BAC Information

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BAC

Clone NameB6Ng01-014O11
Chromosome9 (Build37)
Map Location 100,384,909 - 100,543,028
singlet/doubletdoublet
Overlap geneIl20rb, Nck1, LOC633385, Tmem22, LOC667486
Upstream geneArmc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590
Downstream geneStag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014O11.bB6Ng01-014O11.g
ACCDH849316DH849317
length1,1151,003
definitionDH849316|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O11, 5' end.DH849317|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,541,894 - 100,543,028)(100,384,909 - 100,385,910)
sequence
gaattcttggtcttgtaggtcatcagcctcattgctgactcaattttttt
ttattggcagaggcagctgcattttcaatatctccttagaaacgttaaac
ttgtttatagtcttgagggctggctagctagctagtacctcaattgtctc
tggaatgtatcccaaaggttgcaaagtgcgttccacatcactggaggaac
tttggtatgaattcgtgacagtcctttcagcaaagtatctcgtttactag
cctctgattgacttcctattgtgttctctgcagagcctgtttttagcttg
ccttgttaaaagacggtgcgggctccaagccatagtcatatgtaatttaa
tctatcgaatgtgtgggactctgataaagagctgatattctatcaacatg
tttgtagtcgtgatctcaaaaaaatctcacctagtttaaccatcccccat
tcccttctctccccagtccagccctgcctgaatgccattgcctttttttt
ttctagaatagcttcagtattttatcttctaggtgctttctgttttgttt
tgttttttgttttgttttttttttttagtttccatttatctttaaaaaca
atcaaggctgttaactccctcaacttgctgtactatcacaatgttcctta
cccaggcacatgtctgaagagaatcactgtgggtgctctagccacagcct
tgggaggctaaggcagaaggatttggagagagacaatgagacttatccaa
ggagaatgaggggaccaggggcagtcatgtccttcaccaggccccaccca
cccttgaaaacattttaagctgcctttgaatctgtacctacattgttccc
tagtcttctgattgagttgctagctctgggtttgttttgtttgatttttg
tgtttagatcctacagtccaccctgagttctctgctcttttctgcgttgt
tgctctttaagtcccaattacttgtcgttcccagttgtctgaagagatac
cgtacttccagctactttcagtagccccatccggctcaacactcaaataa
ttcctctctagcctatatcttataacttcggtaattttagcagcttgggg
gcctgcactgtgacc
gaattcaatctacatggaaggcaaagcaggaggattgcaaatccaagccc
tgtctgggttacagagcaagctcaaggcagctttgaaaatgtagggaaac
tccaactgaaaaacagaaagttacaaaaacctaagcaaaaaacaagcagg
gacaaggctctgagaatactgttcaatagtagagcaattgcatcaagatg
cattaggtcataggtccgatcttaggagagaaagaagagaaggagagaga
gagaagaaggaaggaagttagaggcaggctgtcattgttattagtattag
caaacagtttcctaagtcacccacttttatttggaaaaggcgaagcaagt
caactttactcatctaccaagtgatctagtaagcaatagaagttcactct
gcgtttgcaatgttcgcctacagagttctgagcaaatgctcaaaattgca
tgaaggcaactttagctaaaacaagtattttctgacaccattatttgtaa
taccaaaagataagaataattagcatttggggcaggggtgttaaagtttt
taaaacttctttgtattgtcttgttttaactcctcaagactttaaggtgg
ctgttataaacacttcacaaatgggaaaatgatgttatacgaccagtggc
taaactaggaagtcacaaacatgtacagacacagacactgatacgtggtg
gggtgggtgtagcaggaggacacatgggttggcagactggcttatttgcc
atgacaagtttgtggaggtcagaggacaacttgaagaagctggccttctc
ttccaccgttttgagttctgaggattgaactcagttgtcaggcttggcaa
caaagtacagtttaccaaccgaccatttcaacagcccccgtgggaaaatt
ataacaacgaagccaaggcaagcagcagtaatagaatgcatatactgtgg
agacagcaagtgtgcctgcaatctaatattagttttctggaagggagtga
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100541894_100543028
seq2: B6Ng01-014O11.b_46_1160 (reverse)

seq1  GGTCACAGTGCAGTCCCCAAACCTGCTAAAATTACAG-AGTTATTAAGAT  49
      ||||||||||||| |||| || ||||||||||||| | ||||| ||||||
seq2  GGTCACAGTGCAGGCCCCCAAGCTGCTAAAATTACCGAAGTTA-TAAGAT  49

seq1  ATTAGGGTAAGAGAGGAATTATTTTTAAGTGTTGAGCTGGATGGAGCTAC  99
      | |||| | ||||||||||||  ||| |||||||||| |||||| |||| 
seq2  A-TAGGCT-AGAGAGGAATTA--TTTGAGTGTTGAGCCGGATGGGGCTA-  94

