BAC Information

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BAC

Clone NameB6Ng01-014D11
Chromosome9 (Build37)
Map Location 58,915,458 - 59,133,605
singlet/doubletdoublet
Overlap geneEG665330
Upstream gene4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D11.bB6Ng01-014D11.g
ACCDH848821DH848822
length1,039819
definitionDH848821|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D11, 5' end.DH848822|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,132,566 - 59,133,605)(58,915,458 - 58,916,277)
sequence
gaattccatgagaccagggagcgtgtgtactccagccagtgacctcatta
gtgcctgacagtcagcaagcagctgttgaataatcaagaatcctccagca
ggggcctgcgaaacgccaccaagccagacaacctgagtctgatccccagg
acctatgtgatagaaggagggaacggactcccaaaagttgtcctctgaca
agtgccgtggctcataataaataaattataaataaataaatgtaataaaa
tgtgtcttaaagaaaaaaaaactctccagtagcagtcacactattttctc
attacctggatgagaaactggactgctaaagaaaagcatttgctccaaac
tgtacagtgtagggtagcactgctgggaagagggggtgctgcagttaagt
cttcaggctccccatactttgtaggatttgtttgtttgtttgtttgtttg
tttgttttgattgtcctatagcttgatctgcagaccatattggcctcgaa
ctcacagagatccacctgcctctggctcctgagggagggcaccgcctggc
tccccactttgtttttaaacatgaacacaagaaacggagcagatcaaagt
tggctgtggtcacctccttctatagcacagacagacttgccacagtgcct
gagccagaagtagcgggtctctcagtggccagcccttggagggaggggtc
tacagggctttggcagcagtggcgggctgctgcaaataatttacttctaa
atcttccttcgaaggacattgagggtccttgaagcctgttgcaagcaagg
ttacacaaatgattcggtcccattttgaaactgtagtgcatgggtgtttg
tttgttgacactattttctgtttggaatgatagagattaacttcaactaa
aaaacagtctaacaaatacatggatattttctcaaaatactacagattgt
agcatgaatacaagctgaacatgatgggacaggccaacctggtagctagt
gagtccaggccagctagggctcatagtggagaccctgtc
gaattcccatcaatgtgaaagatcctatttgttttattgggcacactcta
gagatatgatcctagaacatgccgagaatccacatttcataacactactc
tagctttcccctctcattggccccagagactggctaggtacttacctact
atgatccaagcagtgcaaggctgagtcactgcatggtgtctctggactga
aggactattggtgatttctaaagatcttggttttctgggagggcagaaca
aaatttttttagctcttgacaagagttcgatgctttgctgggctcctgct
agacctagaaccctcaaagtccattgccaacaagattcatacattattac
tttcctctcgttatggtggagttgtttggatgagagagaggctcccgtag
tgagactagtagatttagaagatgaagatagagattaaaatgagatagag
gagagaaagaggaggggggaacccaaatatttgttctttcttgccaagtg
atggctctttccatgtcttgacacagcaagaaacccttcaccaggtgcaa
accctcagtcttggactttccagagaaggcaaaagagaagctaactgccc
agtgagcagagcggatggtccctcgattccagggagtcaggatgttgtgt
ctcctctcccaggtctcttctccctcacactgatgtccttcagtcgagct
aagcaagaacatccaacaaaccaaggcagcggagcatgcatgtgtgtagg
tggaaagaatgaccttttctatgtcctgcccacccttcaaatatgctctt
aaatgcatgccccagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59132566_59133605
seq2: B6Ng01-014D11.b_48_1086 (reverse)

seq1  GACAGGGTCT-CACTATGTAGCCCTGGCTGGCCTGGAACTCACTAGCTAC  49
      |||||||||| ||||||| |||||| |||||||||| |||||||||||||
seq2  GACAGGGTCTCCACTATG-AGCCCTAGCTGGCCTGG-ACTCACTAGCTAC  48

seq1  CAGGTTGGCCTGTCCCATCATGTTCAGCTTGTA-TCTTGCTAC-ATCTGT  97
      ||||||||||||||||||||||||||||||||| || |||||| ||||||
seq2  CAGGTTGGCCTGTCCCATCATGTTCAGCTTGTATTCATGCTACAATCTGT  98

