAGTGATGA  1129
          |||| |||||||  || |||||||||
seq2  ----GGAA-GTCATGG--AGGCAGTGATGA  1090