BAC Information

Click to search

BAC

Clone NameB6Ng01-014G19
Chromosome2 (Build37)9 (Build37)
Map Location 82,788,926 - 82,790,0423,817,556 - 3,818,042
singlet/doubletsingletsinglet
Overlap geneLOC433440
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneFsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014G19.bB6Ng01-014G19.g
ACCDH848974DH848975
length1,136873
definitionDH848974|Mus musculus domesticus DNA, BAC clone: B6Ng01-014G19, 5' end.DH848975|Mus musculus domesticus DNA, BAC clone: B6Ng01-014G19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,788,926 - 82,790,042)(3,817,556 - 3,818,042)
sequence
gaattcttagattaaaccatgagtttctttcgggcttgaatcaaagctgt
gtctagaatacacctctcttctgcctctctccacccttcttccctcctct
tctcattttctccccccttcccctgtgtttgttttctgcctgtggaacat
atataaatggattcaagttttccttaagagttaagagacatcagaatgaa
gcaagtgtgtgctcacaaatttatattacaaagtaggaatgttaaagaaa
atgagaatggatcagatctgcatgcatttgaagctgtagactctgaaaaa
ctggagcagaagaacaaagagttcaaaccagtctgagctacagattgtgg
ggcatgtgtcatttaaaatacatatataggtaataaatagtaaaataaac
agagacataaaatttagtattggtgaaccagaaaagtatttgccttatat
ttgcagaaagacaaattcttattttagttcagctgtgtaaaagattcaaa
tagaattaaatgcttttaaacaatttatcatttataaaatatgggaattt
taatgatgtcatttctgggaaatgtaaaaccatacattactgactttttt
tttttttttgaaaaacatagcaattgatatcaaaacagctacataaactg
caagaaaccagcccacttcctcactgttctgatgtcacacgattccaaaa
ctggttgttacaggacaacactcattctattaaggaccaagaacgttttg
ttaaaggcacaggtgagactgaagtgtgtgtgtgtgtatgcatgtgtgta
tgtgtgtgtgtaaacctgatataaattgtaccgaaaagcattgtaagcag
gacctttttattttttaaagtagcattgttttggtttgttttccacagga
aaaagaaaagttaatttcttattattatcaattttattgggtattttatt
ttattacaggtcaaatggtattccccatcctggttctccctccacaaaac
ctgtcccatcctccctctggccttgcctcaaagagggtgctccccaaccc
cctttacccactcctccccccactgtgctagacaatccctttaccctggg
ggcatcgaggcccctcccacggtaccaaaggcttcc
gaattcaccttataagtccggaaaaaaatgggaaaagaaaaactttaaaa
gatccagtaatttttaaaaatctttttgtgtcttttcaggcttaggtcat
aattgaaaggatggatattttcttggaggatgaaattaatttacacatgt
ttagtcagtattttccatattcctttgtctatgttcatataaatccccca
tgttaaatgacaaaaccttcaagaagtcagagagtagacaacacagttag
aagtaactatcatgtaaagaaagttaaaagtgcatttagtttggcctttc
catggttgtacattgttgcaaggaaaaactgttctatgtttaattcacag
cttcccttctcaaaagtaaggaggaaattctttttttttatttttttatt
ttttttaatttattacatattttcctcaatgacatttccaatgctatccc
aaaagtcccccataccctccccccccccacttccctacccacccattctc
attttttggccctggcgttcccctgtactggggcatataaagtttgtgtg
tccgatgggcctctctttccagtgatggccgactaggccatctttttgat
atatgcagctaaagacaagagctcccaggtactggttagttcatattgtg
gttccacctatagggtgcagttccctttagctccttggggaatttctcta
gctcctccattagggccatgtgacccatccaataactgaactgtgagcat
ccacttctgtggttgctagggcccaagaatagtctcaccaagagacagct
atattttgggttctttcagcaaaatctgctagggtatgcagtggtgtcag
caatcgggaagctgattatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82788926_82790042
seq2: B6Ng01-014G19.b_44_1179

seq1  GAATTCTTAGATTAAACCATGAGTTTCTTTCGGGCTTGAATCAAAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATTAAACCATGAGTTTCTTTCGGGCTTGAATCAAAGCTGT  50