seq1  AGTATTTTTGAGAAAATAT-CATGTATTTGTTAGACTGTTTTTTAGTTGA  146
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTA-TTTTGAGAAAATATCCATGTATTTGTTAGACTGTTTTTTAGTTGA  147

seq1  AGTTAATCTCTATCATTCCAAACAGAAAATAGTGTCAACAAACAAACACC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCTCTATCATTCCAAACAGAAAATAGTGTCAACAAACAAACACC  197

seq1  CATGCACTACAGTTTCAAAATTGGGACCGAATCATTTGTGTAACCTTGCT  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATGCACTACAGTTTCAAAA-TGGGACCGAATCATTTGTGTAACCTTGCT  246

seq1  TGCAACAGGCTTCAAGGACCCTCAATGTCCCTTCGAAGGAAGATTTAGAA  296
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCAACAGGCTTCAAGGACCCTCAATGT-CCTTCGAAGGAAGATTTAGAA  295

seq1  GTAAATTATTTGCAGCAGCCCGCCACTGCTGCCAAAGCCCTGTAGACCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTATTTGCAGCAGCCCGCCACTGCTGCCAAAGCCCTGTAGACCCC  345

seq1  TCCCTCCAAGGGCTGGCCACTGAGAGACCCGCTACTTCTGGCTCAGGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAAGGGCTGGCCACTGAGAGACCCGCTACTTCTGGCTCAGGCAC  395

seq1  TGTGGCAAGTCTGTCTGTGCTATAGAAGGAGGTGACCACAGCCAACTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAGTCTGTCTGTGCTATAGAAGGAGGTGACCACAGCCAACTTTG  445

seq1  ATCTGCTCCGTTTCTTGTGTTCATGTTTAAAAACAAAGTGGGGAGCCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCGTTTCTTGTGTTCATGTTTAAAAACAAAGTGGGGAGCCAGG  495

seq1  CGGTGCCCTCCCTCAGGAGCCAGAGGCAGGTGGATCTCTGTGAGTTCGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCCTCCCTCAGGAGCCAGAGGCAGGTGGATCTCTGTGAGTTCGAG  545

seq1  GCCAATATGGTCTGCAGATCAAGCTATAGGACAATCAAAACAAACAAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATATGGTCTGCAGATCAAGCTATAGGACAATCAAAACAAACAAACA  595

seq1  AACAAACAAACAAACAAATCCTACAAAGTATGGGGAGCCTGAAGACTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAATCCTACAAAGTATGGGGAGCCTGAAGACTTAA  645

seq1  CTGCAGCACCCCCTCTTCCCAGCAGTGCTACCCTACACTGTACAGTTTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACCCCCTCTTCCCAGCAGTGCTACCCTACACTGTACAGTTTGG  695

seq1  AGCAAATGCTTTTCTTTAGCAGTCCAGTTTCTCATCCAGGTAATGAGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGCTTTTCTTTAGCAGTCCAGTTTCTCATCCAGGTAATGAGAAA  745

seq1  ATAGTGTGACTGCTACTGGAGAGTTTTTTTTTCTTTAAGACACATTTTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGACTGCTACTGGAGAGTTTTTTTTTCTTTAAGACACATTTTAT  795

seq1  TACATTTATTTATTTATAATTTATTTATTATGAGCCACGGCACTTGTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATTTATTTATAATTTATTTATTATGAGCCACGGCACTTGTCAG  845

seq1  AGGACAACTTTTGGGAGTCCGTTCCCTCCTTCTATCACATAGGTCCTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACTTTTGGGAGTCCGTTCCCTCCTTCTATCACATAGGTCCTGGG  895

seq1  GATCAGACTCAGGTTGTCTGGCTTGGTGGCGTTTCGCAGGCCCCTGCTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACTCAGGTTGTCTGGCTTGGTGGCGTTTCGCAGGCCCCTGCTGG  945