seq1  CTGAAAAGTAGCTGGAAGTACGGTATCTTCCTTCAGGAACAACTGGGAAC  149
      ||| ||||||||||||||||||||||||  ||||||  ||||||||||| 
seq2  CTG-AAAGTAGCTGGAAGTACGGTATCT--CTTCAG--ACAACTGGGAA-  138

seq1  CGACAAGTAATTTGGGGACTTTTAAAGAGCAACAACGCAGAAAAGGAGCA  199
      ||||||||||||  |||||  ||||||||||||||||||||||| |||||
seq2  CGACAAGTAATT--GGGAC--TTAAAGAGCAACAACGCAGAAAA-GAGCA  183

seq1  GAGAACTCAGGGTTGGACTGTAGGATCTAAAACACAAAAATCAAAACAAA  249
      |||||||||||| ||||||||||||||| ||||||||||||| |||||||
seq2  GAGAACTCAGGG-TGGACTGTAGGATCT-AAACACAAAAATC-AAACAAA  230

seq1  ACAAAACCCAGAGCTAGCAACTCAATCAGAAGACTAGGGAACAATGTAGG  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-AAACCCAGAGCTAGCAACTCAATCAGAAGACTAGGGAACAATGTAGG  279

seq1  TACAGATTCAAAGGCAGCTTAAAATGTTTTCAAGGGTGGGTGGGGCCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTCAAAGGCAGCTTAAAATGTTTTCAAGGGTGGGTGGGGCCTGG  329

seq1  TGAAGGACATGACTGCCCCTGGTCCCCTCATTCTCCTTGGATAAGTCTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACATGACTGCCCCTGGTCCCCTCATTCTCCTTGGATAAGTCTCA  379

seq1  TTGTCTCTCTCCAAATCCTTCTGCCTTAGCCTCCCAAGGCTGTGGCTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCTCCAAATCCTTCTGCCTTAGCCTCCCAAGGCTGTGGCTAGA  429

seq1  GCACCCACAGTGATTCTCTTCAGACATGTGCCTGGGTAAGGAACATTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCACAGTGATTCTCTTCAGACATGTGCCTGGGTAAGGAACATTGTG  479

seq1  ATAGTACAGCAAGTTGAGGGAGTTAACAGCCTTGATTGTTTTTAAAGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACAGCAAGTTGAGGGAGTTAACAGCCTTGATTGTTTTTAAAGATA  529

seq1  AATGGAAACTAAAAAAAAAAAACAAAACAAAAAACAAAACAAAACAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACTAAAAAAAAAAAACAAAACAAAAAACAAAACAAAACAGAAA  579

seq1  GCACCTAGAAGATAAAATACTGAAGCTATTCTAGAAAAAAAAAAGGCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAGAAGATAAAATACTGAAGCTATTCTAGAAAAAAAAAAGGCAAT  629

seq1  GGCATTCAGGCAGGGCTGGACTGGGGAGAGAAGGGAATGGGGGATGGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAGGCAGGGCTGGACTGGGGAGAGAAGGGAATGGGGGATGGTTA  679

seq1  AACTAGGTGAGATTTTTTTGAGATCACGACTACAAACATGTTGATAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGAGATTTTTTTGAGATCACGACTACAAACATGTTGATAGAAT  729

seq1  ATCAGCTCTTTATCAGAGTCCCACACATTCGATAGATTAAATTACATATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTTTATCAGAGTCCCACACATTCGATAGATTAAATTACATATG  779

seq1  ACTATGGCTTGGAGCCCGCACCGTCTTTTAACAAGGCAAGCTAAAAACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGCTTGGAGCCCGCACCGTCTTTTAACAAGGCAAGCTAAAAACAG  829

seq1  GCTCTGCAGAGAACACAATAGGAAGTCAATCAGAGGCTAGTAAACGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAGAGAACACAATAGGAAGTCAATCAGAGGCTAGTAAACGAGAT  879

seq1  ACTTTGCTGAAAGGACTGTCACGAATTCATACCAAAGTTCCTCCAGTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGAAAGGACTGTCACGAATTCATACCAAAGTTCCTCCAGTGAT  929

seq1  GTGGAACGCACTTTGCAACCTTTGGGATACATTCCAGAGACAATTGAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACGCACTTTGCAACCTTTGGGATACATTCCAGAGACAATTGAGGT  979

seq1  ACTAGCTAGCTAGCCAGCCCTCAAGACTATAAACAAGTTTAACGTTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTAGCTAGCCAGCCCTCAAGACTATAAACAAGTTTAACGTTTCTA  1029

seq1  AGGAGATATTGAAAATGCAGCTGCCTCTGCCAATAAAAAAAAATTGAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATTGAAAATGCAGCTGCCTCTGCCAATAAAAAAAAATTGAGTC  1079

seq1  AGCAATGAGGCTGATGACCTACAAGACCAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAGGCTGATGACCTACAAGACCAAGAATTC  1115

