BAC Information

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BAC

Clone NameB6Ng01-014D06
Chromosome9 (Build37)
Map Location 65,374,777 - 65,534,855
singlet/doubletdoublet
Overlap genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a
Downstream geneZfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D06.bB6Ng01-014D06.g
ACCDH848814DH848815
length1,006778
definitionDH848814|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D06, 5' end.DH848815|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,533,671 - 65,534,855)(65,374,777 - 65,375,552)
sequence
gaattcctaatctgacagtttgtcagagctgtaccttctctaagagaaaa
ataatataaacatgaagttctagtattgcgacactggagactggagcagg
aggattatgagttaaaggccagcctgaactacataaggcattttgttgtt
attttgttttttgttttgttttttttaattaggtattttcctcatttaca
ttttcatgttattttgtttttaagacagtatctcactatatagccctggc
tggcctggaactcctagagatccacctgcctttgctccaaagtgttgcac
taaaaggcttaagctaccatgtgtggcctgaggtcttgcctttaagaaaa
agatagctgggtatggaatatacgcctatgatcccagcacttaagtcctt
atgcacagaattctgatgccctgctaactttccattcctaacctaagaaa
gaagctgaactgggtcctgggcctcaatcaccattagattaaaaggcaac
aagcagcactaatgattctccctctaggattccaataaagcatgcacagc
ttcaattttaaaaagttatcagttcccattttccctccgccaccctacta
cttctgcctaagagaacactaaggaaaaattaagcatttgagcagctgct
ctgtgggatctgggagactccacttctatactaggtcctccttaccttat
atattagagctgagagagaaggatccctgccgccccctcgcccaccgggg
atcttcgacagtgggtgaggggcatcaggagcaccacagaggccctggaa
caatgtgcctgcagcactggagctggggacacttactcaacggcaaaata
ctactgcaaagagacagaaagtcagacagtaaacaccaggacattcagcc
cacaccctccagccccgccctccctctgccaagtattctatggcttcccc
actgctcaagtggttcggcttcttcttcttcttccttcttctttcttctt
gttgtt
gaattcactctgtagaccaggctgacctcaaactgagatccacctgcctc
tgactccttagtgctgggattaaaggcctgcgccaccatatctggatggg
ttttttgtttgtttgatgttgagctagaaccagatttgtaaaataggttg
gctttgaactgtgtctagttgtgtgcacctgcaatctagtacttaggaga
tggaggcaggaggatcagaagttcaaggtcagcctgtctctggcatagcc
agaccttaaatcaaaaagaaacaaatcggctggtctttgtggcccatgcc
cttaatcccagtactccggatgcagaggcatgggaatctctgtaagttca
aggccagcttggtctacaaagagagttccgggacagccagggccacacag
agaaaccctgtctcagaaaaaaatttaaaagaaataaaaacataaaaata
aacaaataaggactggagagatggttccccaggaaagggcacttgttgcc
cttgctgatgactgagtgtaatacccaagtggtggctcacaaacatccat
acctccagttccagggggtcagacctctttgggcaccaggaacacatgtg
tacacagtcagacatgcaagcaaaacactcataacatgaaatcaataaat
ctctttttttttggtttgttttttgtttttttttgttttatgttttttgt
tttctttttttagagacaagggtttctctgtgtggccctggctgtccttg
aaactctctttgtagaccaagctggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65533671_65534855
seq2: B6Ng01-014D06.b_47_1046 (reverse)

seq1  AAGAAGAAAGAATTAAGCCAGTCAGTGGTGGTGCACACCTGCACTTGGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTTCCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACAAAACAAAACAAAACAAAACAAAGAAAGAAAGAAAGAAAGAGAAAGA  200
                                  ||| |||||||||  || ||| 
seq2  ----------------------------AAG-AAGAAAGAAGAAGGAAG-  20