seq1  AGGATTCTTGATTATTCAACAGCTGCTTGCTGACTGTCAGGCACTAATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTTGATTATTCAACAGCTGCTTGCTGACTGTCAGGCACTAATGA  995

seq1  GGTCACTGGCTGGAGTACACACGCTCCCTGGTCTCATGGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGCTGGAGTACACACGCTCCCTGGTCTCATGGAATTC  1039

seq1: chr9_58915458_58916277
seq2: B6Ng01-014D11.g_68_886

seq1  GAATTCCCATCAATGTGAAAGATCCTATTTGTTTTATTGGGCACACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCAATGTGAAAGATCCTATTTGTTTTATTGGGCACACTCTA  50

seq1  GAGATATGATCCTAGAACATGCCGAGAATCCACATTTCATAACACTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGATCCTAGAACATGCCGAGAATCCACATTTCATAACACTACTC  100

seq1  TAGCTTTCCCCTCTCATTGGCCCCAGAGACTGGCTAGGTACTTACCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCCCCTCTCATTGGCCCCAGAGACTGGCTAGGTACTTACCTACT  150

seq1  ATGATCCAAGCAGTGCAAGGCTGAGTCACTGCATGGTGTCTCTGGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCAAGCAGTGCAAGGCTGAGTCACTGCATGGTGTCTCTGGACTGA  200

seq1  AGGACTATTGGTGATTTCTAAAGATCTTGGTTTTCTGGGAGGGCAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATTGGTGATTTCTAAAGATCTTGGTTTTCTGGGAGGGCAGAACA  250

seq1  AAATTTTTTTAGCTCTTGACAAGAGTTCGATGCTTTGCTGGGCTCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTAGCTCTTGACAAGAGTTCGATGCTTTGCTGGGCTCCTGCT  300

seq1  AGACCTAGAACCCTCAAAGTCCATTGCCAACAAGATTCATACATTATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGAACCCTCAAAGTCCATTGCCAACAAGATTCATACATTATTAC  350

seq1  TTTCCTCTCGTTATGGTGGAGTTGTTTGGATGAGAGAGAGGCTCCCGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCGTTATGGTGGAGTTGTTTGGATGAGAGAGAGGCTCCCGTAG  400

seq1  TGAGACTAGTAGATTTAGAAGATGAAGATAGAGATTAAAATGAGATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAGTAGATTTAGAAGATGAAGATAGAGATTAAAATGAGATAGAG  450

seq1  GAGAGAAAGAGGAGGGGGGAACCCAAATATTTGTTCTTTCTTGCCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAGGAGGGGGGAACCCAAATATTTGTTCTTTCTTGCCAAGTG  500

seq1  ATGGCTCTTTCCATGTCTTGACACAGCAAGAAACCCTTCACCAGGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTTCCATGTCTTGACACAGCAAGAAACCCTTCACCAGGTGCAA  550

seq1  ACCCTCAGTCTTGGACTTTCCAGAGAAGGCAAAAGAGAAGCTAACTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGTCTTGGACTTTCCAGAGAAGGCAAAAGAGAAGCTAACTGCCC  600

seq1  AGTGAGCAGAGCGGATGGTCCCTCGATTCCAGGGAGTCAGGATGTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAGAGCGGATGGTCCCTCGATTCCAGGGAGTCAGGATGTTGTGT  650

seq1  CTCCTCTCCCAGGTCTCTTCTCCCTCACACTGATGTCCTTCAGTCGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCCAGGTCTCTTCTCCCTCACACTGATGTCCTTCAGTCGAGCT  700

seq1  AAGCAAGAACATCCAACAAACCAAGGCAGCGGAGCATGCATGTGTGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAACATCCAACAAACCAAGGCAGCGGAGCATGCATGTGTGTAGG  750

seq1  TGGAAAGAATGACCTTTTCTATGTCCTGCCCAACCTTCAAAGATGCTCTT  800
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TGGAAAGAATGACCTTTTCTATGTCCTGCCCACCCTTCAAATATGCTCTT  800

seq1  AAATGGCATGCCCCAGCTGC  820
      |||| |||||||||||||||
seq2  AAAT-GCATGCCCCAGCTGC  819