seq1: chr9_100384909_100385910
seq2: B6Ng01-014O11.g_69_1071

seq1  GAATTCAATCTACATGGAAGGCAAAGCAGGAGGATTGCAAATCCAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTACATGGAAGGCAAAGCAGGAGGATTGCAAATCCAAGCCC  50

seq1  TGTCTGGGTTACAGAGCAAGCTCAAGGCAGCTTTGAAAATGTAGGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTTACAGAGCAAGCTCAAGGCAGCTTTGAAAATGTAGGGAAAC  100

seq1  TCCAACTGAAAAACAGAAAGTTACAAAAACCTAAGCAAAAAACAAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGAAAAACAGAAAGTTACAAAAACCTAAGCAAAAAACAAGCAGG  150

seq1  GACAAGGCTCTGAGAATACTGTTCAATAGTAGAGCAATTGCATCAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCTCTGAGAATACTGTTCAATAGTAGAGCAATTGCATCAAGATG  200

seq1  CATTAGGTCATAGGTCCGATCTTAGGAGAGAAAGAAGAGAAGGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTCATAGGTCCGATCTTAGGAGAGAAAGAAGAGAAGGAGAGAGA  250

seq1  GAGAAGAAGGAAGGAAGTTAGAGGCAGGCTGTCATTGTTATTAGTATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGGAAGGAAGTTAGAGGCAGGCTGTCATTGTTATTAGTATTAG  300

seq1  CAAACAGTTTCCTAAGTCACCCACTTTTATTTGGAAAAGGCGAAGCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTTTCCTAAGTCACCCACTTTTATTTGGAAAAGGCGAAGCAAGT  350

seq1  CAACTTTACTCATCTACCAAGTGATCTAGTAAGCAATAGAAGTTCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTACTCATCTACCAAGTGATCTAGTAAGCAATAGAAGTTCACTCT  400

seq1  GCGTTTGCAATGTTCGCCTACAGAGTTCTGAGCAAATGCTCAAAATTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGCAATGTTCGCCTACAGAGTTCTGAGCAAATGCTCAAAATTGCA  450

seq1  TGAAGGCAACTTTAGCTAAAACAAGTATTTTCTGACACCATTATTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAACTTTAGCTAAAACAAGTATTTTCTGACACCATTATTTGTAA  500

seq1  TACCAAAAGATAAGAATAATTAGCATTTGGGGCAGGGGTGTTAAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGATAAGAATAATTAGCATTTGGGGCAGGGGTGTTAAAGTTTT  550

seq1  TAAAACTTCTTTGTATTGTCTTGTTTTAACTCCTCAAGACTTTAAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCTTTGTATTGTCTTGTTTTAACTCCTCAAGACTTTAAGGTGG  600

seq1  CTGTTATAAACACTTCACAAATGGGAAAATGATGTTATACGACCAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAAACACTTCACAAATGGGAAAATGATGTTATACGACCAGTGGC  650

seq1  TAAACTAGGAAGTCACAAACATGTACAGACACAGACACTGATACGTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGGAAGTCACAAACATGTACAGACACAGACACTGATACGTGGTG  700

seq1  GGGTGGGTGTAGCAGGAGGACACATGGGTTGGCAGACTGGCTTATTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTGTAGCAGGAGGACACATGGGTTGGCAGACTGGCTTATTTGCC  750

seq1  ATGACAAGTTTGTGGAGGTCAGAGGACAACTTGAGGAAGCTGGCCCTCTC  800
      |||||||||||||||||||||||||||||||||| |||||||||| ||| 
seq2  ATGACAAGTTTGTGGAGGTCAGAGGACAACTTGAAGAAGCTGGCCTTCT-  799

seq1  CTTCCACCG-TTTGAGTTCTGAGGATTGAACTCAGTTGTCAGGCTTGGCA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCGTTTTGAGTTCTGAGGATTGAACTCAGTTGTCAGGCTTGGCA  849

seq1  ACAAAGTACAG-TTACCAACCGAACCATTTCAACAGCCCCCGTGGGAAAA  898
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  ACAAAGTACAGTTTACCAACCG-ACCATTTCAACAGCCCCCGTGGGAAAA  898

seq1  TTATAACAACGAAGGCCAAGGCAAGCAAGCAGTAATAGAATGCATATACT  948
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TTATAACAACGAA-GCCAAGGCAAGC-AGCAGTAATAGAATGCATATACT  946

seq1  GTGGAGACAGCAAGTG-GCCTGCAATCT-ATATTAGTTTTCT-GAAAGGA  995
      |||||||||||||||| ||||||||||| ||||||||||||| ||| |||
seq2  GTGGAGACAGCAAGTGTGCCTGCAATCTAATATTAGTTTTCTGGAAGGGA  996

seq1  GTGAGAC  1002
      |||||||
seq2  GTGAGAC  1003