seq1  GTCTAGAATACACCTCTCTTCTGCCTCTCTCCACCCTTCTTCCCTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAATACACCTCTCTTCTGCCTCTCTCCACCCTTCTTCCCTCCTCT  100

seq1  TCTCATTTTCTCCCCCCTTCCCCTGTGTTTGTTTTCTGCCTGTGGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTCTCCCCCCTTCCCCTGTGTTTGTTTTCTGCCTGTGGAACAT  150

seq1  ATATAAATGGATTCAAGTTTTCCTTAAGAGTTAAGAGACATCAGAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGGATTCAAGTTTTCCTTAAGAGTTAAGAGACATCAGAATGAA  200

seq1  GCAAGTGTGTGCTCACAAATTTATATTACAAAGTAGGAATGTTAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTGTGCTCACAAATTTATATTACAAAGTAGGAATGTTAAAGAAA  250

seq1  ATGAGAATGGATCAGATCTGCATGCATTTGAAGCTGTAGACTCTGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGGATCAGATCTGCATGCATTTGAAGCTGTAGACTCTGAAAAA  300

seq1  CTGGAGCAGAAGAACAAAGAGTTCAAACCAGTCTGAGCTACAGATTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGAAGAACAAAGAGTTCAAACCAGTCTGAGCTACAGATTGTGG  350

seq1  GGCATGTGTCATTTAAAATACATATATAGGTAATAAATAGTAAAATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGTCATTTAAAATACATATATAGGTAATAAATAGTAAAATAAAC  400

seq1  AGAGACATAAAATTTAGTATTGGTGAACCAGAAAAGTATTTGCCTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAAAATTTAGTATTGGTGAACCAGAAAAGTATTTGCCTTATAT  450

seq1  TTGCAGAAAGACAAATTCTTATTTTAGTTCAGCTGTGTAAAAGATTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAAGACAAATTCTTATTTTAGTTCAGCTGTGTAAAAGATTCAAA  500

seq1  TAGAATTAAATGCTTTTAAACAATTTATCATTTATAAAATATGGGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAAATGCTTTTAAACAATTTATCATTTATAAAATATGGGAATTT  550

seq1  TAATGATGTCATTTCTGGGAAATGTAAAACCATACATTACTGACTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTCATTTCTGGGAAATGTAAAACCATACATTACTGACTTTTTT  600

seq1  TTTTTTTTTGAAAAACATAGCAATTGATATCAAAACAGCTACATAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGAAAAACATAGCAATTGATATCAAAACAGCTACATAAACTG  650

seq1  CAAGAAACCAGCCAACTTCCTCACTGTTCTGATGTCACACGATTCCAAAA  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACCAGCCCACTTCCTCACTGTTCTGATGTCACACGATTCCAAAA  700

seq1  CTGGTTGTTACAGGACAACACTCATTCTATTAAGGACCAAGAACG-TTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGTTGTTACAGGACAACACTCATTCTATTAAGGACCAAGAACGTTTTG  750

seq1  TT-AAGGCACAGGTGAGACTGAAGTGTGTGTGTGTGTATGCATGTGTGTA  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCACAGGTGAGACTGAAGTGTGTGTGTGTGTATGCATGTGTGTA  800

seq1  TGTGTGTGTGTATACCTGATATAAATTGTACCGAAAAGCATTGTAAGCA-  847
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TGTGTGTGTGTAAACCTGATATAAATTGTACCGAAAAGCATTGTAAGCAG  850

seq1  GACC-TTTTATTTTT--AAGTAGCATTGTTTT-GTTTGTTTTCCACAGGA  893
      |||| ||||||||||  ||||||||||||||| |||||||||||||||||
seq2  GACCTTTTTATTTTTTAAAGTAGCATTGTTTTGGTTTGTTTTCCACAGGA  900

seq1  AAA--GAATGTTTATTTCTTATTATTATC-ATTTTATTGGTTATTTTATT  940
      |||   || ||| |||||||||||||||| |||||||||| |||||||||
seq2  AAAAGAAAAGTTAATTTCTTATTATTATCAATTTTATTGGGTATTTTATT  950