seq1  AAGAAAGAAAGAAAGACCGAACCAACTTGAGCAGTGGGGAAGCCATAGAA  250
      |||||   |||||   ||||||| ||||||||||||||||||||||||||
seq2  AAGAA--GAAGAA--GCCGAACC-ACTTGAGCAGTGGGGAAGCCATAGAA  65

seq1  TACTTGGCAGAGGGAGGGCGGGGCTGGAGGGTGTGGGCTGAATGTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCAGAGGGAGGGCGGGGCTGGAGGGTGTGGGCTGAATGTCCTGG  115

seq1  TGTTTACTGTCTGACTTTCTGTCTCTTTGCAGTAGTATTTTGCCGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGTCTGACTTTCTGTCTCTTTGCAGTAGTATTTTGCCGTTGAG  165

seq1  TAAGTGTCCCCAGCTCCAGTGCTGCAGGCACATTGTTCCAGGGCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCCCCAGCTCCAGTGCTGCAGGCACATTGTTCCAGGGCCTCTGT  215

seq1  GGTGCTCCTGATGCCCCTCACCCACTGTCGAAGATCCCCGGTGGGCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCCTGATGCCCCTCACCCACTGTCGAAGATCCCCGGTGGGCGAGG  265

seq1  GGGCGGCAGGGATCCTTCTCTCTCAGCTCTAATATATAAGGTAAGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCAGGGATCCTTCTCTCTCAGCTCTAATATATAAGGTAAGGAGGA  315

seq1  CCTAGTATAGAAGTGGAGTCTCCCAGATCCCACAGAGCAGCTGCTCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATAGAAGTGGAGTCTCCCAGATCCCACAGAGCAGCTGCTCAAAT  365

seq1  GCTTAATTTTTCCTTAGTGTTCTCTTAGGCAGAAGTAGTAGGGTGGCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTTTTCCTTAGTGTTCTCTTAGGCAGAAGTAGTAGGGTGGCGGA  415

seq1  GGGAAAATGGGAACTGATAACTTTTTAAAATTGAAGCTGTGCATGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGGGAACTGATAACTTTTTAAAATTGAAGCTGTGCATGCTTTA  465

seq1  TTGGAATCCTAGAGGGAGAATCATTAGTGCTGCTTGTTGCCTTTTAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCCTAGAGGGAGAATCATTAGTGCTGCTTGTTGCCTTTTAATCT  515

seq1  AATGGTGATTGAGGCCCAGGACCCAGTTCAGCTTCTTTCTTAGGTTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGATTGAGGCCCAGGACCCAGTTCAGCTTCTTTCTTAGGTTAGGA  565

seq1  ATGGAAAGTTAGCAGGGCATCAGAATTCTGTGCATAAGGACTTAAGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTTAGCAGGGCATCAGAATTCTGTGCATAAGGACTTAAGTGCT  615

seq1  GGGATCATAGGCGTATATTCCATACCCAGCTATCTTTTTCTTAAAGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATAGGCGTATATTCCATACCCAGCTATCTTTTTCTTAAAGGCAA  665

seq1  GACCTCAGGCCACACATGGTAGCTTAAGCCTTTTAGTGCAACACTTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGGCCACACATGGTAGCTTAAGCCTTTTAGTGCAACACTTTGGA  715

seq1  GCAAAGGCAGGTGGATCTCTAGGAGTTCCAGGCCAGCCAGGGCTATATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAGGTGGATCTCTAGGAGTTCCAGGCCAGCCAGGGCTATATAG  765

seq1  TGAGATACTGTCTTAAAAACAAAATAACATGAAAATGTAAATGAGGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACTGTCTTAAAAACAAAATAACATGAAAATGTAAATGAGGAAAA  815

seq1  TACCTAATTAAAAAAAACAAAACAAAAAACAAAATAACAACAAAATGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATTAAAAAAAACAAAACAAAAAACAAAATAACAACAAAATGCCT  865

seq1  TATGTAGTTCAGGCTGGCCTTTAACTCATAATCCTCCTGCTCCAGTCTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTTCAGGCTGGCCTTTAACTCATAATCCTCCTGCTCCAGTCTCC  915