seq1  TATTTACAGGTCAAATGGTATTCCCCATCCTGGTTTCTCCTCCACAAAAC  990
      |  ||||||||||||||||||||||||||||||||   ||||||||||| 
seq2  TTATTACAGGTCAAATGGTATTCCCCATCCTGGTTCTCCCTCCACAAAA-  999

seq1  CCTGTCCCATCCTCCCTCT-GCCCTGCCTCAACGAGGGTGCTCCCCA--C  1037
      ||||||||||||||||||| ||| |||||||| ||||||||||||||  |
seq2  CCTGTCCCATCCTCCCTCTGGCCTTGCCTCAAAGAGGGTGCTCCCCAACC  1049

seq1  CCACTTACCCACTCCT-CCCTCACTGTCCTAG-CATTCCC-TTACACT-G  1083
      ||  |||||||||||| ||| |||||| |||| || |||| |||| || |
seq2  CCCTTTACCCACTCCTCCCCCCACTGTGCTAGACAATCCCTTTACCCTGG  1099

seq1  GGGCATCGAG---CCT-CCACAGGACCAAAGGCCTTCC  1117
      ||||||||||   ||| |||| | |||||||| |||||
seq2  GGGCATCGAGGCCCCTCCCACGGTACCAAAGG-CTTCC  1136

seq1: chr9_3817556_3818042
seq2: B6Ng01-014G19.g_442_939

seq1  AAATTCTTTTTTTTTA-ATTTTTATTTTT-----TTTATTAGGTATTTTC  44
      ||||||||||||||||  |||||||||||     |||||||  |||||||
seq2  AAATTCTTTTTTTTTATTTTTTTATTTTTTTTAATTTATTACATATTTTC  50

seq1  CTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCC  94
      |||  | |||||| ||||||||||||||| ||||||||||||| ||||||
seq2  CTCAATGACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCC  100

seq1  C----ATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  140
      |     | ||||||||||||| || |  ||||||||||||||||||||||
seq2  CCCCACTTCCCTACCCACCCATTCTCATTTTTTGGCCCTGGCGTTCCCCT  150

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTG  190
      ||||||||||||||||||||||   |||| |||||||||||||| |||||
seq2  GTACTGGGGCATATAAAGTTTGTGTGTCCGATGGGCCTCTCTTTCCAGTG  200

seq1  ATGGCTGACTAGGCCATC-TTTTGATACATATGCAGCTAAAGACAAGAGC  239
      ||||| |||||||||||| |||||||  ||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTTGAT--ATATGCAGCTAAAGACAAGAGC  248

seq1  TCCCAGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGT  289
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TCCCAGGTACTGGTTAGTTCATATTGTGGTTCCACCTATAGGG-TGCAGT  297

seq1  TCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGTGTGCCGTG  339
      |||||||||||||||||| |||||||||||||||||||||  | ||| ||
seq2  TCCCTTTAGCTCCTTGGGGAATTTCTCTAGCTCCTCCATT-AGGGCCATG  346

seq1  TGACCCATCCAATAGCTG-ACTGTGATCATCCACTTCTGTGTTTGCTA-G  387
      |||||||||||||| ||| ||||||| |||||||||||||| |||||| |
seq2  TGACCCATCCAATAACTGAACTGTGAGCATCCACTTCTGTGGTTGCTAGG  396

seq1  GCCCGGGCATAGTCTCA-CAAGAGACAGCTATA-TCTGGGTCCTTTCAGC  435
      ||||  | ||||||||| ||||||||||||||| | ||||| ||||||||
seq2  GCCCAAGAATAGTCTCACCAAGAGACAGCTATATTTTGGGTTCTTTCAGC  446

seq1  AAAATCTTGCTAGTGTATGCAATGGTGTCAGC-ATTTGGAAGCTGATTAT  484
      |||||| |||||| ||||||| |||||||||| ||  |||||||||||||
seq2  AAAATC-TGCTAGGGTATGCAGTGGTGTCAGCAATCGGGAAGCTGATTAT  495

seq1  GGG  487
      |||
seq2  GGG  498