seq1  AGTGTCGCAATACTAGAACTTCATGTTTATATTATTTTTCTCTTAGAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGCAATACTAGAACTTCATGTTTATATTATTTTTCTCTTAGAGAA  965

seq1  GGTACAGCTCTGACAAACTGTCAGATTAGGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  GGTACAGCTCTGACAAACTGTCAGATTAGGAATTC  1000

seq1: chr9_65374777_65375552
seq2: B6Ng01-014D06.g_67_844

seq1  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTGAGATCCACCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTGAGATCCACCTGCCTC  50

seq1  TGACTCCTTAGTGCTGGGATTAAAGGCCTGCGCCACCATATCTGGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTTAGTGCTGGGATTAAAGGCCTGCGCCACCATATCTGGATGGG  100

seq1  TTTTTTGTTTGTTTGATGTTGAGCTAGAACCAGATTTGTAAAATAGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGATGTTGAGCTAGAACCAGATTTGTAAAATAGGTTG  150

seq1  GCTTTGAACTGTGTCTAGTTGTGTGCACCTGCAATCTAGTACTTAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAACTGTGTCTAGTTGTGTGCACCTGCAATCTAGTACTTAGGAGA  200

seq1  TGGAGGCAGGAGGATCAGAAGTTCAAGGTCAGCCTGTCTCTGGCATAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGAGGATCAGAAGTTCAAGGTCAGCCTGTCTCTGGCATAGCC  250

seq1  AGACCTTAAATCAAAAAGAAACAAATCGGCTGGTCTTTGTGGCCCATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTAAATCAAAAAGAAACAAATCGGCTGGTCTTTGTGGCCCATGCC  300

seq1  CTTAATCCCAGTACTCCGGATGCAGAGGCATGGGAATCTCTGTAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCCAGTACTCCGGATGCAGAGGCATGGGAATCTCTGTAAGTTCA  350

seq1  AGGCCAGCTTGGTCTACAAAGAGAGTTCCAGGACAGCCAGGGCCACACAG  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGCCAGCTTGGTCTACAAAGAGAGTTCCGGGACAGCCAGGGCCACACAG  400

seq1  AGAAACCCTGTCTCAGAAAAAAATTTAAAAGAAATAAAAACATAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAGAAAAAAATTTAAAAGAAATAAAAACATAAAAATA  450

seq1  AACAAATAAGGACTGGAGAGATGGTTCCCCAGGAAAGGGCACTTGTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAGGACTGGAGAGATGGTTCCCCAGGAAAGGGCACTTGTTGCC  500

seq1  CTTGCTGATGACTGAGTGTAATACCCAAGTGGTGGCTCACAAACATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGATGACTGAGTGTAATACCCAAGTGGTGGCTCACAAACATCCAT  550

seq1  ACCTCCAGTTCCAGGGGGTCAGACCTCTTTGGGCACCAGGAACACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTTCCAGGGGGTCAGACCTCTTTGGGCACCAGGAACACATGTG  600

seq1  TACACAGTCAGACATGCAAGCAAAACACTCATAACATGAAATCAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTCAGACATGCAAGCAAAACACTCATAACATGAAATCAATAAAT  650

seq1  CTCTTTTTTTTTGGTTTGTTTTTTGTTTTTTTTTGTTTTTTGTTTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTTTTTTTTTGGTTTGTTTTTTGTTTTTTTTTGTTTTATGTTTTTTGT  700

seq1  TTTTTTTTTTTTGAGAC-AGGGTTTCTCTGTGTAGCCCTGGCTGTCC-TG  748
      ||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||
seq2  TTTCTTTTTTTAGAGACAAGGGTTTCTCTGTGTGGCCCTGGCTGTCCTTG  750

seq1  GAACTCACTCTGTAGACCAGGCTGGCCT  776
       ||||| || ||||||||| ||||||||
seq2  AAACTCTCTTTGTAGACCAAGCTGGCCT  778